Wall clock time and date at job start Wed Apr 1 2020 02:59:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34762 * 116.99460 * 2 1 4 4 O 1.21528 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.47324 * 120.00093 * 180.02562 * 3 2 1 6 6 C 1.39886 * 120.08681 * 5.43432 * 5 3 2 7 7 C 1.37682 * 120.05392 * 179.97438 * 6 5 3 8 8 C 1.38933 * 120.23140 * 359.76222 * 7 6 5 9 9 O 1.35795 * 119.91213 * 180.25327 * 8 7 6 10 10 C 1.42909 * 116.99612 * 0.26253 * 9 8 7 11 11 C 1.39395 * 120.18289 * 0.51442 * 8 7 6 12 12 N 1.40150 * 120.02448 * 179.73705 * 11 8 7 13 13 C 1.38208 * 119.99473 * 198.85162 * 12 11 8 14 14 C 1.39036 * 120.00091 * 60.35680 * 13 12 11 15 15 H 1.08007 * 119.99841 * 204.22557 * 14 13 12 16 16 C 1.40810 * 119.99879 * 24.21983 * 14 13 12 17 17 N 1.30345 * 120.00357 * 8.32623 * 16 14 13 18 18 Si 1.86803 * 119.99636 * 188.31968 * 16 14 13 19 19 H 1.48496 * 109.47290 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46570 * 120.00552 * 18 16 14 21 21 H 1.48502 * 109.47045 * 240.00222 * 18 16 14 22 22 C 1.41190 * 119.99880 * 240.34657 * 13 12 11 23 23 C 1.43197 * 119.99923 * 185.55598 * 22 13 12 24 24 N 8.69076 * 108.87893 * 6.50464 * 2 1 3 25 25 C 1.43200 * 120.00086 * 5.55913 * 22 13 12 26 26 N 8.05424 * 125.41712 * 337.44735 * 2 1 3 27 27 C 1.38623 * 119.94410 * 359.46791 * 11 8 7 28 28 F 1.35105 * 120.11437 * 180.25620 * 27 11 8 29 29 H 1.08997 * 109.47422 * 299.99255 * 1 2 3 30 30 H 1.08992 * 109.47208 * 60.00099 * 1 2 3 31 31 H 1.09005 * 109.46389 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.97738 * 359.97438 * 6 5 3 33 33 H 1.07994 * 119.88790 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46970 * 59.99722 * 10 9 8 35 35 H 1.09003 * 109.46931 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46357 * 299.99731 * 10 9 8 37 37 H 0.97002 * 120.00261 * 19.13631 * 12 11 8 38 38 H 0.97001 * 120.00057 * 184.98253 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4018 2.2200 0.0005 5 6 3.5350 1.2781 -0.0006 6 6 4.2984 0.1116 -0.1157 7 6 5.6733 0.1846 -0.1167 8 6 6.3085 1.4155 -0.0085 9 8 7.6649 1.4805 -0.0154 10 6 8.3729 0.2456 -0.1425 11 6 5.5574 2.5835 0.1125 12 7 6.2016 3.8229 0.2270 13 6 5.5170 4.9137 0.7286 14 6 4.9961 4.8752 2.0171 15 1 4.1618 5.5082 2.2814 16 6 5.5563 4.0110 2.9774 17 7 6.6590 3.3687 2.7119 18 14 4.7190 3.7852 4.6319 19 1 3.4915 4.6193 4.6835 20 1 4.3543 2.3568 4.8111 21 1 5.6454 4.1993 5.7161 22 6 5.3468 6.0673 -0.0675 23 6 4.7433 7.2398 0.4906 24 7 4.2641 8.1703 0.9316 25 6 5.7777 6.0648 -1.4332 26 7 6.1197 6.0619 -2.5174 27 6 4.1727 2.5187 0.1140 28 9 3.4412 3.6491 0.2259 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 3.8090 -0.8471 -0.2040 33 1 6.2601 -0.7176 -0.2062 34 1 8.0979 -0.2358 -1.0810 35 1 9.4455 0.4393 -0.1336 36 1 8.1151 -0.4083 0.6905 37 1 7.1267 3.9160 -0.0495 38 1 7.0060 2.7193 3.3434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169079920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:07 Heat of formation + Delta-G solvation = -65.072839 kcal Electronic energy + Delta-G solvation = -30554.849767 eV Core-core repulsion = 26085.366202 eV Total energy + Delta-G solvation = -4469.483566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.096 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.14334 -40.33832 -39.76669 -37.63738 -36.70742 -36.08497 -35.15068 -34.61947 -33.59803 -31.29310 -30.16292 -28.40655 -27.88589 -27.04076 -26.89005 -23.55147 -22.66360 -21.14988 -20.82810 -18.99514 -18.20285 -17.69233 -17.35222 -16.99939 -16.47504 -16.29279 -16.10750 -15.65070 -15.64230 -15.08224 -14.98161 -14.67808 -14.30402 -13.82256 -13.69813 -13.13907 -12.80245 -12.77330 -12.54976 -12.50345 -12.29877 -12.23388 -11.96988 -11.93808 -11.69870 -11.55872 -11.54051 -11.42100 -11.10042 -10.95492 -10.84206 -10.80341 -10.69434 -10.64775 -10.25728 -10.04145 -9.87395 -8.29540 -8.06625 -7.64720 -6.63911 -5.35602 0.90099 1.50299 2.24323 2.74861 2.75788 2.77463 2.83964 2.93201 3.25881 3.47388 3.82720 3.92955 4.00748 4.14453 4.31859 4.43379 4.73670 4.82487 4.95882 5.02987 5.11726 5.17723 5.19849 5.23841 5.26783 5.39232 5.48314 5.50399 5.67558 5.91784 6.00745 6.21295 6.29732 6.34006 6.45731 6.47011 6.81149 7.13781 7.24562 7.49034 7.75234 7.85637 7.95606 8.29696 8.51127 9.04203 9.22404 9.28947 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.007933 B = 0.005621 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.735882 B = 4979.795614 C = 5461.618743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.510 3.490 4 O -0.491 6.491 5 C -0.172 4.172 6 C -0.057 4.057 7 C -0.203 4.203 8 C 0.130 3.870 9 O -0.298 6.298 10 C 0.030 3.970 11 C 0.178 3.822 12 N -0.651 5.651 13 C 0.389 3.611 14 C -0.380 4.380 15 H 0.110 0.890 16 C 0.071 3.929 17 N -0.718 5.718 18 Si 0.915 3.085 19 H -0.247 1.247 20 H -0.262 1.262 21 H -0.263 1.263 22 C -0.305 4.305 23 C 0.328 3.672 24 N -0.533 5.533 25 C 0.311 3.689 26 N -0.536 5.536 27 C 0.138 3.862 28 F -0.089 7.089 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.140 0.860 33 H 0.136 0.864 34 H 0.053 0.947 35 H 0.098 0.902 36 H 0.055 0.945 37 H 0.411 0.589 38 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.001 -18.163 1.856 18.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.355 3.645 4 O -0.379 6.379 5 C -0.175 4.175 6 C -0.077 4.077 7 C -0.223 4.223 8 C 0.080 3.920 9 O -0.210 6.210 10 C -0.065 4.065 11 C 0.073 3.927 12 N -0.274 5.274 13 C 0.285 3.715 14 C -0.408 4.408 15 H 0.128 0.872 16 C -0.159 4.159 17 N -0.337 5.337 18 Si 0.736 3.264 19 H -0.170 1.170 20 H -0.186 1.186 21 H -0.187 1.187 22 C -0.323 4.323 23 C 0.020 3.980 24 N -0.216 5.216 25 C 0.004 3.996 26 N -0.218 5.218 27 C 0.113 3.887 28 F -0.067 7.067 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.073 0.927 37 H 0.249 0.751 38 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.183 -16.227 1.030 16.261 hybrid contribution -0.109 -0.682 0.982 1.201 sum -0.291 -16.909 2.012 17.031 Atomic orbital electron populations 1.23220 0.76443 1.03288 1.02679 1.86524 1.23149 1.32899 1.85027 1.20860 0.88742 0.81477 0.73431 1.90926 1.66513 1.35576 1.44865 1.18685 0.89512 0.93339 1.15976 1.20698 0.92612 0.96889 0.97508 1.20891 0.95198 0.96166 1.10035 1.18434 0.82911 0.91663 0.99018 1.86069 1.14765 1.32561 1.87568 1.23039 0.96922 0.85658 1.00874 1.16608 0.88621 0.85433 1.02006 1.41176 1.14577 1.04518 1.67101 1.16748 0.83089 0.82559 0.89130 1.20316 1.11967 1.15851 0.92636 0.87199 1.26430 0.93724 0.93339 1.02416 1.69526 1.13323 1.13917 1.36892 0.86046 0.81154 0.80181 0.79019 1.16952 1.18633 1.18703 1.13011 1.37432 0.93688 0.88205 1.24644 0.90424 0.91127 0.91849 1.81025 1.17946 1.12503 1.10094 1.25235 0.90662 0.92032 0.91648 1.81081 1.18331 1.09799 1.12621 1.16791 0.86933 0.82211 1.02735 1.91691 1.75844 1.47076 1.92078 0.91901 0.91932 0.88297 0.84230 0.84599 0.92825 0.88394 0.92682 0.75077 0.88945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.57 101.05 1.07 1.45 16 2 O -0.36 -4.87 9.82 -40.66 -0.40 -5.26 16 3 C 0.51 8.70 7.87 34.43 0.27 8.97 16 4 O -0.49 -9.90 15.14 -19.29 -0.29 -10.19 16 5 C -0.17 -2.91 5.88 -104.94 -0.62 -3.52 16 6 C -0.06 -0.75 9.60 -39.17 -0.38 -1.13 16 7 C -0.20 -2.56 9.01 -39.53 -0.36 -2.91 16 8 C 0.13 2.00 6.71 -38.89 -0.26 1.74 16 9 O -0.30 -4.20 9.82 -19.10 -0.19 -4.39 16 10 C 0.03 0.27 9.81 101.05 0.99 1.27 16 11 C 0.18 3.29 5.26 -83.48 -0.44 2.85 16 12 N -0.65 -12.94 3.21 -8.04 -0.03 -12.97 16 13 C 0.39 8.53 3.93 -83.57 -0.33 8.20 16 14 C -0.38 -8.30 6.76 -38.31 -0.26 -8.56 16 15 H 0.11 2.52 7.21 -52.48 -0.38 2.14 16 16 C 0.07 1.41 5.14 -17.21 -0.09 1.32 16 17 N -0.72 -13.69 11.25 55.59 0.63 -13.06 16 18 Si 0.91 15.75 29.58 -169.99 -5.03 10.72 16 19 H -0.25 -4.47 7.11 56.52 0.40 -4.07 16 20 H -0.26 -4.40 7.11 56.52 0.40 -4.00 16 21 H -0.26 -4.41 7.11 56.52 0.40 -4.01 16 22 C -0.30 -7.10 5.88 -104.93 -0.62 -7.71 16 23 C 0.33 7.99 14.01 -22.48 -0.31 7.68 16 24 N -0.53 -13.43 18.54 41.83 0.78 -12.66 16 25 C 0.31 7.39 14.83 -22.44 -0.33 7.06 16 26 N -0.54 -13.07 18.54 41.87 0.78 -12.29 16 27 C 0.14 2.71 6.90 -38.79 -0.27 2.44 16 28 F -0.09 -2.01 12.13 2.25 0.03 -1.98 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.45 7.61 -52.49 -0.40 1.05 16 33 H 0.14 1.23 6.27 -52.49 -0.33 0.90 16 34 H 0.05 0.41 7.66 -51.93 -0.40 0.01 16 35 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.05 0.43 7.64 -51.93 -0.40 0.04 16 37 H 0.41 7.97 8.35 -40.82 -0.34 7.63 16 38 H 0.30 5.14 8.29 -40.82 -0.34 4.81 16 LS Contribution 357.07 15.07 5.38 5.38 Total: -1.00 -28.73 357.07 -3.34 -32.07 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -3.07 Total: 5.49 kcal Atomic # 6 Polarization: 21.07 SS G_CDS: -1.93 Total: 19.14 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: 2.15 Total: -50.98 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.88 Total: -19.84 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.03 Total: -1.98 kcal Atomic # 14 Polarization: 15.75 SS G_CDS: -5.03 Total: 10.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -28.73 -3.34 -32.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.006 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds