Wall clock time and date at job start Wed Apr 1 2020 02:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34761 * 117.00297 * 2 1 4 4 O 1.21526 * 119.99782 * 359.97438 * 3 2 1 5 5 C 1.47264 * 119.99952 * 180.27726 * 3 2 1 6 6 C 1.39934 * 120.17976 * 269.72276 * 5 3 2 7 7 F 1.35097 * 120.12186 * 359.97438 * 6 5 3 8 8 C 1.38738 * 119.76372 * 180.02562 * 6 5 3 9 9 N 1.40115 * 119.93364 * 180.02562 * 8 6 5 10 10 C 1.38220 * 120.00016 * 173.87765 * 9 8 6 11 11 C 1.39033 * 119.99918 * 299.80116 * 10 9 8 12 12 H 1.07996 * 120.00533 * 158.69437 * 11 10 9 13 13 C 1.40823 * 119.99586 * 338.69501 * 11 10 9 14 14 N 1.30337 * 120.00324 * 350.87080 * 13 11 10 15 15 Si 1.86798 * 119.99661 * 170.87615 * 13 11 10 16 16 H 1.48500 * 109.47594 * 89.99855 * 15 13 11 17 17 H 1.48498 * 109.47032 * 209.99702 * 15 13 11 18 18 H 1.48498 * 109.47098 * 329.99725 * 15 13 11 19 19 C 1.41180 * 120.00193 * 119.80329 * 10 9 8 20 20 C 1.43207 * 119.99767 * 185.26274 * 19 10 9 21 21 N 9.45434 * 152.32056 * 321.69903 * 3 1 2 22 22 C 1.43193 * 120.00223 * 5.25615 * 19 10 9 23 23 N 8.37100 * 134.15969 * 43.13441 * 2 1 3 24 24 C 1.38966 * 120.13349 * 359.97438 * 8 6 5 25 25 C 1.38118 * 120.36975 * 0.02562 * 24 8 6 26 26 C 1.38575 * 120.23829 * 359.72030 * 25 24 8 27 27 O 1.35723 * 120.07158 * 180.29951 * 26 25 24 28 28 C 1.42900 * 117.00290 * 0.23155 * 27 26 25 29 29 H 1.08997 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46838 * 300.00232 * 1 2 3 31 31 H 1.08994 * 109.46705 * 59.99967 * 1 2 3 32 32 H 0.96996 * 120.00212 * 353.86734 * 9 8 6 33 33 H 0.97003 * 120.00315 * 185.05302 * 14 13 11 34 34 H 1.07993 * 119.81465 * 180.02562 * 24 8 6 35 35 H 1.08003 * 119.87884 * 179.97438 * 25 24 8 36 36 H 1.08996 * 109.47274 * 180.02562 * 28 27 26 37 37 H 1.09003 * 109.47049 * 300.00681 * 28 27 26 38 38 H 1.09003 * 109.46776 * 59.99853 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2007 0.0000 4 8 1.4021 2.2199 -0.0005 5 6 3.5345 1.2777 -0.0062 6 6 4.2420 1.3177 1.2005 7 9 3.5783 1.2863 2.3768 8 6 5.6273 1.3907 1.1846 9 7 6.3392 1.4304 2.3908 10 6 7.7203 1.3753 2.3803 11 6 8.3679 0.2720 1.8360 12 1 9.3942 0.3546 1.5100 13 6 7.6856 -0.9534 1.7099 14 7 6.5145 -1.1070 2.2609 15 14 8.4591 -2.3589 0.7529 16 1 9.2759 -3.1926 1.6711 17 1 7.3900 -3.1923 0.1467 18 1 9.3264 -1.8090 -0.3198 19 6 8.4734 2.4395 2.9222 20 6 9.9011 2.4358 2.8107 21 7 11.0339 2.4317 2.7220 22 6 7.8096 3.5225 3.5831 23 7 7.2838 4.3824 4.1059 24 6 6.3104 1.4235 -0.0251 25 6 5.6177 1.3844 -1.2194 26 6 4.2342 1.3061 -1.2215 27 8 3.5572 1.2616 -2.3970 28 6 4.3351 1.2943 -3.5953 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8900 32 1 5.8630 1.4966 3.2332 33 1 6.0769 -1.9724 2.2371 34 1 7.3888 1.4800 -0.0315 35 1 6.1565 1.4107 -2.1550 36 1 3.6726 1.2533 -4.4598 37 1 4.9160 2.2161 -3.6264 38 1 5.0103 0.4387 -3.6135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082853.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:02 Heat of formation + Delta-G solvation = -86.117950 kcal Electronic energy + Delta-G solvation = -29889.080307 eV Core-core repulsion = 25418.684157 eV Total energy + Delta-G solvation = -4470.396150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.096 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.99161 -41.78891 -40.80235 -39.71239 -37.85088 -37.52901 -36.72259 -36.50026 -34.96096 -32.64971 -32.22732 -29.44142 -28.87296 -28.70004 -27.80010 -25.37875 -23.57935 -22.92819 -22.08078 -20.59174 -19.68388 -19.08193 -18.84679 -18.65235 -18.05483 -17.79512 -17.44951 -16.85613 -16.84133 -16.67713 -16.41651 -16.35122 -15.62201 -15.20916 -14.81242 -14.54523 -14.36636 -14.32883 -13.88008 -13.82409 -13.68553 -13.56698 -13.44696 -13.36838 -13.31522 -13.13129 -13.07807 -13.01233 -12.69717 -12.64801 -12.34084 -12.28677 -11.92327 -11.88296 -11.68517 -11.48750 -10.88341 -10.01824 -9.70341 -9.12914 -8.06095 -7.10936 -0.17498 0.24751 0.76946 0.86209 1.43407 1.55797 1.60349 1.65093 2.07477 2.12291 2.14431 2.26484 2.34934 2.54792 2.65952 2.75979 3.25866 3.43473 3.61997 3.84805 3.90521 4.04049 4.13473 4.25514 4.28659 4.39363 4.51114 4.51663 4.62990 4.68330 4.74433 4.78377 4.84525 5.11128 5.16880 5.20654 5.36087 5.45842 5.72297 6.06551 6.20591 6.31434 6.48956 6.69272 6.87588 7.22606 7.37977 7.76981 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010509 B = 0.004409 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2663.830291 B = 6348.803894 C = 7134.821525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.354 6.354 3 C 0.537 3.463 4 O -0.523 6.523 5 C -0.165 4.165 6 C 0.077 3.923 7 F -0.141 7.141 8 C 0.190 3.810 9 N -0.659 5.659 10 C 0.377 3.623 11 C -0.368 4.368 12 H 0.114 0.886 13 C 0.048 3.952 14 N -0.722 5.722 15 Si 0.974 3.026 16 H -0.263 1.263 17 H -0.260 1.260 18 H -0.240 1.240 19 C -0.324 4.324 20 C 0.332 3.668 21 N -0.555 5.555 22 C 0.315 3.685 23 N -0.563 5.563 24 C -0.098 4.098 25 C -0.155 4.155 26 C 0.134 3.866 27 O -0.334 6.334 28 C 0.015 3.985 29 H 0.138 0.862 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.400 0.600 33 H 0.312 0.688 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.120 0.880 37 H 0.071 0.929 38 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 -9.545 -13.910 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.270 6.270 3 C 0.381 3.619 4 O -0.413 6.413 5 C -0.168 4.168 6 C 0.052 3.948 7 F -0.120 7.120 8 C 0.087 3.913 9 N -0.280 5.280 10 C 0.272 3.728 11 C -0.395 4.395 12 H 0.131 0.869 13 C -0.183 4.183 14 N -0.340 5.340 15 Si 0.793 3.207 16 H -0.188 1.188 17 H -0.184 1.184 18 H -0.163 1.163 19 C -0.343 4.343 20 C 0.025 3.975 21 N -0.238 5.238 22 C 0.009 3.991 23 N -0.246 5.246 24 C -0.119 4.119 25 C -0.174 4.174 26 C 0.086 3.914 27 O -0.248 6.248 28 C -0.079 4.079 29 H 0.156 0.844 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.125 0.875 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.138 0.862 37 H 0.090 0.910 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.410 -8.075 -13.262 17.658 hybrid contribution -0.559 -0.619 0.703 1.091 sum -8.968 -8.693 -12.558 17.712 Atomic orbital electron populations 1.23666 0.74144 1.06158 1.02787 1.86672 1.25542 1.31553 1.83222 1.20820 0.88659 0.81777 0.70694 1.90813 1.67150 1.37059 1.46243 1.17943 0.89564 1.17178 0.92154 1.16572 0.88293 1.10412 0.79492 1.91424 1.80834 1.94443 1.45319 1.17369 0.87653 0.98157 0.88147 1.41225 1.03838 1.77609 1.05334 1.16705 0.80195 0.88549 0.87333 1.20542 0.99892 0.91912 1.27176 0.86851 1.27038 0.94079 1.02761 0.94445 1.69509 1.11534 1.28189 1.24777 0.85206 0.79535 0.76489 0.79492 1.18757 1.18354 1.16282 1.12992 0.83190 1.01884 1.36259 1.24778 0.91304 0.91096 0.90323 1.81076 1.12583 1.11949 1.18176 1.25376 0.91994 0.91234 0.90453 1.81049 1.10400 1.13938 1.19258 1.21049 1.01891 0.99880 0.89128 1.21308 0.91000 1.04744 1.00306 1.18223 0.90423 0.98592 0.84118 1.85980 1.37213 1.88507 1.13053 1.23491 0.97948 1.03167 0.83257 0.84393 0.92015 0.91291 0.76376 0.87522 0.82342 0.80212 0.86181 0.90998 0.90559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.57 113.37 1.20 1.72 16 2 O -0.35 -10.76 10.58 -56.72 -0.60 -11.36 16 3 C 0.54 19.06 6.56 70.20 0.46 19.52 16 4 O -0.52 -20.66 16.90 19.75 0.33 -20.33 16 5 C -0.17 -5.75 5.76 -20.00 -0.12 -5.87 16 6 C 0.08 2.82 7.30 22.80 0.17 2.99 16 7 F -0.14 -5.53 16.20 44.97 0.73 -4.80 16 8 C 0.19 6.70 5.18 38.11 0.20 6.89 16 9 N -0.66 -24.75 3.32 -179.62 -0.60 -25.35 16 10 C 0.38 14.43 4.97 39.05 0.19 14.63 16 11 C -0.37 -13.12 6.87 23.09 0.16 -12.96 16 12 H 0.11 4.03 7.02 -2.91 -0.02 4.01 16 13 C 0.05 1.57 4.79 85.55 0.41 1.98 16 14 N -0.72 -24.91 11.02 21.98 0.24 -24.67 16 15 Si 0.97 25.37 29.58 68.60 2.03 27.40 16 16 H -0.26 -7.14 7.11 99.48 0.71 -6.43 16 17 H -0.26 -6.55 7.11 99.48 0.71 -5.84 16 18 H -0.24 -6.01 7.11 99.48 0.71 -5.31 16 19 C -0.32 -13.53 5.88 -20.06 -0.12 -13.65 16 20 C 0.33 14.36 13.91 88.33 1.23 15.58 16 21 N -0.55 -24.97 18.54 19.01 0.35 -24.61 16 22 C 0.32 14.19 14.80 88.34 1.31 15.50 16 23 N -0.56 -26.90 18.53 19.00 0.35 -26.55 16 24 C -0.10 -2.93 8.57 22.42 0.19 -2.74 16 25 C -0.15 -3.84 9.02 22.32 0.20 -3.64 16 26 C 0.13 3.89 6.70 22.84 0.15 4.05 16 27 O -0.33 -8.50 9.94 -90.46 -0.90 -9.40 16 28 C 0.01 0.21 9.81 113.37 1.11 1.32 16 29 H 0.14 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.40 15.70 8.29 -92.71 -0.77 14.93 16 33 H 0.31 9.82 8.29 -92.71 -0.77 9.05 16 34 H 0.16 4.61 6.15 -2.91 -0.02 4.59 16 35 H 0.18 2.90 6.28 -2.91 -0.02 2.89 16 36 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.07 0.84 7.65 -2.39 -0.02 0.82 16 38 H 0.08 0.82 7.67 -2.39 -0.02 0.80 16 Total: -1.00 -58.43 360.53 9.10 -49.33 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 0.41 Total: 25.01 kcal Atomic # 6 Polarization: 38.58 SS G_CDS: 6.75 Total: 45.33 kcal Atomic # 7 Polarization: -101.53 SS G_CDS: 0.35 Total: -101.18 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -1.17 Total: -41.08 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.73 Total: -4.80 kcal Atomic # 14 Polarization: 25.37 SS G_CDS: 2.03 Total: 27.40 kcal Total: -58.43 9.10 -49.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082853.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.793 kcal (2) G-P(sol) polarization free energy of solvation -58.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds