Wall clock time and date at job start Wed Apr 1 2020 02:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47163 * 2 1 4 4 C 1.34227 * 117.00196 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99849 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00203 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.47119 * 174.26581 * 6 4 3 8 8 C 1.46899 * 110.99837 * 287.81536 * 7 6 4 9 9 C 1.50699 * 109.47121 * 295.10620 * 8 7 6 10 10 H 1.07999 * 120.00404 * 5.32291 * 9 8 7 11 11 C 1.37883 * 119.99897 * 185.32330 * 9 8 7 12 12 N 1.31512 * 120.00155 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99803 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47000 * 90.00173 * 13 11 9 15 15 H 1.48496 * 109.47037 * 210.00101 * 13 11 9 16 16 H 1.48495 * 109.47100 * 330.00070 * 13 11 9 17 17 C 1.46906 * 110.99780 * 163.86397 * 7 6 4 18 18 C 1.50702 * 109.47034 * 189.99833 * 17 7 6 19 19 C 1.38285 * 119.93569 * 89.99604 * 18 17 7 20 20 C 1.38314 * 120.05410 * 180.02562 * 19 18 17 21 21 F 1.35100 * 120.04334 * 180.02562 * 20 19 18 22 22 C 1.38902 * 119.91865 * 0.02562 * 20 19 18 23 23 O 1.35982 * 120.07039 * 179.97438 * 22 20 19 24 24 C 1.38723 * 119.86606 * 0.28312 * 22 20 19 25 25 Cl 1.73602 * 120.02521 * 179.72273 * 24 22 20 26 26 C 1.38226 * 119.93325 * 270.02535 * 18 17 7 27 27 H 1.08999 * 109.47566 * 300.00245 * 1 2 3 28 28 H 1.09000 * 109.47144 * 60.00233 * 1 2 3 29 29 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46996 * 240.00226 * 2 1 3 31 31 H 1.09003 * 109.46843 * 120.00190 * 2 1 3 32 32 H 1.08991 * 109.47456 * 54.26379 * 6 4 3 33 33 H 1.09005 * 109.47337 * 294.26400 * 6 4 3 34 34 H 1.08997 * 109.47236 * 55.10665 * 8 7 6 35 35 H 1.09006 * 109.46871 * 175.10638 * 8 7 6 36 36 H 0.97001 * 119.99951 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.47053 * 70.00293 * 17 7 6 38 38 H 1.08998 * 109.47206 * 309.99429 * 17 7 6 39 39 H 1.07999 * 119.97103 * 0.03070 * 19 18 17 40 40 H 0.96705 * 113.99546 * 90.00521 * 23 22 20 41 41 H 1.08000 * 119.95807 * 359.97384 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3812 2.8631 0.1400 8 6 5.7609 2.4672 1.5028 9 6 5.3381 3.5395 2.4736 10 1 4.7622 4.3849 2.1273 11 6 5.6866 3.4412 3.8040 12 7 5.3172 4.3766 4.6514 13 14 6.6834 1.9792 4.4029 14 1 8.1314 2.2932 4.3033 15 1 6.3359 1.6891 5.8172 16 1 6.3753 0.7931 3.5642 17 6 6.0109 4.1369 -0.2329 18 6 7.5044 3.9535 -0.3159 19 6 8.0884 3.5797 -1.5124 20 6 9.4589 3.4103 -1.5912 21 9 10.0292 3.0456 -2.7603 22 6 10.2481 3.6155 -0.4667 23 8 11.5957 3.4493 -0.5406 24 6 9.6581 3.9842 0.7334 25 17 10.6398 4.2348 2.1431 26 6 8.2879 4.1588 0.8043 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.5047 3.5023 0.8353 33 1 3.6696 3.4349 -0.9357 34 1 5.2678 1.5297 1.7595 35 1 6.8417 2.3354 1.5549 36 1 5.5627 4.3076 5.5873 37 1 5.7787 4.8909 0.5192 38 1 5.6303 4.4605 -1.2016 39 1 7.4738 3.4201 -2.3860 40 1 12.0783 4.2517 -0.7823 41 1 7.8289 4.4506 1.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237992995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:27 Heat of formation + Delta-G solvation = -144.530926 kcal Electronic energy + Delta-G solvation = -28345.011023 eV Core-core repulsion = 23973.189390 eV Total energy + Delta-G solvation = -4371.821633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.83281 -40.09043 -39.62861 -37.72631 -36.54527 -36.28432 -35.53252 -32.57507 -31.70072 -30.69113 -30.32878 -28.48590 -26.96669 -24.47102 -23.11535 -22.86594 -22.10149 -20.89533 -19.70069 -18.62112 -17.65690 -17.04995 -16.84974 -16.73582 -16.33977 -15.99366 -15.72361 -15.12445 -14.86135 -14.83359 -14.44214 -14.21586 -13.93862 -13.71266 -13.48630 -13.00853 -12.68685 -12.66490 -12.51959 -12.35263 -12.03066 -11.84979 -11.50284 -11.46774 -11.34140 -11.24281 -11.02478 -10.95207 -10.79936 -10.55694 -10.49410 -10.27161 -10.04278 -9.83882 -9.67588 -8.70986 -8.58578 -8.48068 -7.48852 -6.24279 -4.26033 1.01626 1.15412 2.19065 2.74609 2.93857 3.24013 3.32543 3.40324 3.47082 3.90672 4.31776 4.37094 4.70363 4.94796 4.98757 5.01975 5.06151 5.10897 5.18077 5.33921 5.38803 5.43365 5.54774 5.65650 5.76514 5.80662 5.85635 5.97432 6.02984 6.11075 6.16962 6.31632 6.62367 6.67922 6.80156 6.83033 7.04467 7.33826 7.47623 7.70389 7.76019 8.25445 8.31656 8.73818 9.38960 10.87062 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.004137 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.696697 B = 6766.464153 C = 8689.303540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.466 3.534 5 O -0.492 6.492 6 C 0.066 3.934 7 N -0.517 5.517 8 C 0.148 3.852 9 C -0.562 4.562 10 H 0.079 0.921 11 C 0.084 3.916 12 N -0.890 5.890 13 Si 0.859 3.141 14 H -0.267 1.267 15 H -0.286 1.286 16 H -0.262 1.262 17 C 0.096 3.904 18 C -0.027 4.027 19 C -0.119 4.119 20 C 0.077 3.923 21 F -0.133 7.133 22 C 0.071 3.929 23 O -0.478 6.478 24 C -0.041 4.041 25 Cl -0.051 7.051 26 C -0.082 4.082 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.096 0.904 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.033 0.967 36 H 0.266 0.734 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.144 0.856 40 H 0.388 0.612 41 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.662 0.325 -11.571 11.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.283 6.283 4 C 0.308 3.692 5 O -0.377 6.377 6 C -0.063 4.063 7 N -0.241 5.241 8 C 0.021 3.979 9 C -0.601 4.601 10 H 0.097 0.903 11 C -0.120 4.120 12 N -0.527 5.527 13 Si 0.685 3.315 14 H -0.192 1.192 15 H -0.211 1.211 16 H -0.187 1.187 17 C -0.032 4.032 18 C -0.028 4.028 19 C -0.139 4.139 20 C 0.056 3.944 21 F -0.111 7.111 22 C 0.024 3.976 23 O -0.287 6.287 24 C -0.068 4.068 25 Cl -0.022 7.022 26 C -0.101 4.101 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.118 0.882 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.161 0.839 40 H 0.244 0.756 41 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.023 -0.892 -11.463 11.543 hybrid contribution 0.671 -0.012 0.970 1.180 sum 1.694 -0.904 -10.493 10.667 Atomic orbital electron populations 1.21785 0.93049 1.02542 1.03410 1.22898 0.94961 0.80992 1.02312 1.86487 1.25367 1.31678 1.84790 1.23776 0.79896 0.93188 0.72334 1.90633 1.60101 1.42970 1.43983 1.21452 0.90610 0.90045 1.04153 1.62156 1.04589 1.28128 1.29217 1.20361 0.97066 0.96954 0.83492 1.21589 1.36901 1.08455 0.93126 0.90327 1.24827 0.95054 0.95453 0.96675 1.69897 1.45470 1.33403 1.03918 0.87063 0.81561 0.84352 0.78476 1.19246 1.21137 1.18650 1.20965 0.88371 0.92660 1.01158 1.19565 0.96269 0.95764 0.91175 1.21057 0.91903 1.00926 0.99973 1.17727 0.91466 1.04131 0.81028 1.91484 1.85212 1.89300 1.45136 1.17996 0.84248 1.04518 0.90836 1.84913 1.13831 1.38212 1.91794 1.21112 0.92690 1.04710 0.88283 1.98375 1.70231 1.94955 1.38610 1.21470 0.90224 0.97487 1.00888 0.91437 0.91691 0.90650 0.91658 0.91454 0.88605 0.88164 0.94526 0.94895 0.92455 0.90606 0.90708 0.83862 0.75645 0.82037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 10.29 37.16 0.38 -1.07 16 2 C 0.06 0.82 6.19 37.16 0.23 1.05 16 3 O -0.37 -5.83 10.22 -39.25 -0.40 -6.23 16 4 C 0.47 8.47 7.54 36.00 0.27 8.74 16 5 O -0.49 -10.38 14.91 -18.75 -0.28 -10.66 16 6 C 0.07 1.12 5.43 -4.98 -0.03 1.09 16 7 N -0.52 -9.70 4.29 -238.96 -1.03 -10.73 16 8 C 0.15 3.35 3.44 -4.98 -0.02 3.33 16 9 C -0.56 -13.94 7.23 -34.44 -0.25 -14.19 16 10 H 0.08 2.03 6.21 -52.49 -0.33 1.71 16 11 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 12 N -0.89 -25.14 13.96 55.43 0.77 -24.37 16 13 Si 0.86 20.96 27.37 -169.99 -4.65 16.31 16 14 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.26 -6.47 6.70 56.52 0.38 -6.09 16 17 C 0.10 1.52 4.89 -4.97 -0.02 1.50 16 18 C -0.03 -0.43 4.88 -104.61 -0.51 -0.94 16 19 C -0.12 -1.72 9.67 -39.54 -0.38 -2.10 16 20 C 0.08 1.14 7.31 -39.31 -0.29 0.85 16 21 F -0.13 -1.96 17.11 2.25 0.04 -1.92 16 22 C 0.07 1.08 6.70 -39.16 -0.26 0.82 16 23 O -0.48 -6.47 12.83 -19.68 -0.25 -6.72 16 24 C -0.04 -0.67 6.33 -39.37 -0.25 -0.92 16 25 Cl -0.05 -0.82 28.50 -51.86 -1.48 -2.30 16 26 C -0.08 -1.42 7.76 -39.56 -0.31 -1.72 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.81 8.13 -51.93 -0.42 0.39 16 31 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.10 1.74 6.43 -51.93 -0.33 1.40 16 33 H 0.10 1.30 7.81 -51.93 -0.41 0.90 16 34 H 0.04 0.93 6.01 -51.93 -0.31 0.61 16 35 H 0.03 0.78 5.36 -51.93 -0.28 0.50 16 36 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.08 1.32 6.28 -51.93 -0.33 0.99 16 38 H 0.07 0.94 7.80 -51.93 -0.41 0.53 16 39 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 40 H 0.39 3.31 9.06 45.56 0.41 3.72 16 41 H 0.16 3.17 7.37 -52.49 -0.39 2.78 16 LS Contribution 362.63 15.07 5.46 5.46 Total: -1.00 -31.07 362.63 -7.40 -38.47 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -4.05 Total: 4.09 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.53 Total: -1.41 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: -0.25 Total: -35.10 kcal Atomic # 8 Polarization: -22.68 SS G_CDS: -0.93 Total: -23.61 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.65 Total: 16.31 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -1.48 Total: -2.30 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.07 -7.40 -38.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237992995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.064 kcal (2) G-P(sol) polarization free energy of solvation -31.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds