Wall clock time and date at job start Wed Apr 1 2020 02:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47163 * 2 1 4 4 C 1.34227 * 117.00196 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99849 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00203 * 180.02562 * 4 3 2 7 7 N 1.46902 * 109.47119 * 174.26581 * 6 4 3 8 8 C 1.46899 * 110.99837 * 287.81536 * 7 6 4 9 9 C 1.50699 * 109.47121 * 295.10620 * 8 7 6 10 10 H 1.07999 * 120.00404 * 5.32291 * 9 8 7 11 11 C 1.37883 * 119.99897 * 185.32330 * 9 8 7 12 12 N 1.31512 * 120.00155 * 180.02562 * 11 9 8 13 13 Si 1.86808 * 119.99803 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47000 * 90.00173 * 13 11 9 15 15 H 1.48496 * 109.47037 * 210.00101 * 13 11 9 16 16 H 1.48495 * 109.47100 * 330.00070 * 13 11 9 17 17 C 1.46906 * 110.99780 * 163.86397 * 7 6 4 18 18 C 1.50702 * 109.47034 * 189.99833 * 17 7 6 19 19 C 1.38285 * 119.93569 * 89.99604 * 18 17 7 20 20 C 1.38314 * 120.05410 * 180.02562 * 19 18 17 21 21 F 1.35100 * 120.04334 * 180.02562 * 20 19 18 22 22 C 1.38902 * 119.91865 * 0.02562 * 20 19 18 23 23 O 1.35982 * 120.07039 * 179.97438 * 22 20 19 24 24 C 1.38723 * 119.86606 * 0.28312 * 22 20 19 25 25 Cl 1.73602 * 120.02521 * 179.72273 * 24 22 20 26 26 C 1.38226 * 119.93325 * 270.02535 * 18 17 7 27 27 H 1.08999 * 109.47566 * 300.00245 * 1 2 3 28 28 H 1.09000 * 109.47144 * 60.00233 * 1 2 3 29 29 H 1.08999 * 109.47477 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46996 * 240.00226 * 2 1 3 31 31 H 1.09003 * 109.46843 * 120.00190 * 2 1 3 32 32 H 1.08991 * 109.47456 * 54.26379 * 6 4 3 33 33 H 1.09005 * 109.47337 * 294.26400 * 6 4 3 34 34 H 1.08997 * 109.47236 * 55.10665 * 8 7 6 35 35 H 1.09006 * 109.46871 * 175.10638 * 8 7 6 36 36 H 0.97001 * 119.99951 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.47053 * 70.00293 * 17 7 6 38 38 H 1.08998 * 109.47206 * 309.99429 * 17 7 6 39 39 H 1.07999 * 119.97103 * 0.03070 * 19 18 17 40 40 H 0.96705 * 113.99546 * 90.00521 * 23 22 20 41 41 H 1.08000 * 119.95807 * 359.97384 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3812 2.8631 0.1400 8 6 5.7609 2.4672 1.5028 9 6 5.3381 3.5395 2.4736 10 1 4.7622 4.3849 2.1273 11 6 5.6866 3.4412 3.8040 12 7 5.3172 4.3766 4.6514 13 14 6.6834 1.9792 4.4029 14 1 8.1314 2.2932 4.3033 15 1 6.3359 1.6891 5.8172 16 1 6.3753 0.7931 3.5642 17 6 6.0109 4.1369 -0.2329 18 6 7.5044 3.9535 -0.3159 19 6 8.0884 3.5797 -1.5124 20 6 9.4589 3.4103 -1.5912 21 9 10.0292 3.0456 -2.7603 22 6 10.2481 3.6155 -0.4667 23 8 11.5957 3.4493 -0.5406 24 6 9.6581 3.9842 0.7334 25 17 10.6398 4.2348 2.1431 26 6 8.2879 4.1588 0.8043 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8932 -0.5139 0.8900 32 1 3.5047 3.5023 0.8353 33 1 3.6696 3.4349 -0.9357 34 1 5.2678 1.5297 1.7595 35 1 6.8417 2.3354 1.5549 36 1 5.5627 4.3076 5.5873 37 1 5.7787 4.8909 0.5192 38 1 5.6303 4.4605 -1.2016 39 1 7.4738 3.4201 -2.3860 40 1 12.0783 4.2517 -0.7823 41 1 7.8289 4.4506 1.7373 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237992995.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:26 Heat of formation + Delta-G solvation = -165.228380 kcal Electronic energy + Delta-G solvation = -28345.908532 eV Core-core repulsion = 23973.189390 eV Total energy + Delta-G solvation = -4372.719142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 345.098 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.99033 -41.45990 -40.85091 -39.03413 -37.78757 -37.55783 -36.94872 -34.56971 -32.71375 -31.94672 -31.54818 -30.21328 -28.33407 -25.98484 -24.38314 -24.04640 -23.41269 -22.20288 -21.23204 -19.75471 -19.34549 -18.55835 -18.08531 -18.02821 -17.64703 -17.15941 -17.11938 -16.38952 -16.33238 -16.14759 -16.05392 -15.68523 -15.12635 -15.01350 -14.76879 -14.47803 -14.19005 -13.88937 -13.60164 -13.57795 -13.47547 -13.16682 -13.08485 -12.76892 -12.68192 -12.61286 -12.44749 -12.32015 -12.24226 -12.07729 -11.86933 -11.75250 -11.67597 -11.44939 -11.28283 -10.78278 -9.81087 -9.71155 -9.04775 -8.33372 -6.34119 -0.17452 -0.07493 0.94230 1.26191 1.32083 1.34323 1.40566 1.71016 2.25499 2.29180 2.77680 3.03717 3.22499 3.34870 3.66666 3.86160 3.91158 4.03370 4.14805 4.17082 4.23002 4.33667 4.38034 4.46421 4.65410 4.70361 4.83519 4.86502 4.92193 4.95747 4.97725 5.02099 5.13244 5.18496 5.35765 5.48063 5.54640 5.60849 5.99847 6.20436 6.24410 6.56123 6.71115 6.93992 7.32804 8.80694 Molecular weight = 345.10amu Principal moments of inertia in cm(-1) A = 0.010274 B = 0.004137 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2724.696697 B = 6766.464153 C = 8689.303540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.053 3.947 3 O -0.365 6.365 4 C 0.466 3.534 5 O -0.527 6.527 6 C 0.066 3.934 7 N -0.519 5.519 8 C 0.163 3.837 9 C -0.537 4.537 10 H 0.066 0.934 11 C 0.042 3.958 12 N -0.928 5.928 13 Si 0.900 3.100 14 H -0.262 1.262 15 H -0.285 1.285 16 H -0.268 1.268 17 C 0.098 3.902 18 C -0.036 4.036 19 C -0.103 4.103 20 C 0.075 3.925 21 F -0.129 7.129 22 C 0.081 3.919 23 O -0.485 6.485 24 C -0.053 4.053 25 Cl -0.056 7.056 26 C -0.095 4.095 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.148 0.852 34 H 0.010 0.990 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.057 0.943 38 H 0.120 0.880 39 H 0.172 0.828 40 H 0.411 0.589 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.402 0.007 -14.039 14.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.021 4.021 3 O -0.282 6.282 4 C 0.309 3.691 5 O -0.416 6.416 6 C -0.063 4.063 7 N -0.243 5.243 8 C 0.036 3.964 9 C -0.576 4.576 10 H 0.084 0.916 11 C -0.159 4.159 12 N -0.568 5.568 13 Si 0.726 3.274 14 H -0.187 1.187 15 H -0.211 1.211 16 H -0.192 1.192 17 C -0.029 4.029 18 C -0.037 4.037 19 C -0.122 4.122 20 C 0.055 3.945 21 F -0.108 7.108 22 C 0.034 3.966 23 O -0.298 6.298 24 C -0.080 4.080 25 Cl -0.027 7.027 26 C -0.114 4.114 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.119 0.881 30 H 0.090 0.910 31 H 0.072 0.928 32 H 0.099 0.901 33 H 0.166 0.834 34 H 0.029 0.971 35 H 0.043 0.957 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.138 0.862 39 H 0.190 0.810 40 H 0.270 0.730 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.762 -1.192 -13.950 14.021 hybrid contribution 0.745 0.092 1.630 1.795 sum 1.507 -1.100 -12.320 12.460 Atomic orbital electron populations 1.21804 0.90088 1.04322 1.03750 1.23232 0.97270 0.79576 1.02027 1.86487 1.24134 1.33450 1.84159 1.24059 0.80389 0.93278 0.71361 1.90616 1.61014 1.44081 1.45840 1.21598 0.89133 0.89592 1.05953 1.62080 1.06085 1.29993 1.26139 1.20001 0.96100 0.94915 0.85415 1.21753 1.34741 1.08026 0.93079 0.91640 1.25353 0.96244 0.96975 0.97307 1.69980 1.47592 1.35046 1.04176 0.86418 0.80937 0.82214 0.77876 1.18710 1.21076 1.19230 1.21070 0.88404 0.90624 1.02790 1.19570 0.96181 0.96592 0.91395 1.21246 0.91929 0.99031 1.00042 1.17756 0.91674 1.04091 0.80982 1.91499 1.85189 1.89250 1.44829 1.17981 0.85010 1.03261 0.90386 1.84852 1.13133 1.39948 1.91845 1.21147 0.92400 1.05755 0.88735 1.98366 1.70219 1.95062 1.39064 1.21283 0.90929 0.98833 1.00396 0.91802 0.90592 0.88149 0.90999 0.92803 0.90079 0.83420 0.97139 0.95683 0.92573 0.92523 0.86186 0.81045 0.72958 0.84991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 10.29 71.98 0.74 -1.69 16 2 C 0.05 1.32 6.19 71.98 0.45 1.77 16 3 O -0.37 -11.23 10.22 -51.39 -0.53 -11.75 16 4 C 0.47 16.48 7.54 71.23 0.54 17.01 16 5 O -0.53 -22.11 14.91 21.96 0.33 -21.78 16 6 C 0.07 2.10 5.43 85.56 0.46 2.56 16 7 N -0.52 -18.79 4.29 -909.94 -3.91 -22.70 16 8 C 0.16 7.44 3.44 85.56 0.29 7.74 16 9 C -0.54 -27.09 7.23 25.60 0.19 -26.90 16 10 H 0.07 3.45 6.21 -2.91 -0.02 3.43 16 11 C 0.04 2.26 5.47 84.66 0.46 2.72 16 12 N -0.93 -53.71 13.96 21.45 0.30 -53.42 16 13 Si 0.90 43.97 27.37 68.60 1.88 45.85 16 14 H -0.26 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 16 H -0.27 -13.23 6.70 99.48 0.67 -12.56 16 17 C 0.10 2.91 4.89 85.56 0.42 3.33 16 18 C -0.04 -1.10 4.88 -19.86 -0.10 -1.20 16 19 C -0.10 -2.67 9.67 22.30 0.22 -2.45 16 20 C 0.08 2.04 7.31 22.45 0.16 2.20 16 21 F -0.13 -3.42 17.11 44.97 0.77 -2.65 16 22 C 0.08 2.31 6.70 22.54 0.15 2.47 16 23 O -0.49 -12.12 12.83 -93.35 -1.20 -13.32 16 24 C -0.05 -1.71 6.33 22.40 0.14 -1.57 16 25 Cl -0.06 -1.81 28.50 -2.72 -0.08 -1.89 16 26 C -0.09 -3.29 7.76 22.29 0.17 -3.12 16 27 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 28 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.71 8.13 -2.39 -0.02 1.69 16 31 H 0.05 1.49 8.13 -2.39 -0.02 1.47 16 32 H 0.08 2.88 6.43 -2.39 -0.02 2.87 16 33 H 0.15 3.27 7.81 -2.38 -0.02 3.25 16 34 H 0.01 0.54 6.01 -2.39 -0.01 0.52 16 35 H 0.03 1.19 5.36 -2.38 -0.01 1.18 16 36 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 37 H 0.06 1.93 6.28 -2.39 -0.01 1.92 16 38 H 0.12 2.50 7.80 -2.39 -0.02 2.48 16 39 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 40 H 0.41 6.06 9.06 -74.05 -0.67 5.39 16 41 H 0.13 5.37 7.37 -2.91 -0.02 5.35 16 Total: -1.00 -68.13 362.63 2.25 -65.88 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 0.38 Total: 12.91 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 4.30 Total: 2.86 kcal Atomic # 7 Polarization: -72.51 SS G_CDS: -3.61 Total: -76.11 kcal Atomic # 8 Polarization: -45.45 SS G_CDS: -1.40 Total: -46.85 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.77 Total: -2.65 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.88 Total: 45.85 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.08 Total: -1.89 kcal Total: -68.13 2.25 -65.88 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237992995.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.351 kcal (2) G-P(sol) polarization free energy of solvation -68.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds