Wall clock time and date at job start Wed Apr 1 2020 02:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46945 * 2 1 4 4 C 1.34232 * 116.99155 * 180.02562 * 3 2 1 5 5 O 1.20822 * 120.00688 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99207 * 180.02562 * 4 3 2 7 7 N 1.46901 * 109.46938 * 179.97438 * 6 4 3 8 8 C 1.46903 * 110.99859 * 66.04090 * 7 6 4 9 9 C 1.50702 * 109.47166 * 196.18345 * 8 7 6 10 10 H 1.07993 * 119.99842 * 2.69243 * 9 8 7 11 11 C 1.37882 * 119.99899 * 182.68595 * 9 8 7 12 12 N 1.31514 * 119.99888 * 354.59075 * 11 9 8 13 13 Si 1.86793 * 119.99871 * 174.58794 * 11 9 8 14 14 H 1.48502 * 109.47220 * 65.00240 * 13 11 9 15 15 H 1.48497 * 109.47531 * 185.00315 * 13 11 9 16 16 H 1.48506 * 109.47353 * 305.00592 * 13 11 9 17 17 C 1.46891 * 111.00332 * 189.99580 * 7 6 4 18 18 C 1.50700 * 109.46892 * 73.40670 * 17 7 6 19 19 C 1.38208 * 120.00885 * 254.17078 * 18 17 7 20 20 C 1.38427 * 120.04851 * 179.71975 * 19 18 17 21 21 F 1.35104 * 119.96534 * 180.27877 * 20 19 18 22 22 C 1.38475 * 120.06655 * 0.55644 * 20 19 18 23 23 C 1.38214 * 120.02026 * 359.72400 * 22 20 19 24 24 Cl 1.73603 * 120.02487 * 180.02562 * 23 22 20 25 25 C 1.38641 * 120.00967 * 74.44653 * 18 17 7 26 26 O 1.35961 * 120.03389 * 359.97438 * 25 18 17 27 27 H 1.09000 * 109.47415 * 59.99518 * 1 2 3 28 28 H 1.08998 * 109.47726 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47324 * 299.99705 * 1 2 3 30 30 H 1.09003 * 109.46615 * 240.00070 * 2 1 3 31 31 H 1.08995 * 109.47016 * 120.00315 * 2 1 3 32 32 H 1.08997 * 109.47298 * 59.99718 * 6 4 3 33 33 H 1.09003 * 109.47033 * 299.99600 * 6 4 3 34 34 H 1.08995 * 109.47566 * 316.19026 * 8 7 6 35 35 H 1.09002 * 109.46936 * 76.18597 * 8 7 6 36 36 H 0.96998 * 119.99731 * 179.97438 * 12 11 9 37 37 H 1.09002 * 109.47834 * 193.40773 * 17 7 6 38 38 H 1.09004 * 109.47376 * 313.41164 * 17 7 6 39 39 H 1.07997 * 119.97662 * 0.02562 * 19 18 17 40 40 H 1.08001 * 119.98958 * 179.74320 * 22 20 19 41 41 H 0.96698 * 114.00121 * 90.00192 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5447 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9207 2.9374 0.0000 7 7 5.3877 2.8605 -0.0001 8 6 5.8842 2.2773 -1.2537 9 6 7.3176 1.8478 -1.0749 10 1 7.7970 1.9535 -0.1130 11 6 8.0170 1.3198 -2.1394 12 7 7.4043 1.0920 -3.2806 13 14 9.8347 0.9283 -1.9607 14 1 10.0114 -0.1574 -0.9630 15 1 10.3778 0.4894 -3.2713 16 1 10.5600 2.1416 -1.5056 17 6 5.9842 4.1814 0.2384 18 6 5.8051 4.5594 1.6862 19 6 4.8719 5.5152 2.0408 20 6 4.7026 5.8588 3.3710 21 9 3.7859 6.7893 3.7162 22 6 5.4759 5.2540 4.3476 23 6 6.4141 4.3020 3.9956 24 17 7.3831 3.5431 5.2199 25 6 6.5804 3.9525 2.6623 26 8 7.5023 3.0158 2.3142 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.5852 3.4690 0.8904 33 1 3.5844 3.4700 -0.8896 34 1 5.2760 1.4123 -1.5180 35 1 5.8240 3.0203 -2.0489 36 1 7.8964 0.7209 -4.0296 37 1 7.0474 4.1485 0.0004 38 1 5.4931 4.9214 -0.3936 39 1 4.2708 5.9908 1.2799 40 1 5.3457 5.5260 5.3846 41 1 8.3783 3.3781 2.1233 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237804293.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:32 Heat of formation + Delta-G solvation = -163.501194 kcal Electronic energy + Delta-G solvation = -28443.766360 eV Core-core repulsion = 24071.122114 eV Total energy + Delta-G solvation = -4372.644246 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.93431 -41.54172 -40.92340 -38.48692 -37.59187 -37.43456 -37.01145 -34.66182 -32.86320 -32.54107 -30.45083 -30.05105 -28.36119 -26.16424 -24.29098 -23.81775 -23.39424 -22.45679 -21.36772 -19.39907 -18.79709 -18.57078 -18.27927 -18.01397 -17.59557 -17.28057 -16.82170 -16.58163 -16.31668 -15.81715 -15.78007 -15.62188 -15.03279 -14.93946 -14.77892 -14.34168 -14.06675 -13.90522 -13.66717 -13.58095 -13.46933 -13.27122 -13.04370 -12.79077 -12.71413 -12.51192 -12.45720 -12.27638 -12.16847 -12.08446 -11.89873 -11.50969 -11.47119 -11.33044 -11.15026 -10.46551 -9.95605 -9.46032 -9.04129 -8.10375 -6.15066 -0.11538 -0.05597 0.99935 1.30838 1.43798 1.48198 1.54272 1.65360 2.24514 2.47306 3.08319 3.18854 3.23451 3.37332 3.56736 3.84162 3.88447 3.99289 4.11129 4.12628 4.15434 4.26737 4.30857 4.35666 4.58198 4.61538 4.75785 4.85017 4.92109 4.93046 4.94214 5.13061 5.15172 5.23025 5.38507 5.49990 5.60594 5.78417 6.13737 6.32970 6.53979 6.85542 6.92564 7.00576 7.51487 9.01255 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.006678 B = 0.005000 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4191.601903 B = 5599.186897 C = 8315.909312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.052 3.948 3 O -0.364 6.364 4 C 0.453 3.547 5 O -0.515 6.515 6 C 0.063 3.937 7 N -0.522 5.522 8 C 0.208 3.792 9 C -0.500 4.500 10 H 0.073 0.927 11 C -0.003 4.003 12 N -0.941 5.941 13 Si 0.963 3.037 14 H -0.280 1.280 15 H -0.291 1.291 16 H -0.256 1.256 17 C 0.112 3.888 18 C -0.070 4.070 19 C -0.122 4.122 20 C 0.097 3.903 21 F -0.133 7.133 22 C -0.129 4.129 23 C -0.051 4.051 24 Cl -0.049 7.049 25 C 0.131 3.869 26 O -0.482 6.482 27 H 0.069 0.931 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.130 0.870 33 H 0.084 0.916 34 H 0.008 0.992 35 H -0.029 1.029 36 H 0.259 0.741 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.166 0.834 40 H 0.166 0.834 41 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.064 10.423 13.429 19.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.295 3.705 5 O -0.402 6.402 6 C -0.066 4.066 7 N -0.247 5.247 8 C 0.082 3.918 9 C -0.538 4.538 10 H 0.091 0.909 11 C -0.200 4.200 12 N -0.583 5.583 13 Si 0.788 3.212 14 H -0.206 1.206 15 H -0.217 1.217 16 H -0.180 1.180 17 C -0.015 4.015 18 C -0.072 4.072 19 C -0.141 4.141 20 C 0.078 3.922 21 F -0.111 7.111 22 C -0.148 4.148 23 C -0.079 4.079 24 Cl -0.020 7.020 25 C 0.084 3.916 26 O -0.294 6.294 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.148 0.852 33 H 0.102 0.898 34 H 0.026 0.974 35 H -0.011 1.011 36 H 0.068 0.932 37 H 0.107 0.893 38 H 0.080 0.920 39 H 0.184 0.816 40 H 0.183 0.817 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -9.088 9.293 13.828 18.978 hybrid contribution 1.140 -0.066 -0.912 1.462 sum -7.948 9.226 12.916 17.751 Atomic orbital electron populations 1.21792 0.89491 1.04403 1.03921 1.23232 0.97555 0.79608 1.01799 1.86460 1.23835 1.33382 1.84421 1.24123 0.80561 0.93521 0.72287 1.90737 1.60877 1.44123 1.44415 1.21684 0.90389 0.89519 1.05014 1.61641 1.02330 1.22400 1.38305 1.19481 0.95793 0.92610 0.83904 1.21446 0.96655 1.39354 0.96350 0.90850 1.25847 1.02993 0.95969 0.95143 1.70107 1.37807 1.46531 1.03842 0.85537 0.79972 0.79019 0.76648 1.20619 1.21700 1.17984 1.20781 1.01753 0.88685 0.90297 1.20027 0.96347 0.95099 0.95734 1.21248 0.99025 0.98352 0.95497 1.17270 0.90979 0.91184 0.92784 1.91527 1.63867 1.62879 1.92835 1.20998 0.95576 0.96741 1.01506 1.21122 0.98517 0.98702 0.89535 1.98376 1.69726 1.80832 1.53074 1.18216 0.93988 0.89881 0.89486 1.85001 1.23108 1.31621 1.89634 0.91155 0.88212 0.90695 0.92741 0.91892 0.85231 0.89821 0.97410 1.01140 0.93246 0.89345 0.92031 0.81629 0.81668 0.73987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.29 71.98 0.74 -1.75 16 2 C 0.05 1.44 6.19 71.98 0.45 1.88 16 3 O -0.36 -11.82 10.22 -51.44 -0.53 -12.35 16 4 C 0.45 17.79 7.52 71.24 0.54 18.33 16 5 O -0.51 -25.42 14.23 21.98 0.31 -25.11 16 6 C 0.06 2.12 5.40 85.56 0.46 2.59 16 7 N -0.52 -21.21 4.12 -909.94 -3.75 -24.96 16 8 C 0.21 10.83 4.29 85.56 0.37 11.20 16 9 C -0.50 -27.88 8.34 25.60 0.21 -27.66 16 10 H 0.07 3.98 7.53 -2.91 -0.02 3.95 16 11 C 0.00 -0.17 5.45 84.66 0.46 0.30 16 12 N -0.94 -57.61 13.30 21.45 0.29 -57.32 16 13 Si 0.96 44.72 29.54 68.60 2.03 46.74 16 14 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 15 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 16 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 17 C 0.11 3.60 4.55 85.56 0.39 3.99 16 18 C -0.07 -1.88 4.73 -19.78 -0.09 -1.97 16 19 C -0.12 -2.56 8.96 22.31 0.20 -2.36 16 20 C 0.10 1.99 7.30 22.37 0.16 2.16 16 21 F -0.13 -2.66 17.27 44.97 0.78 -1.88 16 22 C -0.13 -2.63 9.80 22.32 0.22 -2.41 16 23 C -0.05 -1.25 6.33 22.41 0.14 -1.11 16 24 Cl -0.05 -1.16 28.50 -2.72 -0.08 -1.24 16 25 C 0.13 3.70 6.67 22.51 0.15 3.85 16 26 O -0.48 -15.46 12.07 -93.11 -1.12 -16.59 16 27 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 31 H 0.06 1.78 8.13 -2.39 -0.02 1.76 16 32 H 0.13 3.53 6.78 -2.39 -0.02 3.52 16 33 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 34 H 0.01 0.47 5.81 -2.39 -0.01 0.46 16 35 H -0.03 -1.58 8.05 -2.39 -0.02 -1.60 16 36 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 37 H 0.09 3.18 7.00 -2.39 -0.02 3.16 16 38 H 0.06 1.70 7.83 -2.39 -0.02 1.68 16 39 H 0.17 2.67 7.99 -2.91 -0.02 2.65 16 40 H 0.17 2.63 8.06 -2.91 -0.02 2.60 16 41 H 0.40 9.79 9.06 -74.06 -0.67 9.12 16 Total: -1.00 -74.20 371.64 2.73 -71.47 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 0.41 Total: 14.22 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 4.40 Total: 7.02 kcal Atomic # 7 Polarization: -78.82 SS G_CDS: -3.47 Total: -82.29 kcal Atomic # 8 Polarization: -52.71 SS G_CDS: -1.34 Total: -54.04 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -74.20 2.73 -71.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237804293.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.029 kcal (2) G-P(sol) polarization free energy of solvation -74.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds