Wall clock time and date at job start Wed Apr 1 2020 02:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45208 * 109.47063 * 2 1 4 4 C 1.34227 * 116.99952 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99986 * 0.02562 * 4 3 2 6 6 C 1.50697 * 119.99812 * 179.97438 * 4 3 2 7 7 N 1.46900 * 109.47106 * 174.26849 * 6 4 3 8 8 C 1.46893 * 110.99973 * 287.83675 * 7 6 4 9 9 C 1.50710 * 109.47208 * 295.44475 * 8 7 6 10 10 H 1.07994 * 119.99632 * 5.34057 * 9 8 7 11 11 C 1.37879 * 119.99938 * 185.34574 * 9 8 7 12 12 N 1.31512 * 120.00026 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99728 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47482 * 59.99686 * 13 11 9 15 15 H 1.48493 * 109.47048 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47116 * 299.99670 * 13 11 9 17 17 C 1.46902 * 111.00089 * 163.88194 * 7 6 4 18 18 C 1.50699 * 109.47400 * 189.99740 * 17 7 6 19 19 C 1.38186 * 120.00421 * 260.00344 * 18 17 7 20 20 C 1.38404 * 120.04058 * 179.97438 * 19 18 17 21 21 F 1.35099 * 119.97272 * 180.02562 * 20 19 18 22 22 C 1.38589 * 120.04733 * 0.02562 * 20 19 18 23 23 Cl 1.73605 * 119.99330 * 179.97438 * 22 20 19 24 24 C 1.38222 * 120.01154 * 0.02562 * 22 20 19 25 25 C 1.38688 * 120.00004 * 79.72672 * 18 17 7 26 26 O 1.35945 * 120.02440 * 359.97438 * 25 18 17 27 27 H 1.08996 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47292 * 300.00340 * 1 2 3 29 29 H 1.08997 * 109.46831 * 60.00298 * 1 2 3 30 30 H 1.09000 * 109.47293 * 240.00217 * 2 1 3 31 31 H 1.09001 * 109.47326 * 119.99718 * 2 1 3 32 32 H 1.08999 * 109.47354 * 54.26315 * 6 4 3 33 33 H 1.09001 * 109.47474 * 294.26620 * 6 4 3 34 34 H 1.09002 * 109.47633 * 55.44140 * 8 7 6 35 35 H 1.08995 * 109.47514 * 175.44094 * 8 7 6 36 36 H 0.97000 * 119.99481 * 180.02562 * 12 11 9 37 37 H 1.09007 * 109.46964 * 69.99732 * 17 7 6 38 38 H 1.09004 * 109.47102 * 310.00139 * 17 7 6 39 39 H 1.07999 * 119.98413 * 0.02562 * 19 18 17 40 40 H 1.07998 * 120.02601 * 179.97438 * 24 22 20 41 41 H 0.96697 * 114.00238 * 90.00136 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3812 2.8634 0.1390 8 6 5.7609 2.4682 1.5019 9 6 5.3305 3.5372 2.4732 10 1 4.7502 4.3795 2.1268 11 6 5.6777 3.4397 3.8040 12 7 6.3839 2.4136 4.2259 13 14 5.1448 4.7650 5.0078 14 1 3.6623 4.8475 5.0289 15 1 5.6417 4.4287 6.3661 16 1 5.7074 6.0727 4.5851 17 6 6.0109 4.1369 -0.2345 18 6 7.5044 3.9537 -0.3173 19 6 8.3091 4.3552 0.7320 20 6 9.6808 4.1868 0.6570 21 9 10.4661 4.5794 1.6838 22 6 10.2492 3.6158 -0.4706 23 17 11.9700 3.4058 -0.5634 24 6 9.4464 3.2143 -1.5217 25 6 8.0709 3.3768 -1.4441 26 8 7.2794 2.9759 -2.4740 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.5045 3.5032 0.8336 33 1 3.6697 3.4342 -0.9373 34 1 5.2725 1.5277 1.7570 35 1 6.8422 2.3423 1.5559 36 1 6.6278 2.3449 5.1622 37 1 5.7785 4.8914 0.5171 38 1 5.6302 4.4600 -1.2035 39 1 7.8673 4.8000 1.6114 40 1 9.8892 2.7697 -2.4007 41 1 7.1275 3.6583 -3.1420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237939430.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:35 Heat of formation + Delta-G solvation = -167.256596 kcal Electronic energy + Delta-G solvation = -28482.456966 eV Core-core repulsion = 24109.649874 eV Total energy + Delta-G solvation = -4372.807092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.98535 -41.43520 -40.91673 -38.50905 -37.99881 -37.28904 -36.88879 -34.58708 -32.89296 -32.43375 -30.60157 -29.68698 -28.33609 -26.21827 -24.47199 -23.99825 -23.45966 -22.15726 -21.29155 -19.43210 -19.03404 -18.37224 -18.18985 -18.04894 -17.63594 -17.08176 -16.94067 -16.57431 -16.48145 -16.03850 -15.71038 -15.35381 -14.98062 -14.95116 -14.71725 -14.37516 -14.12834 -13.93026 -13.75439 -13.55714 -13.28677 -13.03270 -12.95762 -12.81533 -12.56759 -12.51548 -12.44129 -12.35514 -12.18717 -12.05262 -11.98368 -11.68526 -11.47457 -11.44190 -11.23275 -10.57150 -9.95649 -9.45390 -9.01604 -8.11735 -6.32309 -0.14918 0.03126 0.88441 1.39304 1.39598 1.39815 1.47276 1.74684 2.29178 2.38047 3.05250 3.14159 3.23835 3.43347 3.68318 3.80899 3.95142 4.03223 4.14874 4.16491 4.36109 4.38645 4.44522 4.58052 4.67515 4.78412 4.82497 4.84703 4.89743 4.95998 5.00735 5.17792 5.24962 5.37899 5.40048 5.56500 5.61238 5.79722 5.96789 6.19480 6.38900 6.88597 6.95704 6.99568 7.39686 8.90516 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.009622 B = 0.004057 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.309808 B = 6899.190558 C = 9071.511821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.463 3.537 5 O -0.528 6.528 6 C 0.069 3.931 7 N -0.523 5.523 8 C 0.207 3.793 9 C -0.552 4.552 10 H 0.074 0.926 11 C 0.016 3.984 12 N -0.925 5.925 13 Si 0.948 3.052 14 H -0.267 1.267 15 H -0.293 1.293 16 H -0.262 1.262 17 C 0.107 3.893 18 C -0.068 4.068 19 C -0.109 4.109 20 C 0.073 3.927 21 F -0.141 7.141 22 C -0.062 4.062 23 Cl -0.047 7.047 24 C -0.114 4.114 25 C 0.142 3.858 26 O -0.481 6.481 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.145 0.855 34 H -0.010 1.010 35 H 0.007 0.993 36 H 0.261 0.739 37 H 0.053 0.947 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.172 0.828 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.036 4.788 -15.133 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.307 3.693 5 O -0.416 6.416 6 C -0.060 4.060 7 N -0.247 5.247 8 C 0.081 3.919 9 C -0.591 4.591 10 H 0.092 0.908 11 C -0.184 4.184 12 N -0.565 5.565 13 Si 0.773 3.227 14 H -0.192 1.192 15 H -0.219 1.219 16 H -0.187 1.187 17 C -0.020 4.020 18 C -0.069 4.069 19 C -0.129 4.129 20 C 0.053 3.947 21 F -0.119 7.119 22 C -0.090 4.090 23 Cl -0.018 7.018 24 C -0.133 4.133 25 C 0.096 3.904 26 O -0.294 6.294 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.162 0.838 34 H 0.008 0.992 35 H 0.025 0.975 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.189 0.811 41 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -2.448 3.495 -14.995 15.591 hybrid contribution 0.261 0.956 2.029 2.259 sum -2.187 4.451 -12.966 13.882 Atomic orbital electron populations 1.21794 0.89815 1.04331 1.03805 1.23214 0.97397 0.79717 1.01798 1.86473 1.24141 1.33296 1.84328 1.24168 0.80312 0.93485 0.71375 1.90631 1.61111 1.44271 1.45619 1.21566 0.89521 0.89296 1.05576 1.62037 1.05664 1.29787 1.27222 1.19341 0.95081 0.94121 0.83396 1.21931 1.34644 1.08623 0.93897 0.90816 1.25766 0.94868 0.97374 1.00370 1.70108 1.38797 1.31371 1.16186 0.85759 0.79017 0.79986 0.77921 1.19169 1.21940 1.18711 1.20872 0.88428 0.90626 1.02060 1.20140 0.96839 0.96643 0.93273 1.21053 0.90614 1.01401 0.99819 1.17545 0.88805 1.02797 0.85512 1.91478 1.74096 1.88918 1.57455 1.20755 0.86611 1.05740 0.95909 1.98361 1.09278 1.95967 1.98226 1.21326 0.92140 1.00871 0.98987 1.17985 0.88044 0.94910 0.89456 1.84925 1.68412 1.42009 1.34047 0.88196 0.91710 0.90455 0.91234 0.93176 0.90022 0.83752 0.99216 0.97520 0.92996 0.92853 0.86786 0.84874 0.81063 0.72877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.37 -11.89 10.22 -51.39 -0.53 -12.41 16 4 C 0.46 17.77 7.54 71.24 0.54 18.31 16 5 O -0.53 -24.60 14.91 21.98 0.33 -24.27 16 6 C 0.07 2.34 5.42 85.56 0.46 2.80 16 7 N -0.52 -20.71 4.29 -909.93 -3.91 -24.61 16 8 C 0.21 10.66 4.53 85.56 0.39 11.05 16 9 C -0.55 -28.20 7.33 25.60 0.19 -28.01 16 10 H 0.07 3.46 5.97 -2.91 -0.02 3.44 16 11 C 0.02 0.88 5.46 84.66 0.46 1.34 16 12 N -0.93 -55.32 13.29 21.45 0.28 -55.03 16 13 Si 0.95 42.23 29.54 68.60 2.03 44.25 16 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 17 C 0.11 3.38 4.53 85.56 0.39 3.77 16 18 C -0.07 -2.22 4.59 -19.77 -0.09 -2.31 16 19 C -0.11 -4.03 8.72 22.30 0.19 -3.83 16 20 C 0.07 2.61 7.27 22.39 0.16 2.77 16 21 F -0.14 -5.32 16.83 44.97 0.76 -4.57 16 22 C -0.06 -1.89 6.32 22.35 0.14 -1.75 16 23 Cl -0.05 -1.28 28.61 -2.72 -0.08 -1.36 16 24 C -0.11 -3.01 9.77 22.38 0.22 -2.79 16 25 C 0.14 3.98 6.68 22.49 0.15 4.13 16 26 O -0.48 -11.15 12.74 -92.92 -1.18 -12.34 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.81 8.13 -2.39 -0.02 1.80 16 31 H 0.05 1.52 8.13 -2.39 -0.02 1.50 16 32 H 0.08 2.89 6.40 -2.39 -0.02 2.88 16 33 H 0.14 3.44 7.81 -2.39 -0.02 3.42 16 34 H -0.01 -0.62 6.59 -2.39 -0.02 -0.64 16 35 H 0.01 0.38 6.68 -2.39 -0.02 0.37 16 36 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 37 H 0.05 1.80 6.22 -2.38 -0.01 1.79 16 38 H 0.11 2.56 7.58 -2.38 -0.02 2.54 16 39 H 0.13 5.46 8.04 -2.91 -0.02 5.43 16 40 H 0.17 3.48 8.06 -2.91 -0.02 3.46 16 41 H 0.41 4.36 9.06 -74.06 -0.67 3.68 16 Total: -1.00 -73.41 367.78 2.51 -70.90 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.42 Total: 13.88 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 4.39 Total: 5.56 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.62 Total: -79.64 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -1.38 Total: -49.02 kcal Atomic # 9 Polarization: -5.32 SS G_CDS: 0.76 Total: -4.57 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -1.28 SS G_CDS: -0.08 Total: -1.36 kcal Total: -73.41 2.51 -70.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237939430.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.356 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds