Wall clock time and date at job start Wed Apr 1 2020 02:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13602 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47171 * 69.51677 * 3 2 1 5 5 N 1.46506 * 109.47320 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99537 * 269.99999 * 5 4 3 7 7 C 1.50697 * 109.46949 * 269.99553 * 6 5 4 8 8 H 1.08004 * 120.00186 * 0.02562 * 7 6 5 9 9 C 1.37881 * 120.00081 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99813 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00047 * 0.02562 * 9 7 6 12 12 H 1.48497 * 109.47231 * 89.99796 * 11 9 7 13 13 H 1.48499 * 109.47342 * 210.00322 * 11 9 7 14 14 H 1.48505 * 109.46935 * 330.00024 * 11 9 7 15 15 C 1.34777 * 120.00264 * 89.99349 * 5 4 3 16 16 O 1.21283 * 119.99750 * 180.02562 * 15 5 4 17 17 C 1.50702 * 119.99928 * 0.28128 * 15 5 4 18 18 C 1.50700 * 109.46869 * 179.72354 * 17 15 5 19 19 C 1.38768 * 120.77381 * 269.71463 * 18 17 15 20 20 F 1.35100 * 120.41700 * 0.02562 * 19 18 17 21 21 C 1.38655 * 119.17174 * 179.77804 * 19 18 17 22 22 F 1.35092 * 119.62267 * 180.24967 * 21 19 18 23 23 N 1.32072 * 120.75221 * 0.51401 * 21 19 18 24 24 C 1.32067 * 121.70091 * 359.73751 * 23 21 19 25 25 F 1.35095 * 119.62615 * 180.02562 * 24 23 21 26 26 C 1.38650 * 120.75547 * 0.02562 * 24 23 21 27 27 F 1.35095 * 120.41779 * 179.97438 * 26 24 23 28 28 H 1.08997 * 109.47542 * 309.51408 * 3 2 1 29 29 H 1.09004 * 109.47171 * 189.51459 * 3 2 1 30 30 H 1.08994 * 109.47354 * 59.99917 * 4 3 2 31 31 H 1.09001 * 109.47139 * 299.99492 * 4 3 2 32 32 H 1.09001 * 109.47567 * 29.99407 * 6 5 4 33 33 H 1.09005 * 109.47076 * 149.99913 * 6 5 4 34 34 H 0.97004 * 119.99796 * 179.97438 * 10 9 7 35 35 H 1.09004 * 109.46965 * 299.72211 * 17 15 5 36 36 H 1.08994 * 109.46990 * 59.72065 * 17 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.5039 -1.3513 5 7 4.5833 -0.5038 -1.3511 6 6 5.3157 0.6848 -1.7948 7 6 5.5671 0.5953 -3.2780 8 1 5.2160 -0.2611 -3.8345 9 6 6.2453 1.6068 -3.9245 10 7 6.4642 1.5289 -5.2190 11 14 6.8531 3.0878 -2.9619 12 1 8.2264 2.8237 -2.4623 13 1 6.8689 4.2806 -3.8464 14 1 5.9472 3.3363 -1.8118 15 6 5.2572 -1.5972 -0.9426 16 8 6.4700 -1.5969 -0.9421 17 6 4.5037 -2.8221 -0.4921 18 6 5.4831 -3.8969 -0.0963 19 6 5.9403 -4.8187 -1.0275 20 9 5.5133 -4.7664 -2.3082 21 6 6.8448 -5.7908 -0.6283 22 9 7.2997 -6.6896 -1.5284 23 7 7.2626 -5.8514 0.6231 24 6 6.8448 -4.9939 1.5366 25 9 7.3001 -5.0942 2.8045 26 6 5.9441 -3.9920 1.2091 27 9 5.5207 -3.1188 2.1491 28 1 2.9717 -0.6530 0.7928 29 1 2.9709 1.0144 0.1699 30 1 2.7546 0.1498 -2.1440 31 1 2.7554 -1.5176 -1.5212 32 1 4.7265 1.5762 -1.5793 33 1 6.2681 0.7426 -1.2677 34 1 6.9410 2.2407 -5.6740 35 1 3.8769 -2.5690 0.3631 36 1 3.8773 -3.1836 -1.3074 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177478713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:44 Heat of formation + Delta-G solvation = -149.707119 kcal Electronic energy + Delta-G solvation = -30027.430709 eV Core-core repulsion = 25012.420385 eV Total energy + Delta-G solvation = -5015.010324 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 345.084 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.98188 -50.90732 -50.04644 -50.01543 -41.57347 -40.66646 -38.00295 -36.78825 -35.41309 -34.71443 -32.34365 -31.48471 -30.99134 -29.17334 -25.37539 -25.22090 -25.17956 -23.65391 -20.68633 -20.32924 -19.66549 -19.49417 -19.15491 -18.72167 -18.39753 -18.09714 -17.94355 -17.35058 -17.31632 -17.20489 -16.56041 -16.30205 -16.27277 -15.97197 -15.79721 -15.73539 -15.60117 -15.08877 -14.90513 -14.68231 -14.34253 -14.29090 -13.91310 -13.75828 -13.68300 -13.52875 -13.37425 -13.18311 -12.89811 -12.66861 -12.38554 -11.96918 -11.84881 -11.79912 -11.67251 -11.35379 -10.75688 -10.69389 -10.11790 -9.50932 -8.26210 -6.30779 -1.03337 -0.89200 1.23740 1.39997 1.44032 1.50521 1.53271 1.63230 1.80575 1.90856 1.93393 2.21915 2.27847 2.37653 2.61098 2.83372 3.08436 3.15952 3.36791 3.53037 3.60696 3.81660 4.06493 4.12416 4.17486 4.33210 4.41469 4.64076 4.85264 4.89393 4.93733 5.03779 5.14379 5.51502 5.53136 5.59391 6.28596 6.57813 6.68592 6.73749 7.23413 7.37040 8.90475 Molecular weight = 345.08amu Principal moments of inertia in cm(-1) A = 0.009203 B = 0.004002 C = 0.003353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.837304 B = 6995.678079 C = 8347.777188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C 0.245 3.755 3 C -0.040 4.040 4 C 0.105 3.895 5 N -0.587 5.587 6 C 0.221 3.779 7 C -0.532 4.532 8 H 0.032 0.968 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.940 3.060 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.223 1.223 15 C 0.510 3.490 16 O -0.579 6.579 17 C -0.108 4.108 18 C -0.032 4.032 19 C 0.066 3.934 20 F -0.102 7.102 21 C 0.313 3.687 22 F -0.087 7.087 23 N -0.507 5.507 24 C 0.315 3.685 25 F -0.083 7.083 26 C 0.079 3.921 27 F -0.091 7.091 28 H 0.144 0.856 29 H 0.129 0.871 30 H 0.087 0.913 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.027 0.973 34 H 0.265 0.735 35 H 0.168 0.832 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.028 -10.787 16.167 20.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.171 5.171 2 C -0.072 4.072 3 C -0.080 4.080 4 C -0.019 4.019 5 N -0.317 5.317 6 C 0.100 3.900 7 C -0.571 4.571 8 H 0.051 0.949 9 C -0.188 4.188 10 N -0.590 5.590 11 Si 0.763 3.237 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.146 1.146 15 C 0.298 3.702 16 O -0.459 6.459 17 C -0.147 4.147 18 C -0.041 4.041 19 C 0.042 3.958 20 F -0.080 7.080 21 C 0.158 3.842 22 F -0.066 7.066 23 N -0.227 5.227 24 C 0.160 3.840 25 F -0.062 7.062 26 C 0.055 3.945 27 F -0.069 7.069 28 H 0.161 0.839 29 H 0.147 0.853 30 H 0.106 0.894 31 H 0.129 0.871 32 H 0.082 0.918 33 H 0.045 0.955 34 H 0.074 0.926 35 H 0.186 0.814 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -6.457 -11.314 16.257 20.833 hybrid contribution 0.824 1.067 -0.801 1.568 sum -5.633 -10.248 15.456 19.381 Atomic orbital electron populations 1.81291 1.14727 1.10925 1.10163 1.29190 0.95008 0.91390 0.91629 1.19892 0.79875 1.07818 1.00452 1.21675 0.78317 1.04965 0.96956 1.47757 1.07036 1.14257 1.62617 1.19460 0.93289 0.84695 0.92605 1.21623 1.36159 1.05565 0.93712 0.94926 1.25826 0.95622 1.01779 0.95603 1.70064 1.43018 1.35166 1.10739 0.85835 0.79757 0.78250 0.79838 1.20679 1.21248 1.14579 1.20608 0.87579 0.84578 0.77391 1.90731 1.16075 1.82989 1.56101 1.20970 0.96588 0.89160 1.07947 1.19785 0.98257 0.95876 0.90195 1.17833 0.99031 0.97535 0.81357 1.91640 1.87646 1.95554 1.33175 1.17285 0.93723 0.88826 0.84376 1.91728 1.87197 1.64842 1.62841 1.66207 1.27573 1.27858 1.01021 1.17295 0.93700 0.91970 0.81020 1.91740 1.87152 1.95048 1.32254 1.17549 0.98679 0.91226 0.87021 1.91631 1.87629 1.65837 1.61780 0.83875 0.85311 0.89435 0.87131 0.91803 0.95507 0.92627 0.81413 0.83312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.72 18.54 20.00 0.37 -11.35 16 2 C 0.25 4.04 15.43 89.44 1.38 5.42 16 3 C -0.04 -0.43 6.03 28.79 0.17 -0.26 16 4 C 0.11 1.89 5.17 86.38 0.45 2.33 16 5 N -0.59 -16.95 2.46 -826.15 -2.03 -18.98 16 6 C 0.22 8.67 4.23 85.63 0.36 9.03 16 7 C -0.53 -27.75 9.94 25.60 0.25 -27.49 16 8 H 0.03 1.93 8.06 -2.91 -0.02 1.90 16 9 C 0.01 0.51 5.47 84.66 0.46 0.97 16 10 N -0.95 -57.38 13.96 21.45 0.30 -57.08 16 11 Si 0.94 40.62 27.47 68.60 1.88 42.51 16 12 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 13 H -0.29 -12.38 7.11 99.48 0.71 -11.68 16 14 H -0.22 -8.08 6.54 99.48 0.65 -7.43 16 15 C 0.51 14.96 7.67 87.66 0.67 15.63 16 16 O -0.58 -23.39 15.61 -3.04 -0.05 -23.44 16 17 C -0.11 -1.82 4.11 29.10 0.12 -1.70 16 18 C -0.03 -0.64 4.42 -19.61 -0.09 -0.73 16 19 C 0.07 1.53 7.29 22.50 0.16 1.69 16 20 F -0.10 -2.58 16.51 44.97 0.74 -1.84 16 21 C 0.31 7.46 8.41 84.76 0.71 8.18 16 22 F -0.09 -2.13 17.20 44.97 0.77 -1.36 16 23 N -0.51 -12.23 10.38 -197.74 -2.05 -14.28 16 24 C 0.32 6.77 8.41 84.76 0.71 7.48 16 25 F -0.08 -1.72 17.21 44.97 0.77 -0.95 16 26 C 0.08 1.54 7.29 22.50 0.16 1.70 16 27 F -0.09 -1.57 16.52 44.97 0.74 -0.83 16 28 H 0.14 0.66 7.25 -2.39 -0.02 0.64 16 29 H 0.13 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.09 1.88 8.07 -2.39 -0.02 1.86 16 31 H 0.11 1.34 6.43 -2.39 -0.02 1.32 16 32 H 0.06 2.17 7.13 -2.39 -0.02 2.15 16 33 H 0.03 1.15 6.85 -2.38 -0.02 1.13 16 34 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.17 1.22 6.80 -2.38 -0.02 1.21 16 36 H 0.15 1.87 6.97 -2.39 -0.02 1.85 16 Total: -1.00 -76.65 344.49 8.13 -68.52 By element: Atomic # 1 Polarization: -4.33 SS G_CDS: 1.13 Total: -3.20 kcal Atomic # 6 Polarization: 16.72 SS G_CDS: 5.54 Total: 22.26 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -3.41 Total: -101.69 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.05 Total: -23.44 kcal Atomic # 9 Polarization: -8.00 SS G_CDS: 3.03 Total: -4.97 kcal Atomic # 14 Polarization: 40.62 SS G_CDS: 1.88 Total: 42.51 kcal Total: -76.65 8.13 -68.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177478713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.187 kcal (2) G-P(sol) polarization free energy of solvation -76.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds