Wall clock time and date at job start Wed Apr 1 2020 02:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 69.51677 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99813 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00047 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47231 * 89.99796 * 11 9 7 13 13 H 1.48499 * 109.47342 * 210.00322 * 11 9 7 14 14 H 1.48505 * 109.46935 * 330.00024 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38768 * 120.77381 * 269.71463 * 18 17 15 20 20 F 1.35100 * 120.41700 * 0.02562 * 19 18 17 21 21 C 1.38655 * 119.17174 * 179.77804 * 19 18 17 22 22 F 1.35092 * 119.62267 * 180.24967 * 21 19 18 23 23 N 1.32072 * 120.75221 * 0.51401 * 21 19 18 24 24 C 1.32067 * 121.70091 * 359.73751 * 23 21 19 25 25 F 1.35095 * 119.62615 * 180.02562 * 24 23 21 26 26 C 1.38650 * 120.75547 * 0.02562 * 24 23 21 27 27 F 1.35095 * 120.41779 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.47542 * 309.51408 * 3 2 1 29 29 H 1.09004 * 109.47171 * 189.51459 * 3 2 1 30 30 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 31 31 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 32 32 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 33 33 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 34 34 H 0.97004 * 119.99796 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5039 -1.3513 5 7 4.5833 -0.5038 -1.3511 6 6 5.3157 0.6848 -1.7948 7 6 5.5671 0.5953 -3.2780 8 1 5.2160 -0.2611 -3.8345 9 6 6.2453 1.6068 -3.9245 10 7 6.4642 1.5289 -5.2190 11 14 6.8531 3.0878 -2.9619 12 1 8.2264 2.8237 -2.4623 13 1 6.8689 4.2806 -3.8464 14 1 5.9472 3.3363 -1.8118 15 6 5.2572 -1.5972 -0.9426 16 8 6.4700 -1.5969 -0.9421 17 6 4.5037 -2.8221 -0.4921 18 6 5.4831 -3.8969 -0.0963 19 6 5.9403 -4.8187 -1.0275 20 9 5.5133 -4.7664 -2.3082 21 6 6.8448 -5.7908 -0.6283 22 9 7.2997 -6.6896 -1.5284 23 7 7.2626 -5.8514 0.6231 24 6 6.8448 -4.9939 1.5366 25 9 7.3001 -5.0942 2.8045 26 6 5.9441 -3.9920 1.2091 27 9 5.5207 -3.1188 2.1491 28 1 2.9717 -0.6530 0.7928 29 1 2.9709 1.0144 0.1699 30 1 2.7546 0.1498 -2.1440 31 1 2.7554 -1.5176 -1.5212 32 1 4.7265 1.5762 -1.5793 33 1 6.2681 0.7426 -1.2677 34 1 6.9410 2.2407 -5.6740 35 1 3.8769 -2.5690 0.3631 36 1 3.8773 -3.1836 -1.3074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177478713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:45 Heat of formation + Delta-G solvation = -128.136247 kcal Electronic energy + Delta-G solvation = -30026.495326 eV Core-core repulsion = 25012.420385 eV Total energy + Delta-G solvation = -5014.074941 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.084 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.07407 -49.97623 -49.14765 -49.07389 -40.59364 -39.50641 -37.07118 -35.60652 -34.40775 -32.87689 -31.18488 -30.56802 -29.88021 -27.71244 -24.39708 -24.28304 -23.96196 -22.22455 -19.76520 -19.19085 -18.74852 -18.50854 -17.93871 -17.66473 -17.17680 -16.96955 -16.82707 -16.43208 -16.39711 -15.99901 -15.61192 -15.35624 -15.03759 -14.95455 -14.84256 -14.76136 -14.18094 -14.12948 -13.88158 -13.51354 -13.32812 -12.95126 -12.79507 -12.68941 -12.63526 -12.46772 -12.32301 -11.89543 -11.71544 -11.20000 -11.03608 -10.89021 -10.65757 -10.36520 -10.31739 -9.70897 -9.42842 -9.20268 -8.70480 -8.13393 -6.19827 -4.20684 -0.12110 0.02475 2.16026 2.45589 2.55887 2.66656 2.80898 2.91007 3.18124 3.19107 3.22916 3.26539 3.31486 3.53980 3.74232 3.96062 4.27166 4.28567 4.40425 4.56486 4.70788 4.80591 4.89441 5.03082 5.11593 5.12959 5.18122 5.29573 5.59129 5.84021 5.87690 6.42184 6.43455 6.71916 6.96897 7.42508 7.44832 7.80492 8.29170 8.52110 8.83073 9.38686 10.93160 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.009203 B = 0.004002 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.837304 B = 6995.678079 C = 8347.777188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.214 3.786 3 C -0.051 4.051 4 C 0.112 3.888 5 N -0.585 5.585 6 C 0.215 3.785 7 C -0.536 4.536 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.893 5.893 11 Si 0.874 3.126 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.265 1.265 15 C 0.517 3.483 16 O -0.523 6.523 17 C -0.115 4.115 18 C -0.032 4.032 19 C 0.071 3.929 20 F -0.094 7.094 21 C 0.318 3.682 22 F -0.083 7.083 23 N -0.494 5.494 24 C 0.315 3.685 25 F -0.085 7.085 26 C 0.067 3.933 27 F -0.099 7.099 28 H 0.108 0.892 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.041 0.959 34 H 0.266 0.734 35 H 0.121 0.879 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.765 -11.278 13.428 18.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.116 5.116 2 C -0.104 4.104 3 C -0.093 4.093 4 C -0.014 4.014 5 N -0.316 5.316 6 C 0.095 3.905 7 C -0.574 4.574 8 H 0.095 0.905 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.701 3.299 12 H -0.199 1.199 13 H -0.210 1.210 14 H -0.189 1.189 15 C 0.302 3.698 16 O -0.399 6.399 17 C -0.155 4.155 18 C -0.041 4.041 19 C 0.048 3.952 20 F -0.072 7.072 21 C 0.162 3.838 22 F -0.062 7.062 23 N -0.213 5.213 24 C 0.160 3.840 25 F -0.064 7.064 26 C 0.043 3.957 27 F -0.077 7.077 28 H 0.126 0.874 29 H 0.136 0.864 30 H 0.120 0.880 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.139 0.861 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.126 -11.787 13.485 18.629 hybrid contribution 0.413 1.317 0.085 1.383 sum -4.713 -10.470 13.570 17.776 Atomic orbital electron populations 1.81239 1.12974 1.08967 1.08409 1.28994 0.94996 0.93117 0.93304 1.19881 0.81648 1.06341 1.01423 1.21430 0.81364 1.03072 0.95485 1.47827 1.05183 1.15417 1.63131 1.19798 0.92566 0.81531 0.96586 1.21265 1.37647 1.07597 0.90890 0.90534 1.24847 0.95110 0.98080 0.94766 1.69887 1.40950 1.33734 1.08469 0.86892 0.80197 0.82624 0.80199 1.19880 1.21017 1.18944 1.19763 0.87930 0.83560 0.78571 1.90751 1.13404 1.81938 1.53797 1.20857 0.97014 0.92331 1.05280 1.19685 0.98124 0.95937 0.90356 1.17750 0.98836 0.97151 0.81501 1.91661 1.87527 1.95463 1.32562 1.17267 0.93454 0.88636 0.84404 1.91742 1.87096 1.64665 1.62694 1.66239 1.27105 1.27214 1.00772 1.17237 0.93662 0.91964 0.81113 1.91733 1.87156 1.95063 1.32449 1.17678 0.99326 0.91635 0.87054 1.91608 1.87842 1.66197 1.62093 0.87442 0.86445 0.87992 0.90115 0.94632 0.94108 0.92399 0.86103 0.85705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.73 18.54 42.15 0.78 -4.95 16 2 C 0.21 2.16 15.43 -20.76 -0.32 1.83 16 3 C -0.05 -0.41 6.03 -29.52 -0.18 -0.59 16 4 C 0.11 1.21 5.17 -4.04 -0.02 1.19 16 5 N -0.58 -9.20 2.46 -175.06 -0.43 -9.63 16 6 C 0.21 4.40 4.23 -5.20 -0.02 4.38 16 7 C -0.54 -13.81 9.94 -34.44 -0.34 -14.15 16 8 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 9 C 0.08 2.03 5.47 -17.82 -0.10 1.94 16 10 N -0.89 -26.06 13.96 55.43 0.77 -25.28 16 11 Si 0.87 19.92 27.47 -169.99 -4.67 15.25 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 14 H -0.26 -5.50 6.54 56.52 0.37 -5.13 16 15 C 0.52 8.17 7.67 -10.98 -0.08 8.09 16 16 O -0.52 -10.76 15.61 5.55 0.09 -10.67 16 17 C -0.12 -1.19 4.11 -29.03 -0.12 -1.31 16 18 C -0.03 -0.36 4.42 -104.23 -0.46 -0.82 16 19 C 0.07 0.86 7.29 -39.23 -0.29 0.58 16 20 F -0.09 -1.22 16.51 2.25 0.04 -1.18 16 21 C 0.32 3.87 8.41 -17.29 -0.15 3.73 16 22 F -0.08 -1.01 17.20 2.25 0.04 -0.98 16 23 N -0.49 -6.17 10.38 -13.85 -0.14 -6.31 16 24 C 0.32 3.63 8.41 -17.30 -0.15 3.49 16 25 F -0.09 -0.95 17.21 2.25 0.04 -0.91 16 26 C 0.07 0.74 7.29 -39.23 -0.29 0.45 16 27 F -0.10 -1.04 16.52 2.25 0.04 -1.00 16 28 H 0.11 0.60 7.25 -51.93 -0.38 0.23 16 29 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 1.22 8.07 -51.93 -0.42 0.80 16 31 H 0.08 0.67 6.43 -51.93 -0.33 0.33 16 32 H 0.04 0.67 7.13 -51.93 -0.37 0.30 16 33 H 0.04 0.91 6.85 -51.93 -0.36 0.55 16 34 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 35 H 0.12 0.81 6.80 -51.93 -0.35 0.46 16 36 H 0.12 1.05 6.97 -51.93 -0.36 0.69 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -32.92 344.49 -3.35 -36.27 By element: Atomic # 1 Polarization: -2.02 SS G_CDS: -2.58 Total: -4.61 kcal Atomic # 6 Polarization: 11.32 SS G_CDS: -2.51 Total: 8.81 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: 0.98 Total: -46.17 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.67 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.15 Total: -4.07 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -4.67 Total: 15.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.92 -3.35 -36.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177478713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.866 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds