Wall clock time and date at job start Wed Apr 1 2020 02:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45208 * 109.47063 * 2 1 4 4 C 1.34227 * 116.99952 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99812 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47106 * 174.26849 * 6 4 3 8 8 C 1.46893 * 110.99973 * 287.83675 * 7 6 4 9 9 C 1.50710 * 109.47208 * 295.44475 * 8 7 6 10 10 H 1.07994 * 119.99632 * 5.34057 * 9 8 7 11 11 C 1.37879 * 119.99938 * 185.34574 * 9 8 7 12 12 N 1.31512 * 120.00026 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99728 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47482 * 59.99686 * 13 11 9 15 15 H 1.48493 * 109.47048 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47116 * 299.99670 * 13 11 9 17 17 C 1.46902 * 111.00089 * 163.88194 * 7 6 4 18 18 C 1.50699 * 109.47400 * 189.99740 * 17 7 6 19 19 C 1.38186 * 120.00421 * 260.00344 * 18 17 7 20 20 C 1.38404 * 120.04058 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.97272 * 180.02562 * 20 19 18 22 22 C 1.38589 * 120.04733 * 0.02562 * 20 19 18 23 23 Cl 1.73605 * 119.99330 * 179.97438 * 22 20 19 24 24 C 1.38222 * 120.01154 * 0.02562 * 22 20 19 25 25 C 1.38688 * 120.00004 * 79.72672 * 18 17 7 26 26 O 1.35945 * 120.02440 * 359.97438 * 25 18 17 27 27 H 1.08996 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47292 * 300.00340 * 1 2 3 29 29 H 1.08997 * 109.46831 * 60.00298 * 1 2 3 30 30 H 1.09000 * 109.47293 * 240.00217 * 2 1 3 31 31 H 1.09001 * 109.47326 * 119.99718 * 2 1 3 32 32 H 1.08999 * 109.47354 * 54.26315 * 6 4 3 33 33 H 1.09001 * 109.47474 * 294.26620 * 6 4 3 34 34 H 1.09002 * 109.47633 * 55.44140 * 8 7 6 35 35 H 1.08995 * 109.47514 * 175.44094 * 8 7 6 36 36 H 0.97000 * 119.99481 * 180.02562 * 12 11 9 37 37 H 1.09007 * 109.46964 * 69.99732 * 17 7 6 38 38 H 1.09004 * 109.47102 * 310.00139 * 17 7 6 39 39 H 1.07999 * 119.98413 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.02601 * 179.97438 * 24 22 20 41 41 H 0.96697 * 114.00238 * 90.00136 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3812 2.8634 0.1390 8 6 5.7609 2.4682 1.5019 9 6 5.3305 3.5372 2.4732 10 1 4.7502 4.3795 2.1268 11 6 5.6777 3.4397 3.8040 12 7 6.3839 2.4136 4.2259 13 14 5.1448 4.7650 5.0078 14 1 3.6623 4.8475 5.0289 15 1 5.6417 4.4287 6.3661 16 1 5.7074 6.0727 4.5851 17 6 6.0109 4.1369 -0.2345 18 6 7.5044 3.9537 -0.3173 19 6 8.3091 4.3552 0.7320 20 6 9.6808 4.1868 0.6570 21 9 10.4661 4.5794 1.6838 22 6 10.2492 3.6158 -0.4706 23 17 11.9700 3.4058 -0.5634 24 6 9.4464 3.2143 -1.5217 25 6 8.0709 3.3768 -1.4441 26 8 7.2794 2.9759 -2.4740 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5045 3.5032 0.8336 33 1 3.6697 3.4342 -0.9373 34 1 5.2725 1.5277 1.7570 35 1 6.8422 2.3423 1.5559 36 1 6.6278 2.3449 5.1622 37 1 5.7785 4.8914 0.5171 38 1 5.6302 4.4600 -1.2035 39 1 7.8673 4.8000 1.6114 40 1 9.8892 2.7697 -2.4007 41 1 7.1275 3.6583 -3.1420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237939430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:36 Heat of formation + Delta-G solvation = -145.700563 kcal Electronic energy + Delta-G solvation = -28481.522226 eV Core-core repulsion = 24109.649874 eV Total energy + Delta-G solvation = -4371.872352 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.61244 -40.00351 -39.64827 -37.04704 -36.83432 -35.96868 -35.50164 -32.60490 -31.71324 -31.24959 -29.34379 -27.94853 -26.84229 -24.56134 -23.12433 -22.75972 -22.12588 -20.78949 -19.72076 -18.28686 -17.46380 -16.90041 -16.81024 -16.50674 -16.24039 -15.69515 -15.50103 -15.22315 -14.88147 -14.55843 -14.17313 -14.10880 -13.72399 -13.61301 -13.21925 -13.03137 -12.78157 -12.58648 -12.46420 -12.39144 -11.97141 -11.76598 -11.39227 -11.27979 -11.15766 -11.10375 -11.00363 -10.86148 -10.76704 -10.50020 -10.41869 -10.17488 -10.03869 -9.78924 -9.65251 -8.70348 -8.49298 -8.20652 -7.34989 -6.09719 -4.21685 1.10430 1.27007 2.09053 2.89251 3.05518 3.21675 3.28779 3.29678 3.53531 4.29343 4.32061 4.34544 4.81244 4.99461 5.05241 5.08189 5.14349 5.20070 5.28280 5.39806 5.42391 5.60317 5.68646 5.83969 5.86748 5.88049 5.98035 6.02406 6.07640 6.08597 6.19697 6.29771 6.67275 6.86131 6.90280 7.07945 7.46745 7.79631 7.80262 7.85787 8.05771 8.15948 8.46877 8.88472 9.45396 10.94868 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009622 B = 0.004057 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.309808 B = 6899.190558 C = 9071.511821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.485 6.485 6 C 0.070 3.930 7 N -0.516 5.516 8 C 0.183 3.817 9 C -0.563 4.563 10 H 0.058 0.942 11 C 0.071 3.929 12 N -0.880 5.880 13 Si 0.884 3.116 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.106 3.894 18 C -0.052 4.052 19 C -0.096 4.096 20 C 0.097 3.903 21 F -0.129 7.129 22 C -0.063 4.063 23 Cl -0.061 7.061 24 C -0.122 4.122 25 C 0.127 3.873 26 O -0.475 6.475 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.158 0.842 40 H 0.143 0.857 41 H 0.382 0.618 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.603 3.542 -12.787 13.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.306 3.694 5 O -0.369 6.369 6 C -0.059 4.059 7 N -0.240 5.240 8 C 0.058 3.942 9 C -0.602 4.602 10 H 0.076 0.924 11 C -0.133 4.133 12 N -0.517 5.517 13 Si 0.711 3.289 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.201 1.201 17 C -0.022 4.022 18 C -0.053 4.053 19 C -0.115 4.115 20 C 0.077 3.923 21 F -0.107 7.107 22 C -0.091 4.091 23 Cl -0.032 7.032 24 C -0.142 4.142 25 C 0.081 3.919 26 O -0.283 6.283 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.081 0.919 38 H 0.087 0.913 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.975 2.201 -12.604 12.832 hybrid contribution -0.150 1.409 1.437 2.018 sum -1.125 3.611 -11.167 11.790 Atomic orbital electron populations 1.21780 0.93194 1.02479 1.03261 1.22877 0.94799 0.81138 1.02349 1.86475 1.25611 1.31586 1.85031 1.23762 0.79763 0.93271 0.72571 1.90646 1.59982 1.42870 1.43425 1.21389 0.91278 0.89906 1.03339 1.62219 1.03816 1.27421 1.30574 1.19899 0.97844 0.96025 0.80423 1.21641 1.35912 1.08661 0.93983 0.92440 1.24924 0.94692 0.95436 0.98239 1.69942 1.36678 1.28951 1.16109 0.86789 0.79108 0.82269 0.80693 1.20192 1.21150 1.20105 1.20741 0.88485 0.92740 1.00192 1.20054 0.96809 0.95637 0.92789 1.21197 0.90018 1.00322 0.99969 1.17375 0.88858 1.01246 0.84825 1.91521 1.73891 1.88570 1.56753 1.20661 0.85650 1.06449 0.96337 1.98358 1.10453 1.96105 1.98300 1.21048 0.92518 1.01900 0.98688 1.18024 0.87637 0.96632 0.89580 1.84991 1.68899 1.40549 1.33893 0.90694 0.91563 0.91764 0.91692 0.91439 0.89532 0.88671 0.94581 0.94108 0.92559 0.91872 0.91292 0.82435 0.83956 0.76262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.29 37.16 0.38 -1.13 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.18 10.22 -39.25 -0.40 -6.59 16 4 C 0.47 9.00 7.54 36.00 0.27 9.27 16 5 O -0.48 -11.04 14.91 -18.75 -0.28 -11.32 16 6 C 0.07 1.25 5.42 -4.98 -0.03 1.22 16 7 N -0.52 -10.37 4.29 -238.96 -1.03 -11.39 16 8 C 0.18 4.56 4.53 -4.97 -0.02 4.53 16 9 C -0.56 -14.16 7.33 -34.43 -0.25 -14.41 16 10 H 0.06 1.37 5.97 -52.49 -0.31 1.06 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 12 N -0.88 -25.20 13.29 55.43 0.74 -24.47 16 13 Si 0.88 20.34 29.54 -169.99 -5.02 15.32 16 14 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 15 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 C 0.11 1.77 4.53 -4.97 -0.02 1.74 16 18 C -0.05 -0.86 4.59 -104.47 -0.48 -1.34 16 19 C -0.10 -1.71 8.72 -39.54 -0.34 -2.06 16 20 C 0.10 1.69 7.27 -39.39 -0.29 1.40 16 21 F -0.13 -2.34 16.83 2.25 0.04 -2.31 16 22 C -0.06 -0.98 6.32 -39.46 -0.25 -1.23 16 23 Cl -0.06 -0.86 28.61 -51.86 -1.48 -2.34 16 24 C -0.12 -1.74 9.77 -39.41 -0.38 -2.12 16 25 C 0.13 1.91 6.68 -39.24 -0.26 1.65 16 26 O -0.47 -6.34 12.74 -19.57 -0.25 -6.59 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 31 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 32 H 0.09 1.60 6.40 -51.93 -0.33 1.27 16 33 H 0.10 1.33 7.81 -51.93 -0.41 0.93 16 34 H 0.04 1.03 6.59 -51.93 -0.34 0.69 16 35 H 0.04 1.12 6.68 -51.93 -0.35 0.77 16 36 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 37 H 0.06 1.11 6.22 -51.93 -0.32 0.78 16 38 H 0.07 0.92 7.58 -51.93 -0.39 0.52 16 39 H 0.16 3.03 8.04 -52.49 -0.42 2.61 16 40 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.38 2.90 9.06 45.56 0.41 3.32 16 LS Contribution 367.78 15.07 5.54 5.54 Total: -1.00 -32.06 367.78 -7.82 -39.88 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.14 Total: 3.83 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.54 Total: 0.43 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: -0.29 Total: -35.86 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.93 Total: -24.49 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.48 Total: -2.34 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.06 -7.82 -39.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237939430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.818 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds