Wall clock time and date at job start Wed Apr 1 2020 02:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34762 * 116.99460 * 2 1 4 4 O 1.21528 * 120.00107 * 0.02562 * 3 2 1 5 5 C 1.47324 * 120.00093 * 180.02562 * 3 2 1 6 6 C 1.39886 * 120.08681 * 5.43432 * 5 3 2 7 7 C 1.37682 * 120.05392 * 179.97438 * 6 5 3 8 8 C 1.38933 * 120.23140 * 359.76222 * 7 6 5 9 9 O 1.35795 * 119.91213 * 180.25327 * 8 7 6 10 10 C 1.42909 * 116.99612 * 0.26253 * 9 8 7 11 11 C 1.39395 * 120.18289 * 0.51442 * 8 7 6 12 12 N 1.40150 * 120.02448 * 179.73705 * 11 8 7 13 13 C 1.38208 * 119.99473 * 198.85162 * 12 11 8 14 14 C 1.39036 * 120.00091 * 60.35680 * 13 12 11 15 15 H 1.08007 * 119.99841 * 204.22557 * 14 13 12 16 16 C 1.40810 * 119.99879 * 24.21983 * 14 13 12 17 17 N 1.30345 * 120.00357 * 8.32623 * 16 14 13 18 18 Si 1.86803 * 119.99636 * 188.31968 * 16 14 13 19 19 H 1.48496 * 109.47290 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46570 * 120.00552 * 18 16 14 21 21 H 1.48502 * 109.47045 * 240.00222 * 18 16 14 22 22 C 1.41190 * 119.99880 * 240.34657 * 13 12 11 23 23 C 1.43197 * 119.99923 * 185.55598 * 22 13 12 24 24 N 8.69076 * 108.87893 * 6.50464 * 2 1 3 25 25 C 1.43200 * 120.00086 * 5.55913 * 22 13 12 26 26 N 8.05424 * 125.41712 * 337.44735 * 2 1 3 27 27 C 1.38623 * 119.94410 * 359.46791 * 11 8 7 28 28 F 1.35105 * 120.11437 * 180.25620 * 27 11 8 29 29 H 1.08997 * 109.47422 * 299.99255 * 1 2 3 30 30 H 1.08992 * 109.47208 * 60.00099 * 1 2 3 31 31 H 1.09005 * 109.46389 * 179.97438 * 1 2 3 32 32 H 1.08001 * 119.97738 * 359.97438 * 6 5 3 33 33 H 1.07994 * 119.88790 * 180.02562 * 7 6 5 34 34 H 1.08996 * 109.46970 * 59.99722 * 10 9 8 35 35 H 1.09003 * 109.46931 * 180.02562 * 10 9 8 36 36 H 1.09001 * 109.46357 * 299.99731 * 10 9 8 37 37 H 0.97002 * 120.00261 * 19.13631 * 12 11 8 38 38 H 0.97001 * 120.00057 * 184.98253 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4018 2.2200 0.0005 5 6 3.5350 1.2781 -0.0006 6 6 4.2984 0.1116 -0.1157 7 6 5.6733 0.1846 -0.1167 8 6 6.3085 1.4155 -0.0085 9 8 7.6649 1.4805 -0.0154 10 6 8.3729 0.2456 -0.1425 11 6 5.5574 2.5835 0.1125 12 7 6.2016 3.8229 0.2270 13 6 5.5170 4.9137 0.7286 14 6 4.9961 4.8752 2.0171 15 1 4.1618 5.5082 2.2814 16 6 5.5563 4.0110 2.9774 17 7 6.6590 3.3687 2.7119 18 14 4.7190 3.7852 4.6319 19 1 3.4915 4.6193 4.6835 20 1 4.3543 2.3568 4.8111 21 1 5.6454 4.1993 5.7161 22 6 5.3468 6.0673 -0.0675 23 6 4.7433 7.2398 0.4906 24 7 4.2641 8.1703 0.9316 25 6 5.7777 6.0648 -1.4332 26 7 6.1197 6.0619 -2.5174 27 6 4.1727 2.5187 0.1140 28 9 3.4412 3.6491 0.2259 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3632 -1.0278 -0.0005 32 1 3.8090 -0.8471 -0.2040 33 1 6.2601 -0.7176 -0.2062 34 1 8.0979 -0.2358 -1.0810 35 1 9.4455 0.4393 -0.1336 36 1 8.1151 -0.4083 0.6905 37 1 7.1267 3.9160 -0.0495 38 1 7.0060 2.7193 3.3434 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169079920.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:06 Heat of formation + Delta-G solvation = -81.508696 kcal Electronic energy + Delta-G solvation = -30555.562479 eV Core-core repulsion = 26085.366202 eV Total energy + Delta-G solvation = -4470.196278 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.096 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.63454 -41.53587 -40.94172 -39.07380 -37.94925 -37.34947 -36.91263 -36.53134 -35.11291 -32.80983 -31.33799 -29.76218 -28.84618 -28.67735 -27.79203 -24.69483 -24.04773 -22.63871 -22.02601 -20.66620 -19.41117 -19.02541 -18.80164 -18.39462 -17.88622 -17.53622 -17.39823 -16.89660 -16.73602 -16.41582 -16.30740 -16.04636 -15.43208 -15.22930 -14.84839 -14.59087 -14.40684 -14.28154 -13.91009 -13.80632 -13.68437 -13.53413 -13.40243 -13.32483 -13.18023 -13.14692 -13.01807 -12.89084 -12.70299 -12.66680 -12.11635 -12.02957 -11.82084 -11.76207 -11.57164 -11.49985 -11.31264 -9.71706 -9.46676 -9.14048 -8.08524 -7.11539 -0.33627 0.23839 0.74957 1.32246 1.44220 1.45450 1.54992 1.67917 2.02608 2.07644 2.20389 2.21415 2.35325 2.56532 2.72131 2.80145 3.40905 3.46940 3.75296 3.82583 3.91232 4.04327 4.22821 4.37650 4.37963 4.49748 4.58015 4.59675 4.67628 4.73389 4.79613 4.87657 4.91910 5.15639 5.20970 5.31427 5.42710 5.57455 5.73292 6.06031 6.19589 6.40217 6.73386 6.80349 6.94542 7.18508 7.32659 7.77159 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.007933 B = 0.005621 C = 0.005125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3528.735882 B = 4979.795614 C = 5461.618743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.348 6.348 3 C 0.511 3.489 4 O -0.536 6.536 5 C -0.193 4.193 6 C -0.030 4.030 7 C -0.190 4.190 8 C 0.141 3.859 9 O -0.317 6.317 10 C 0.017 3.983 11 C 0.147 3.853 12 N -0.654 5.654 13 C 0.391 3.609 14 C -0.383 4.383 15 H 0.089 0.911 16 C 0.048 3.952 17 N -0.709 5.709 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.247 1.247 21 H -0.249 1.249 22 C -0.328 4.328 23 C 0.330 3.670 24 N -0.560 5.560 25 C 0.318 3.682 26 N -0.556 5.556 27 C 0.102 3.898 28 F -0.120 7.120 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.143 0.857 32 H 0.178 0.822 33 H 0.184 0.816 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.074 0.926 37 H 0.410 0.590 38 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.133 -22.767 2.746 22.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.264 6.264 3 C 0.358 3.642 4 O -0.427 6.427 5 C -0.196 4.196 6 C -0.049 4.049 7 C -0.209 4.209 8 C 0.091 3.909 9 O -0.229 6.229 10 C -0.077 4.077 11 C 0.045 3.955 12 N -0.278 5.278 13 C 0.285 3.715 14 C -0.411 4.411 15 H 0.107 0.893 16 C -0.183 4.183 17 N -0.327 5.327 18 Si 0.781 3.219 19 H -0.193 1.193 20 H -0.171 1.171 21 H -0.173 1.173 22 C -0.347 4.347 23 C 0.023 3.977 24 N -0.243 5.243 25 C 0.012 3.988 26 N -0.239 5.239 27 C 0.077 3.923 28 F -0.098 7.098 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.161 0.839 32 H 0.195 0.805 33 H 0.201 0.799 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.247 0.753 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.983 -20.909 1.900 21.018 hybrid contribution -0.395 0.456 0.748 0.961 sum 0.588 -20.453 2.648 20.632 Atomic orbital electron populations 1.23590 0.74470 1.06013 1.02317 1.86502 1.24984 1.30745 1.84217 1.21038 0.89007 0.81785 0.72406 1.90905 1.67445 1.37227 1.47142 1.18887 0.89818 0.93622 1.17248 1.21178 0.92832 0.96913 0.94022 1.21389 0.95159 0.96607 1.07711 1.18621 0.83725 0.91461 0.97115 1.86070 1.14077 1.35743 1.87031 1.23447 0.97304 0.84239 1.02686 1.16873 0.88634 0.85847 1.04129 1.40987 1.14306 1.04715 1.67804 1.16670 0.83150 0.82788 0.88881 1.20347 1.11442 1.15951 0.93335 0.89296 1.26828 0.94330 0.93085 1.04045 1.69478 1.12691 1.12873 1.37645 0.85378 0.79687 0.80418 0.76396 1.19261 1.17084 1.17260 1.13180 1.38980 0.94193 0.88382 1.24913 0.90117 0.91153 0.91493 1.80985 1.19330 1.13197 1.10803 1.25296 0.90285 0.91561 0.91624 1.81048 1.19535 1.10412 1.12927 1.17269 0.87545 0.82378 1.05081 1.91601 1.76634 1.48843 1.92755 0.92434 0.92310 0.83903 0.80459 0.79884 0.90809 0.86888 0.90770 0.75258 0.87451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.57 113.37 1.20 1.74 16 2 O -0.35 -8.69 9.82 -56.73 -0.56 -9.24 16 3 C 0.51 17.24 7.87 70.21 0.55 17.80 16 4 O -0.54 -22.42 15.14 19.75 0.30 -22.13 16 5 C -0.19 -6.31 5.88 -20.07 -0.12 -6.42 16 6 C -0.03 -0.67 9.60 22.54 0.22 -0.45 16 7 C -0.19 -3.87 9.01 22.30 0.20 -3.67 16 8 C 0.14 3.97 6.71 22.72 0.15 4.13 16 9 O -0.32 -8.01 9.82 -91.25 -0.90 -8.91 16 10 C 0.02 0.23 9.81 113.37 1.11 1.34 16 11 C 0.15 5.42 5.26 38.18 0.20 5.62 16 12 N -0.65 -26.51 3.21 -179.35 -0.58 -27.09 16 13 C 0.39 17.81 3.93 39.05 0.15 17.97 16 14 C -0.38 -17.36 6.76 23.09 0.16 -17.20 16 15 H 0.09 4.34 7.21 -2.91 -0.02 4.32 16 16 C 0.05 1.89 5.14 85.54 0.44 2.33 16 17 N -0.71 -26.10 11.25 21.97 0.25 -25.85 16 18 Si 0.96 31.54 29.58 68.60 2.03 33.57 16 19 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 20 H -0.25 -7.51 7.11 99.48 0.71 -6.80 16 21 H -0.25 -7.60 7.11 99.48 0.71 -6.90 16 22 C -0.33 -16.07 5.88 -20.06 -0.12 -16.19 16 23 C 0.33 16.95 14.01 88.33 1.24 18.18 16 24 N -0.56 -29.49 18.54 19.00 0.35 -29.14 16 25 C 0.32 15.75 14.83 88.32 1.31 17.06 16 26 N -0.56 -27.95 18.54 19.02 0.35 -27.60 16 27 C 0.10 4.05 6.90 22.78 0.16 4.21 16 28 F -0.12 -5.74 12.13 44.97 0.55 -5.19 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.14 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.18 2.65 7.61 -2.91 -0.02 2.63 16 33 H 0.18 2.02 6.27 -2.91 -0.02 2.00 16 34 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 35 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.75 7.64 -2.39 -0.02 0.73 16 37 H 0.41 16.19 8.35 -92.71 -0.77 15.42 16 38 H 0.31 9.99 8.29 -92.71 -0.77 9.22 16 Total: -1.00 -67.11 357.07 9.05 -58.06 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.40 Total: 17.08 kcal Atomic # 6 Polarization: 39.59 SS G_CDS: 6.85 Total: 46.44 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: 0.38 Total: -109.68 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.15 Total: -40.28 kcal Atomic # 9 Polarization: -5.74 SS G_CDS: 0.55 Total: -5.19 kcal Atomic # 14 Polarization: 31.54 SS G_CDS: 2.03 Total: 33.57 kcal Total: -67.11 9.05 -58.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169079920.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.450 kcal (2) G-P(sol) polarization free energy of solvation -67.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds