Wall clock time and date at job start Wed Apr 1 2020 03:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80999 * 1 3 3 C 1.76202 * 100.00033 * 2 1 4 4 N 1.32679 * 119.05450 * 0.02562 * 3 2 1 5 5 C 1.32021 * 121.06893 * 179.72664 * 4 3 2 6 6 C 1.39451 * 119.18093 * 0.53506 * 5 4 3 7 7 O 1.35765 * 120.85914 * 179.73570 * 6 5 4 8 8 C 1.40099 * 118.27931 * 359.45716 * 6 5 4 9 9 C 1.47926 * 120.56425 * 180.29768 * 8 6 5 10 10 O 1.21585 * 119.99371 * 354.94886 * 9 8 6 11 11 N 1.34773 * 120.00467 * 174.95062 * 9 8 6 12 12 C 1.36731 * 119.99876 * 4.29543 * 11 9 8 13 13 H 1.08003 * 120.00230 * 313.92382 * 12 11 9 14 14 C 1.39136 * 119.99868 * 133.92241 * 12 11 9 15 15 N 1.31305 * 120.00072 * 167.36806 * 14 12 11 16 16 Si 1.86801 * 119.99992 * 347.36657 * 14 12 11 17 17 H 1.48501 * 109.46776 * 95.12676 * 16 14 12 18 18 H 1.48499 * 109.47465 * 215.12199 * 16 14 12 19 19 H 1.48498 * 109.47228 * 335.13061 * 16 14 12 20 20 C 1.46494 * 120.00207 * 184.30142 * 11 9 8 21 21 C 1.50699 * 109.47257 * 88.14914 * 20 11 9 22 22 C 1.38235 * 120.00598 * 272.70601 * 21 20 11 23 23 C 1.38232 * 120.00392 * 179.76497 * 22 21 20 24 24 C 1.38231 * 119.99891 * 0.51097 * 23 22 21 25 25 C 1.38237 * 120.00007 * 359.74594 * 24 23 22 26 26 C 1.38237 * 120.00125 * 359.97438 * 25 24 23 27 27 N 1.32145 * 119.05475 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46768 * 60.00164 * 1 2 3 29 29 H 1.08996 * 109.46962 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47364 * 300.00708 * 1 2 3 31 31 H 1.07999 * 120.41174 * 180.29548 * 5 4 3 32 32 H 0.96695 * 114.00337 * 269.71920 * 7 6 5 33 33 H 0.97001 * 119.99734 * 179.97438 * 15 14 12 34 34 H 1.08995 * 109.47191 * 208.15466 * 20 11 9 35 35 H 1.09007 * 109.46996 * 328.15173 * 20 11 9 36 36 H 1.08005 * 119.99669 * 0.02562 * 22 21 20 37 37 H 1.07997 * 120.00094 * 180.23156 * 23 22 21 38 38 H 1.07998 * 120.00411 * 179.72388 * 24 23 22 39 39 H 1.08004 * 120.00222 * 179.97438 * 25 24 23 40 40 H 1.07998 * 119.99944 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0857 2.5712 0.0005 5 6 1.2691 3.8786 0.0059 6 6 2.5692 4.3828 -0.0002 7 8 2.7971 5.7212 -0.0003 8 6 3.6342 3.4725 -0.0002 9 6 5.0336 3.9520 0.0000 10 8 5.2686 5.1413 -0.0924 11 7 6.0479 3.0706 0.1027 12 6 5.7883 1.7282 0.1181 13 1 4.9983 1.3381 0.7428 14 6 6.5418 0.8648 -0.6709 15 7 6.4691 -0.4321 -0.4790 16 14 7.6570 1.5507 -2.0034 17 1 9.0357 1.6931 -1.4701 18 1 7.6687 0.6247 -3.1643 19 1 7.1535 2.8794 -2.4348 20 6 7.4287 3.5507 0.1979 21 6 7.7767 3.7962 1.6434 22 6 7.4991 5.0201 2.2231 23 6 7.8139 5.2436 3.5504 24 6 8.4158 4.2468 4.2953 25 6 8.6983 3.0247 3.7143 26 6 8.3782 2.7992 2.3885 27 7 3.3650 2.1667 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 0.4227 4.5494 0.0111 32 1 2.8629 6.1089 -0.8837 33 1 6.9941 -1.0340 -1.0294 34 1 8.1033 2.8013 -0.2160 35 1 7.5298 4.4799 -0.3630 36 1 7.0325 5.8003 1.6400 37 1 7.5936 6.1985 4.0042 38 1 8.6659 4.4229 5.3310 39 1 9.1690 2.2460 4.2961 40 1 8.5993 1.8445 1.9345 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185175763.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:23 Heat of formation + Delta-G solvation = 14.460952 kcal Electronic energy + Delta-G solvation = -28063.957986 eV Core-core repulsion = 24164.136441 eV Total energy + Delta-G solvation = -3899.821546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.24327 -40.77985 -39.55486 -38.46786 -36.81195 -34.97522 -34.07641 -32.52264 -31.77385 -31.74534 -29.74803 -27.97282 -27.14778 -25.75543 -25.14790 -23.40253 -22.63257 -21.55522 -20.07770 -19.58969 -19.26075 -18.39122 -17.81126 -17.40017 -17.02123 -16.80010 -16.31551 -16.06480 -15.87163 -15.75017 -15.45663 -15.31219 -14.87062 -14.55974 -14.35828 -14.20818 -14.17319 -13.99492 -13.59516 -13.47551 -13.28548 -12.97465 -12.73721 -12.64676 -12.35854 -12.01192 -11.99883 -11.81217 -11.72558 -11.43440 -11.16153 -10.91551 -10.82498 -10.08408 -9.79438 -9.66310 -9.48315 -8.68077 -8.36235 -6.03108 -0.65919 -0.15075 0.28158 0.40251 0.52779 1.15245 1.26966 1.34369 1.34948 1.78113 2.17306 2.29934 2.64029 2.85762 2.97314 3.07251 3.17726 3.60314 3.72553 3.85283 3.91658 3.93275 4.17216 4.25791 4.31131 4.40977 4.43393 4.44165 4.61613 4.70234 4.77095 4.96780 5.05143 5.10010 5.18661 5.43043 5.58956 5.60760 5.68283 5.76966 6.11703 6.14565 6.45333 6.65233 6.73293 7.00938 7.31937 7.63261 8.73024 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.004908 C = 0.004146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.356386 B = 5703.230816 C = 6752.074434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.021 6.021 3 C 0.251 3.749 4 N -0.500 5.500 5 C 0.144 3.856 6 C 0.045 3.955 7 O -0.467 6.467 8 C 0.103 3.897 9 C 0.512 3.488 10 O -0.580 6.580 11 N -0.438 5.438 12 C -0.301 4.301 13 H 0.107 0.893 14 C 0.039 3.961 15 N -0.884 5.884 16 Si 0.906 3.094 17 H -0.256 1.256 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.134 3.866 21 C -0.108 4.108 22 C -0.115 4.115 23 C -0.128 4.128 24 C -0.117 4.117 25 C -0.127 4.127 26 C -0.113 4.113 27 N -0.437 5.437 28 H 0.092 0.908 29 H 0.130 0.870 30 H 0.091 0.909 31 H 0.225 0.775 32 H 0.409 0.591 33 H 0.277 0.723 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.844 5.987 3.169 9.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.212 5.788 3 C -0.124 4.124 4 N -0.220 5.220 5 C -0.027 4.027 6 C -0.010 4.010 7 O -0.278 6.278 8 C -0.047 4.047 9 C 0.302 3.698 10 O -0.464 6.464 11 N -0.156 5.156 12 C -0.430 4.430 13 H 0.124 0.876 14 C -0.166 4.166 15 N -0.521 5.521 16 Si 0.733 3.267 17 H -0.182 1.182 18 H -0.211 1.211 19 H -0.197 1.197 20 C 0.013 3.987 21 C -0.109 4.109 22 C -0.134 4.134 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.145 4.145 26 C -0.131 4.131 27 N -0.157 5.157 28 H 0.111 0.889 29 H 0.149 0.851 30 H 0.110 0.890 31 H 0.241 0.759 32 H 0.269 0.731 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.133 0.867 37 H 0.163 0.837 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.048 4.340 3.641 8.287 hybrid contribution 0.135 1.780 -1.520 2.345 sum -5.913 6.120 2.121 8.770 Atomic orbital electron populations 1.23630 0.91638 1.07849 1.07114 1.86508 1.09152 0.92716 1.90378 1.25467 0.87420 1.01889 0.97593 1.68658 1.33784 1.04149 1.15386 1.24229 0.96042 0.91493 0.90948 1.20151 0.92883 0.85858 1.02123 1.84724 1.93673 1.14576 1.34786 1.22378 0.95755 0.89628 0.96894 1.18101 0.84395 0.85680 0.81670 1.90619 1.84262 1.15728 1.55838 1.43774 1.03994 1.06698 1.61182 1.19385 1.19237 0.79267 1.25151 0.87633 1.25777 0.97985 0.95105 0.97716 1.69681 1.40538 1.02883 1.39027 0.86433 0.80613 0.78786 0.80900 1.18169 1.21119 1.19718 1.20705 0.84299 0.99586 0.94151 1.20126 0.99741 0.95033 0.96021 1.21229 0.99252 0.96428 0.96446 1.21416 0.99210 1.00644 0.93311 1.21496 0.98271 0.92806 1.00949 1.21409 1.00469 0.98452 0.94125 1.21177 0.98520 0.97931 0.95509 1.69706 1.19996 1.14894 1.11111 0.88902 0.85137 0.88990 0.75920 0.73095 0.91294 0.91249 0.90304 0.86663 0.83692 0.82735 0.83804 0.87259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 9.61 113.37 1.09 -1.80 16 2 S -0.02 -0.72 22.89 -56.49 -1.29 -2.01 16 3 C 0.25 9.81 7.84 180.51 1.42 11.22 16 4 N -0.50 -15.99 9.09 -196.14 -1.78 -17.77 16 5 C 0.14 4.04 11.28 84.96 0.96 4.99 16 6 C 0.05 1.57 6.78 23.01 0.16 1.72 16 7 O -0.47 -14.50 11.75 -70.57 -0.83 -15.33 16 8 C 0.10 4.59 6.69 41.94 0.28 4.87 16 9 C 0.51 24.82 7.61 86.81 0.66 25.49 16 10 O -0.58 -27.72 14.19 16.36 0.23 -27.49 16 11 N -0.44 -21.84 2.04 -642.84 -1.31 -23.15 16 12 C -0.30 -16.26 8.05 84.15 0.68 -15.58 16 13 H 0.11 6.30 6.09 -2.91 -0.02 6.28 16 14 C 0.04 2.08 5.40 84.99 0.46 2.54 16 15 N -0.88 -49.40 13.95 21.69 0.30 -49.10 16 16 Si 0.91 42.50 24.83 68.60 1.70 44.21 16 17 H -0.26 -11.20 6.83 99.48 0.68 -10.52 16 18 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.27 -13.06 7.05 99.48 0.70 -12.36 16 20 C 0.13 6.08 4.16 85.63 0.36 6.44 16 21 C -0.11 -4.46 5.45 -19.87 -0.11 -4.57 16 22 C -0.11 -4.30 9.71 22.27 0.22 -4.09 16 23 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 24 C -0.12 -3.21 10.05 22.27 0.22 -2.99 16 25 C -0.13 -3.93 10.05 22.27 0.22 -3.70 16 26 C -0.11 -4.35 9.69 22.27 0.22 -4.13 16 27 N -0.44 -20.22 6.47 -185.56 -1.20 -21.42 16 28 H 0.09 1.91 8.11 -2.39 -0.02 1.89 16 29 H 0.13 2.06 8.14 -2.40 -0.02 2.05 16 30 H 0.09 1.91 8.11 -2.40 -0.02 1.90 16 31 H 0.22 3.82 8.06 -2.91 -0.02 3.80 16 32 H 0.41 9.25 9.06 -74.06 -0.67 8.58 16 33 H 0.28 14.49 8.31 -92.71 -0.77 13.72 16 34 H 0.07 3.18 3.73 -2.39 -0.01 3.17 16 35 H 0.08 3.50 7.38 -2.38 -0.02 3.48 16 36 H 0.12 4.51 7.37 -2.91 -0.02 4.49 16 37 H 0.15 3.45 8.06 -2.91 -0.02 3.43 16 38 H 0.16 3.00 8.06 -2.91 -0.02 2.98 16 39 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 40 H 0.11 4.45 8.06 -2.91 -0.02 4.43 16 Total: -1.00 -70.16 355.20 3.28 -66.88 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.41 Total: 28.41 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 7.05 Total: 16.78 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -3.99 Total: -111.44 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.60 Total: -42.82 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 1.70 Total: 44.21 kcal Atomic # 16 Polarization: -0.72 SS G_CDS: -1.29 Total: -2.01 kcal Total: -70.16 3.28 -66.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185175763.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.342 kcal (2) G-P(sol) polarization free energy of solvation -70.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds