Wall clock time and date at job start Wed Apr 1 2020 02:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46945 * 2 1 4 4 C 1.34232 * 116.99155 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00688 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99207 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.46938 * 179.97438 * 6 4 3 8 8 C 1.46903 * 110.99859 * 66.04090 * 7 6 4 9 9 C 1.50702 * 109.47166 * 196.18345 * 8 7 6 10 10 H 1.07993 * 119.99842 * 2.69243 * 9 8 7 11 11 C 1.37882 * 119.99899 * 182.68595 * 9 8 7 12 12 N 1.31514 * 119.99888 * 354.59075 * 11 9 8 13 13 Si 1.86793 * 119.99871 * 174.58794 * 11 9 8 14 14 H 1.48502 * 109.47220 * 65.00240 * 13 11 9 15 15 H 1.48497 * 109.47531 * 185.00315 * 13 11 9 16 16 H 1.48506 * 109.47353 * 305.00592 * 13 11 9 17 17 C 1.46891 * 111.00332 * 189.99580 * 7 6 4 18 18 C 1.50700 * 109.46892 * 73.40670 * 17 7 6 19 19 C 1.38208 * 120.00885 * 254.17078 * 18 17 7 20 20 C 1.38427 * 120.04851 * 179.71975 * 19 18 17 21 21 F 1.35104 * 119.96534 * 180.27877 * 20 19 18 22 22 C 1.38475 * 120.06655 * 0.55644 * 20 19 18 23 23 C 1.38214 * 120.02026 * 359.72400 * 22 20 19 24 24 Cl 1.73603 * 120.02487 * 180.02562 * 23 22 20 25 25 C 1.38641 * 120.00967 * 74.44653 * 18 17 7 26 26 O 1.35961 * 120.03389 * 359.97438 * 25 18 17 27 27 H 1.09000 * 109.47415 * 59.99518 * 1 2 3 28 28 H 1.08998 * 109.47726 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47324 * 299.99705 * 1 2 3 30 30 H 1.09003 * 109.46615 * 240.00070 * 2 1 3 31 31 H 1.08995 * 109.47016 * 120.00315 * 2 1 3 32 32 H 1.08997 * 109.47298 * 59.99718 * 6 4 3 33 33 H 1.09003 * 109.47033 * 299.99600 * 6 4 3 34 34 H 1.08995 * 109.47566 * 316.19026 * 8 7 6 35 35 H 1.09002 * 109.46936 * 76.18597 * 8 7 6 36 36 H 0.96998 * 119.99731 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47834 * 193.40773 * 17 7 6 38 38 H 1.09004 * 109.47376 * 313.41164 * 17 7 6 39 39 H 1.07997 * 119.97662 * 0.02562 * 19 18 17 40 40 H 1.08001 * 119.98958 * 179.74320 * 22 20 19 41 41 H 0.96698 * 114.00121 * 90.00192 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3877 2.8605 -0.0001 8 6 5.8842 2.2773 -1.2537 9 6 7.3176 1.8478 -1.0749 10 1 7.7970 1.9535 -0.1130 11 6 8.0170 1.3198 -2.1394 12 7 7.4043 1.0920 -3.2806 13 14 9.8347 0.9283 -1.9607 14 1 10.0114 -0.1574 -0.9630 15 1 10.3778 0.4894 -3.2713 16 1 10.5600 2.1416 -1.5056 17 6 5.9842 4.1814 0.2384 18 6 5.8051 4.5594 1.6862 19 6 4.8719 5.5152 2.0408 20 6 4.7026 5.8588 3.3710 21 9 3.7859 6.7893 3.7162 22 6 5.4759 5.2540 4.3476 23 6 6.4141 4.3020 3.9956 24 17 7.3831 3.5431 5.2199 25 6 6.5804 3.9525 2.6623 26 8 7.5023 3.0158 2.3142 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5852 3.4690 0.8904 33 1 3.5844 3.4700 -0.8896 34 1 5.2760 1.4123 -1.5180 35 1 5.8240 3.0203 -2.0489 36 1 7.8964 0.7209 -4.0296 37 1 7.0474 4.1485 0.0004 38 1 5.4931 4.9214 -0.3936 39 1 4.2708 5.9908 1.2799 40 1 5.3457 5.5260 5.3846 41 1 8.3783 3.3781 2.1233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237804293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:33 Heat of formation + Delta-G solvation = -141.463663 kcal Electronic energy + Delta-G solvation = -28442.810741 eV Core-core repulsion = 24071.122114 eV Total energy + Delta-G solvation = -4371.688627 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.00681 -40.14363 -39.75271 -37.08854 -36.51080 -36.29673 -35.53770 -32.64370 -31.74249 -31.39231 -29.39767 -28.38931 -26.86503 -24.59527 -23.00352 -22.80776 -21.95948 -21.14542 -19.89280 -18.29715 -17.46295 -17.16442 -17.06774 -16.55225 -16.05132 -15.89971 -15.74527 -15.34687 -14.81126 -14.76514 -14.34018 -14.12108 -13.88150 -13.64547 -13.46124 -13.24418 -12.75802 -12.63341 -12.55278 -12.25412 -12.04811 -11.93433 -11.65912 -11.44453 -11.40209 -11.15899 -11.08386 -10.92990 -10.66008 -10.60691 -10.35997 -10.17017 -9.93342 -9.63966 -9.24774 -8.93339 -8.44872 -8.31366 -7.44258 -5.96371 -3.94376 0.87040 0.95609 1.98546 2.82829 2.95912 3.26843 3.36003 3.41370 3.43782 4.10543 4.19976 4.45975 4.58972 4.75344 4.90058 5.02815 5.04345 5.10290 5.19134 5.27820 5.39278 5.40448 5.56840 5.59624 5.67970 5.75310 5.77625 5.80840 5.84279 5.91515 5.98992 6.24150 6.32570 6.57833 6.84665 7.11708 7.20002 7.82422 7.86909 8.02826 8.12714 8.36697 8.55287 9.12942 9.67345 11.15284 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.006678 B = 0.005000 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4191.601903 B = 5599.186897 C = 8315.909312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.372 6.372 4 C 0.453 3.547 5 O -0.462 6.462 6 C 0.063 3.937 7 N -0.508 5.508 8 C 0.189 3.811 9 C -0.494 4.494 10 H 0.071 0.929 11 C 0.053 3.947 12 N -0.901 5.901 13 Si 0.897 3.103 14 H -0.277 1.277 15 H -0.291 1.291 16 H -0.278 1.278 17 C 0.107 3.893 18 C -0.060 4.060 19 C -0.135 4.135 20 C 0.095 3.905 21 F -0.137 7.137 22 C -0.141 4.141 23 C -0.044 4.044 24 Cl -0.051 7.051 25 C 0.144 3.856 26 O -0.456 6.456 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.047 0.953 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.108 0.892 38 H 0.040 0.960 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.183 8.763 11.806 16.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.290 6.290 4 C 0.293 3.707 5 O -0.344 6.344 6 C -0.067 4.067 7 N -0.233 5.233 8 C 0.065 3.935 9 C -0.533 4.533 10 H 0.090 0.910 11 C -0.147 4.147 12 N -0.541 5.541 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.217 1.217 16 H -0.203 1.203 17 C -0.020 4.020 18 C -0.061 4.061 19 C -0.155 4.155 20 C 0.075 3.925 21 F -0.115 7.115 22 C -0.160 4.160 23 C -0.072 4.072 24 Cl -0.022 7.022 25 C 0.097 3.903 26 O -0.266 6.266 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.069 0.931 37 H 0.126 0.874 38 H 0.058 0.942 39 H 0.160 0.840 40 H 0.162 0.838 41 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.185 7.587 12.175 16.516 hybrid contribution 0.974 0.425 -0.487 1.169 sum -7.210 8.012 11.688 15.899 Atomic orbital electron populations 1.21781 0.93133 1.02568 1.03185 1.22900 0.94780 0.80944 1.02580 1.86456 1.25500 1.31832 1.85223 1.23628 0.80008 0.93243 0.73854 1.90759 1.59529 1.42427 1.41719 1.21540 0.92153 0.90226 1.02738 1.61865 1.00382 1.19835 1.41253 1.19956 0.97141 0.94253 0.82161 1.21092 0.95532 1.40246 0.96421 0.91048 1.24970 0.98411 0.95917 0.95426 1.69963 1.36075 1.45130 1.02976 0.86588 0.85214 0.78715 0.77006 1.20308 1.21651 1.20318 1.20868 1.02920 0.90115 0.88114 1.20324 0.94839 0.93565 0.97403 1.21116 1.00034 0.99618 0.94705 1.17307 0.91026 0.91249 0.92887 1.91507 1.64048 1.63067 1.92897 1.20767 0.96890 0.98050 1.00323 1.21133 0.97897 0.98128 0.90022 1.98376 1.69671 1.80744 1.53416 1.18024 0.93919 0.89734 0.88618 1.85052 1.21983 1.30178 1.89367 0.91652 0.90594 0.91749 0.91328 0.91530 0.88450 0.91756 0.93510 0.99242 0.93078 0.87404 0.94157 0.83961 0.83834 0.75297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.29 37.16 0.38 -1.11 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.13 10.22 -39.26 -0.40 -6.53 16 4 C 0.45 8.80 7.52 36.01 0.27 9.07 16 5 O -0.46 -10.94 14.23 -18.75 -0.27 -11.21 16 6 C 0.06 1.09 5.40 -4.97 -0.03 1.06 16 7 N -0.51 -10.28 4.12 -238.96 -0.99 -11.26 16 8 C 0.19 4.76 4.29 -4.97 -0.02 4.74 16 9 C -0.49 -13.44 8.34 -34.44 -0.29 -13.73 16 10 H 0.07 1.90 7.53 -52.49 -0.40 1.50 16 11 C 0.05 1.50 5.45 -17.82 -0.10 1.40 16 12 N -0.90 -26.75 13.30 55.43 0.74 -26.01 16 13 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 14 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 16 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 17 C 0.11 1.77 4.55 -4.98 -0.02 1.75 16 18 C -0.06 -0.85 4.73 -104.48 -0.49 -1.34 16 19 C -0.14 -1.63 8.96 -39.52 -0.35 -1.99 16 20 C 0.09 1.13 7.30 -39.42 -0.29 0.84 16 21 F -0.14 -1.62 17.27 2.25 0.04 -1.58 16 22 C -0.14 -1.64 9.80 -39.50 -0.39 -2.03 16 23 C -0.04 -0.58 6.33 -39.37 -0.25 -0.83 16 24 Cl -0.05 -0.64 28.50 -51.86 -1.48 -2.12 16 25 C 0.14 2.11 6.67 -39.21 -0.26 1.85 16 26 O -0.46 -7.31 12.07 -19.62 -0.24 -7.55 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.10 1.45 6.78 -51.93 -0.35 1.10 16 33 H 0.06 1.02 8.12 -51.93 -0.42 0.60 16 34 H 0.05 1.34 5.81 -51.93 -0.30 1.03 16 35 H -0.01 -0.27 8.05 -51.93 -0.42 -0.68 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.11 1.92 7.00 -51.93 -0.36 1.56 16 38 H 0.04 0.59 7.83 -51.93 -0.41 0.19 16 39 H 0.14 1.44 7.99 -52.49 -0.42 1.02 16 40 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.39 4.69 9.06 45.56 0.41 5.10 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -33.22 371.64 -7.96 -41.17 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -4.34 Total: 2.25 kcal Atomic # 6 Polarization: 2.40 SS G_CDS: -1.61 Total: 0.79 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: -0.25 Total: -37.27 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.90 Total: -25.29 kcal Atomic # 9 Polarization: -1.62 SS G_CDS: 0.04 Total: -1.58 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -1.48 Total: -2.12 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.22 -7.96 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237804293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.292 kcal (2) G-P(sol) polarization free energy of solvation -33.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds