Wall clock time and date at job start Wed Apr 1 2020 02:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34761 * 117.00297 * 2 1 4 4 O 1.21526 * 119.99782 * 359.97438 * 3 2 1 5 5 C 1.47264 * 119.99952 * 180.27726 * 3 2 1 6 6 C 1.39934 * 120.17976 * 269.72276 * 5 3 2 7 7 F 1.35097 * 120.12186 * 359.97438 * 6 5 3 8 8 C 1.38738 * 119.76372 * 180.02562 * 6 5 3 9 9 N 1.40115 * 119.93364 * 180.02562 * 8 6 5 10 10 C 1.38220 * 120.00016 * 173.87765 * 9 8 6 11 11 C 1.39033 * 119.99918 * 299.80116 * 10 9 8 12 12 H 1.07996 * 120.00533 * 158.69437 * 11 10 9 13 13 C 1.40823 * 119.99586 * 338.69501 * 11 10 9 14 14 N 1.30337 * 120.00324 * 350.87080 * 13 11 10 15 15 Si 1.86798 * 119.99661 * 170.87615 * 13 11 10 16 16 H 1.48500 * 109.47594 * 89.99855 * 15 13 11 17 17 H 1.48498 * 109.47032 * 209.99702 * 15 13 11 18 18 H 1.48498 * 109.47098 * 329.99725 * 15 13 11 19 19 C 1.41180 * 120.00193 * 119.80329 * 10 9 8 20 20 C 1.43207 * 119.99767 * 185.26274 * 19 10 9 21 21 N 9.45434 * 152.32056 * 321.69903 * 3 1 2 22 22 C 1.43193 * 120.00223 * 5.25615 * 19 10 9 23 23 N 8.37100 * 134.15969 * 43.13441 * 2 1 3 24 24 C 1.38966 * 120.13349 * 359.97438 * 8 6 5 25 25 C 1.38118 * 120.36975 * 0.02562 * 24 8 6 26 26 C 1.38575 * 120.23829 * 359.72030 * 25 24 8 27 27 O 1.35723 * 120.07158 * 180.29951 * 26 25 24 28 28 C 1.42900 * 117.00290 * 0.23155 * 27 26 25 29 29 H 1.08997 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46838 * 300.00232 * 1 2 3 31 31 H 1.08994 * 109.46705 * 59.99967 * 1 2 3 32 32 H 0.96996 * 120.00212 * 353.86734 * 9 8 6 33 33 H 0.97003 * 120.00315 * 185.05302 * 14 13 11 34 34 H 1.07993 * 119.81465 * 180.02562 * 24 8 6 35 35 H 1.08003 * 119.87884 * 179.97438 * 25 24 8 36 36 H 1.08996 * 109.47274 * 180.02562 * 28 27 26 37 37 H 1.09003 * 109.47049 * 300.00681 * 28 27 26 38 38 H 1.09003 * 109.46776 * 59.99853 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4021 2.2199 -0.0005 5 6 3.5345 1.2777 -0.0062 6 6 4.2420 1.3177 1.2005 7 9 3.5783 1.2863 2.3768 8 6 5.6273 1.3907 1.1846 9 7 6.3392 1.4304 2.3908 10 6 7.7203 1.3753 2.3803 11 6 8.3679 0.2720 1.8360 12 1 9.3942 0.3546 1.5100 13 6 7.6856 -0.9534 1.7099 14 7 6.5145 -1.1070 2.2609 15 14 8.4591 -2.3589 0.7529 16 1 9.2759 -3.1926 1.6711 17 1 7.3900 -3.1923 0.1467 18 1 9.3264 -1.8090 -0.3198 19 6 8.4734 2.4395 2.9222 20 6 9.9011 2.4358 2.8107 21 7 11.0339 2.4317 2.7220 22 6 7.8096 3.5225 3.5831 23 7 7.2838 4.3824 4.1059 24 6 6.3104 1.4235 -0.0251 25 6 5.6177 1.3844 -1.2194 26 6 4.2342 1.3061 -1.2215 27 8 3.5572 1.2616 -2.3970 28 6 4.3351 1.2943 -3.5953 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 5.8630 1.4966 3.2332 33 1 6.0769 -1.9724 2.2371 34 1 7.3888 1.4800 -0.0315 35 1 6.1565 1.4107 -2.1550 36 1 3.6726 1.2533 -4.4598 37 1 4.9160 2.2161 -3.6264 38 1 5.0103 0.4387 -3.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:03 Heat of formation + Delta-G solvation = -72.529077 kcal Electronic energy + Delta-G solvation = -29888.491049 eV Core-core repulsion = 25418.684157 eV Total energy + Delta-G solvation = -4469.806892 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.096 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -48.59868 -40.55112 -39.58424 -38.42293 -36.50423 -36.18456 -35.16829 -34.77269 -33.55878 -31.31432 -30.88027 -28.25454 -27.83023 -27.25197 -26.82682 -24.13666 -22.21458 -21.66981 -20.73803 -19.07972 -18.46707 -17.67405 -17.59404 -17.24479 -16.76566 -16.45085 -16.14223 -15.75856 -15.66354 -15.47839 -15.17656 -15.00106 -14.49510 -13.88702 -13.63207 -13.18147 -12.88389 -12.74741 -12.67745 -12.49737 -12.45411 -12.28043 -12.20600 -12.08678 -11.84998 -11.73215 -11.68727 -11.60496 -11.37558 -11.27639 -11.05309 -10.96599 -10.74989 -10.63646 -10.40813 -10.17286 -9.62655 -8.75155 -8.22702 -7.77332 -6.69725 -5.53547 1.09415 1.53941 2.13488 2.19802 2.64477 2.71379 2.74331 2.83852 3.15593 3.32267 3.76028 3.80695 3.87860 4.01620 4.15116 4.32058 4.52009 4.79459 4.95991 5.02577 5.08147 5.10511 5.12105 5.16068 5.29349 5.36352 5.43258 5.47734 5.50742 5.74467 6.01348 6.14594 6.27373 6.33913 6.41933 6.43086 6.62827 6.95926 7.15095 7.34902 7.55909 7.67849 7.77005 8.12686 8.36023 8.91387 9.06809 9.13817 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.004409 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.830291 B = 6348.803894 C = 7134.821525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.347 6.347 3 C 0.536 3.464 4 O -0.495 6.495 5 C -0.141 4.141 6 C 0.096 3.904 7 F -0.129 7.129 8 C 0.205 3.795 9 N -0.654 5.654 10 C 0.381 3.619 11 C -0.382 4.382 12 H 0.113 0.887 13 C 0.070 3.930 14 N -0.715 5.715 15 Si 0.921 3.079 16 H -0.257 1.257 17 H -0.265 1.265 18 H -0.247 1.247 19 C -0.309 4.309 20 C 0.325 3.675 21 N -0.532 5.532 22 C 0.308 3.692 23 N -0.530 5.530 24 C -0.096 4.096 25 C -0.171 4.171 26 C 0.125 3.875 27 O -0.318 6.318 28 C 0.029 3.971 29 H 0.101 0.899 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.407 0.593 33 H 0.304 0.696 34 H 0.155 0.845 35 H 0.140 0.860 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.837 -7.595 -11.295 16.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.264 6.264 3 C 0.379 3.621 4 O -0.381 6.381 5 C -0.144 4.144 6 C 0.072 3.928 7 F -0.107 7.107 8 C 0.101 3.899 9 N -0.276 5.276 10 C 0.277 3.723 11 C -0.410 4.410 12 H 0.131 0.869 13 C -0.161 4.161 14 N -0.333 5.333 15 Si 0.742 3.258 16 H -0.182 1.182 17 H -0.189 1.189 18 H -0.170 1.170 19 C -0.328 4.328 20 C 0.017 3.983 21 N -0.214 5.214 22 C 0.000 4.000 23 N -0.212 5.212 24 C -0.118 4.118 25 C -0.191 4.191 26 C 0.078 3.922 27 O -0.231 6.231 28 C -0.066 4.066 29 H 0.119 0.881 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.244 0.756 33 H 0.116 0.884 34 H 0.172 0.828 35 H 0.157 0.843 36 H 0.116 0.884 37 H 0.076 0.924 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.491 -6.121 -10.623 14.914 hybrid contribution -0.383 -1.068 0.044 1.136 sum -8.875 -7.189 -10.580 15.568 Atomic orbital electron populations 1.23273 0.76539 1.03594 1.02515 1.86691 1.23124 1.32691 1.83860 1.20688 0.88417 0.81581 0.71447 1.90843 1.66514 1.36141 1.44640 1.17706 0.89337 1.16020 0.91371 1.16405 0.87977 1.08907 0.79547 1.91470 1.80556 1.94154 1.44547 1.17197 0.87748 0.97087 0.87893 1.41283 1.04180 1.76945 1.05162 1.16716 0.79888 0.88687 0.86992 1.20339 0.99948 0.91852 1.28818 0.86945 1.26468 0.93938 1.01662 0.94068 1.69485 1.11097 1.27270 1.25448 0.85984 0.80208 0.78990 0.80605 1.18164 1.18935 1.17013 1.12948 0.83517 1.01395 1.34898 1.24686 0.91244 0.91596 0.90794 1.81085 1.12146 1.11184 1.16957 1.25155 0.92523 0.91425 0.90892 1.81065 1.09534 1.12865 1.17704 1.20866 1.01624 1.00246 0.89092 1.20940 0.91590 1.07085 0.99441 1.18091 0.89955 1.00179 0.83960 1.85971 1.35778 1.89001 1.12389 1.23060 0.97043 1.01683 0.84771 0.88095 0.91874 0.91888 0.75621 0.88367 0.82775 0.84275 0.88444 0.92351 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.57 101.05 1.07 1.45 16 2 O -0.35 -5.39 10.58 -40.66 -0.43 -5.82 16 3 C 0.54 9.51 6.56 34.40 0.23 9.73 16 4 O -0.49 -9.63 16.90 -19.29 -0.33 -9.96 16 5 C -0.14 -2.48 5.76 -104.84 -0.60 -3.08 16 6 C 0.10 1.75 7.30 -38.76 -0.28 1.47 16 7 F -0.13 -2.42 16.20 2.25 0.04 -2.39 16 8 C 0.21 3.64 5.18 -83.62 -0.43 3.21 16 9 N -0.65 -12.20 3.32 -8.12 -0.03 -12.22 16 10 C 0.38 7.35 4.97 -83.57 -0.42 6.94 16 11 C -0.38 -7.06 6.87 -38.31 -0.26 -7.33 16 12 H 0.11 2.09 7.02 -52.49 -0.37 1.73 16 13 C 0.07 1.22 4.79 -17.21 -0.08 1.14 16 14 N -0.71 -12.79 11.02 55.59 0.61 -12.18 16 15 Si 0.92 13.58 29.58 -169.99 -5.03 8.55 16 16 H -0.26 -3.91 7.11 56.52 0.40 -3.51 16 17 H -0.27 -3.89 7.11 56.52 0.40 -3.48 16 18 H -0.25 -3.62 7.11 56.52 0.40 -3.22 16 19 C -0.31 -6.41 5.88 -104.93 -0.62 -7.03 16 20 C 0.32 7.04 13.91 -22.46 -0.31 6.73 16 21 N -0.53 -12.04 18.54 41.85 0.78 -11.26 16 22 C 0.31 6.78 14.80 -22.50 -0.33 6.45 16 23 N -0.53 -12.35 18.53 41.81 0.77 -11.57 16 24 C -0.10 -1.53 8.57 -39.36 -0.34 -1.86 16 25 C -0.17 -2.37 9.02 -39.50 -0.36 -2.73 16 26 C 0.13 1.94 6.70 -38.70 -0.26 1.68 16 27 O -0.32 -4.44 9.94 -18.88 -0.19 -4.63 16 28 C 0.03 0.26 9.81 101.05 0.99 1.25 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.41 7.72 8.29 -40.82 -0.34 7.38 16 33 H 0.30 5.02 8.29 -40.82 -0.34 4.69 16 34 H 0.15 2.40 6.15 -52.49 -0.32 2.08 16 35 H 0.14 1.46 6.28 -52.48 -0.33 1.13 16 36 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.46 7.65 -51.93 -0.40 0.06 16 38 H 0.06 0.45 7.67 -51.93 -0.40 0.05 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -26.70 360.53 -3.36 -30.06 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -2.98 Total: 7.97 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: -2.01 Total: 18.02 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 2.14 Total: -47.23 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.94 Total: -20.41 kcal Atomic # 9 Polarization: -2.42 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 13.58 SS G_CDS: -5.03 Total: 8.55 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -26.70 -3.36 -30.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.468 kcal (2) G-P(sol) polarization free energy of solvation -26.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds