Wall clock time and date at job start Wed Apr 1 2020 03:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76202 * 100.00033 * 2 1 4 4 N 1.32679 * 119.05450 * 0.02562 * 3 2 1 5 5 C 1.32021 * 121.06893 * 179.72664 * 4 3 2 6 6 C 1.39451 * 119.18093 * 0.53506 * 5 4 3 7 7 O 1.35765 * 120.85914 * 179.73570 * 6 5 4 8 8 C 1.40099 * 118.27931 * 359.45716 * 6 5 4 9 9 C 1.47926 * 120.56425 * 180.29768 * 8 6 5 10 10 O 1.21585 * 119.99371 * 354.94886 * 9 8 6 11 11 N 1.34773 * 120.00467 * 174.95062 * 9 8 6 12 12 C 1.36731 * 119.99876 * 4.29543 * 11 9 8 13 13 H 1.08003 * 120.00230 * 313.92382 * 12 11 9 14 14 C 1.39136 * 119.99868 * 133.92241 * 12 11 9 15 15 N 1.31305 * 120.00072 * 167.36806 * 14 12 11 16 16 Si 1.86801 * 119.99992 * 347.36657 * 14 12 11 17 17 H 1.48501 * 109.46776 * 95.12676 * 16 14 12 18 18 H 1.48499 * 109.47465 * 215.12199 * 16 14 12 19 19 H 1.48498 * 109.47228 * 335.13061 * 16 14 12 20 20 C 1.46494 * 120.00207 * 184.30142 * 11 9 8 21 21 C 1.50699 * 109.47257 * 88.14914 * 20 11 9 22 22 C 1.38235 * 120.00598 * 272.70601 * 21 20 11 23 23 C 1.38232 * 120.00392 * 179.76497 * 22 21 20 24 24 C 1.38231 * 119.99891 * 0.51097 * 23 22 21 25 25 C 1.38237 * 120.00007 * 359.74594 * 24 23 22 26 26 C 1.38237 * 120.00125 * 359.97438 * 25 24 23 27 27 N 1.32145 * 119.05475 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46768 * 60.00164 * 1 2 3 29 29 H 1.08996 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47364 * 300.00708 * 1 2 3 31 31 H 1.07999 * 120.41174 * 180.29548 * 5 4 3 32 32 H 0.96695 * 114.00337 * 269.71920 * 7 6 5 33 33 H 0.97001 * 119.99734 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.47191 * 208.15466 * 20 11 9 35 35 H 1.09007 * 109.46996 * 328.15173 * 20 11 9 36 36 H 1.08005 * 119.99669 * 0.02562 * 22 21 20 37 37 H 1.07997 * 120.00094 * 180.23156 * 23 22 21 38 38 H 1.07998 * 120.00411 * 179.72388 * 24 23 22 39 39 H 1.08004 * 120.00222 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.99944 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0857 2.5712 0.0005 5 6 1.2691 3.8786 0.0059 6 6 2.5692 4.3828 -0.0002 7 8 2.7971 5.7212 -0.0003 8 6 3.6342 3.4725 -0.0002 9 6 5.0336 3.9520 0.0000 10 8 5.2686 5.1413 -0.0924 11 7 6.0479 3.0706 0.1027 12 6 5.7883 1.7282 0.1181 13 1 4.9983 1.3381 0.7428 14 6 6.5418 0.8648 -0.6709 15 7 6.4691 -0.4321 -0.4790 16 14 7.6570 1.5507 -2.0034 17 1 9.0357 1.6931 -1.4701 18 1 7.6687 0.6247 -3.1643 19 1 7.1535 2.8794 -2.4348 20 6 7.4287 3.5507 0.1979 21 6 7.7767 3.7962 1.6434 22 6 7.4991 5.0201 2.2231 23 6 7.8139 5.2436 3.5504 24 6 8.4158 4.2468 4.2953 25 6 8.6983 3.0247 3.7143 26 6 8.3782 2.7992 2.3885 27 7 3.3650 2.1667 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.4227 4.5494 0.0111 32 1 2.8629 6.1089 -0.8837 33 1 6.9941 -1.0340 -1.0294 34 1 8.1033 2.8013 -0.2160 35 1 7.5298 4.4799 -0.3630 36 1 7.0325 5.8003 1.6400 37 1 7.5936 6.1985 4.0042 38 1 8.6659 4.4229 5.3310 39 1 9.1690 2.2460 4.2961 40 1 8.5993 1.8445 1.9345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185175763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:24 Heat of formation + Delta-G solvation = 32.757399 kcal Electronic energy + Delta-G solvation = -28063.164593 eV Core-core repulsion = 24164.136441 eV Total energy + Delta-G solvation = -3899.028152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.71452 -39.20983 -38.01542 -37.06266 -35.02349 -33.46801 -32.24605 -30.98123 -30.40556 -30.33277 -28.70400 -26.42078 -25.35383 -24.16851 -23.66880 -22.03658 -21.19753 -19.89343 -18.35667 -18.20620 -17.73431 -16.85084 -16.26796 -15.81793 -15.39716 -15.25270 -14.75678 -14.67625 -14.40231 -14.16501 -13.94053 -13.84187 -13.54526 -13.09359 -12.94612 -12.85916 -12.61129 -12.42702 -12.31041 -12.07914 -11.64010 -11.36588 -11.23312 -11.10709 -10.85193 -10.53676 -10.39258 -10.17951 -10.13137 -10.05968 -9.39232 -9.33156 -9.12557 -8.50776 -8.43463 -8.19422 -7.71614 -7.31200 -6.44913 -4.06101 0.86290 1.25955 1.62684 1.77763 1.89217 2.48488 2.99078 3.15493 3.21206 3.44273 3.88235 4.06600 4.18970 4.34028 4.42298 4.55157 4.86401 5.12400 5.21404 5.30749 5.31601 5.32552 5.34977 5.40415 5.44304 5.64405 5.77931 5.92501 5.98136 6.07517 6.13747 6.23028 6.41542 6.46551 6.55570 6.92344 6.93737 7.12290 7.19423 7.26135 7.48189 7.85770 7.96760 8.22486 8.47104 8.87767 9.20678 9.49262 10.61013 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.004908 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.356386 B = 5703.230816 C = 6752.074434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 S 0.027 5.973 3 C 0.264 3.736 4 N -0.518 5.518 5 C 0.122 3.878 6 C 0.034 3.966 7 O -0.464 6.464 8 C 0.141 3.859 9 C 0.514 3.486 10 O -0.576 6.576 11 N -0.425 5.425 12 C -0.305 4.305 13 H 0.136 0.864 14 C 0.070 3.930 15 N -0.843 5.843 16 Si 0.864 3.136 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.262 1.262 20 C 0.133 3.867 21 C -0.086 4.086 22 C -0.099 4.099 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.129 4.129 26 C -0.092 4.092 27 N -0.402 5.402 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.170 0.830 32 H 0.389 0.611 33 H 0.276 0.724 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.128 0.872 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.117 0.883 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.116 4.234 1.847 6.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 S 0.261 5.739 3 C -0.111 4.111 4 N -0.238 5.238 5 C -0.048 4.048 6 C -0.021 4.021 7 O -0.271 6.271 8 C -0.010 4.010 9 C 0.303 3.697 10 O -0.460 6.460 11 N -0.142 5.142 12 C -0.434 4.434 13 H 0.153 0.847 14 C -0.138 4.138 15 N -0.477 5.477 16 Si 0.691 3.309 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.186 1.186 20 C 0.011 3.989 21 C -0.087 4.087 22 C -0.118 4.118 23 C -0.149 4.149 24 C -0.146 4.146 25 C -0.147 4.147 26 C -0.110 4.110 27 N -0.122 5.122 28 H 0.104 0.896 29 H 0.118 0.882 30 H 0.104 0.896 31 H 0.187 0.813 32 H 0.246 0.754 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.146 0.854 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.135 0.865 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.354 2.588 2.330 5.575 hybrid contribution -0.137 2.123 -1.205 2.446 sum -4.491 4.711 1.125 6.605 Atomic orbital electron populations 1.23554 0.96626 1.05686 1.06564 1.86359 1.03651 0.93272 1.90649 1.25246 0.87818 1.00776 0.97266 1.68530 1.35087 1.03676 1.16515 1.23435 0.95718 0.91592 0.94022 1.20064 0.92856 0.85696 1.03435 1.84781 1.93721 1.15610 1.33035 1.22343 0.95662 0.88586 0.94411 1.17664 0.83396 0.85708 0.82889 1.90657 1.83624 1.15673 1.56018 1.43742 1.03140 1.07270 1.60059 1.19807 1.19860 0.78511 1.25224 0.84722 1.25424 0.96831 0.95050 0.96516 1.69614 1.38510 1.02106 1.37507 0.87105 0.80946 0.80168 0.82709 1.19803 1.21047 1.18565 1.20731 0.85326 1.00312 0.92531 1.20191 0.97968 0.93800 0.96747 1.21240 0.98261 0.97233 0.95053 1.21051 1.00360 0.99043 0.94495 1.21040 1.00224 0.94028 0.99281 1.21066 1.01318 0.97050 0.95246 1.21154 0.97261 0.98634 0.93982 1.69882 1.17992 1.14235 1.10051 0.89633 0.88157 0.89617 0.81258 0.75403 0.91343 0.90484 0.89981 0.85444 0.86699 0.86837 0.86522 0.85726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.61 101.05 0.97 -0.89 16 2 S 0.03 0.47 22.89 -107.50 -2.46 -1.99 16 3 C 0.26 5.17 7.84 -91.09 -0.71 4.46 16 4 N -0.52 -8.88 9.09 -13.35 -0.12 -9.00 16 5 C 0.12 1.92 11.28 -17.02 -0.19 1.72 16 6 C 0.03 0.63 6.78 -38.43 -0.26 0.37 16 7 O -0.46 -7.73 11.75 -40.28 -0.47 -8.21 16 8 C 0.14 3.10 6.69 -82.55 -0.55 2.55 16 9 C 0.51 12.11 7.61 -12.29 -0.09 12.01 16 10 O -0.58 -13.55 14.19 -15.99 -0.23 -13.78 16 11 N -0.42 -10.12 2.04 -117.16 -0.24 -10.36 16 12 C -0.30 -7.78 8.05 -15.03 -0.12 -7.90 16 13 H 0.14 3.76 6.09 -52.48 -0.32 3.44 16 14 C 0.07 1.80 5.40 -17.44 -0.09 1.70 16 15 N -0.84 -22.30 13.95 55.51 0.77 -21.52 16 16 Si 0.86 19.75 24.83 -169.99 -4.22 15.53 16 17 H -0.27 -5.89 6.83 56.52 0.39 -5.50 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 H -0.26 -6.10 7.05 56.52 0.40 -5.70 16 20 C 0.13 2.88 4.16 -5.20 -0.02 2.86 16 21 C -0.09 -1.72 5.45 -104.62 -0.57 -2.29 16 22 C -0.10 -1.86 9.71 -39.58 -0.38 -2.24 16 23 C -0.13 -2.13 10.05 -39.59 -0.40 -2.53 16 24 C -0.13 -1.95 10.05 -39.58 -0.40 -2.34 16 25 C -0.13 -2.10 10.05 -39.58 -0.40 -2.50 16 26 C -0.09 -1.73 9.69 -39.58 -0.38 -2.12 16 27 N -0.40 -9.03 6.47 -10.00 -0.06 -9.10 16 28 H 0.08 1.01 8.11 -51.91 -0.42 0.59 16 29 H 0.10 0.95 8.14 -51.92 -0.42 0.53 16 30 H 0.08 1.02 8.11 -51.92 -0.42 0.60 16 31 H 0.17 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.39 4.88 9.06 45.56 0.41 5.29 16 33 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.08 1.68 3.73 -51.93 -0.19 1.48 16 35 H 0.08 1.73 7.38 -51.93 -0.38 1.35 16 36 H 0.13 2.45 7.37 -52.48 -0.39 2.06 16 37 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 39 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 40 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 LS Contribution 355.20 15.07 5.35 5.35 Total: -1.00 -30.22 355.20 -8.69 -38.91 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: -3.40 Total: 11.31 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: -3.61 Total: 2.86 kcal Atomic # 7 Polarization: -50.34 SS G_CDS: 0.35 Total: -49.99 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.70 Total: -21.99 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -4.22 Total: 15.53 kcal Atomic # 16 Polarization: 0.47 SS G_CDS: -2.46 Total: -1.99 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.22 -8.69 -38.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185175763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.672 kcal (2) G-P(sol) polarization free energy of solvation -30.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds