Wall clock time and date at job start Wed Apr 1 2020 03:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42103 * 108.57781 * 2 1 4 4 O 1.42100 * 108.57655 * 228.97622 * 2 1 3 5 5 C 1.81391 * 101.92159 * 114.48798 * 2 1 3 6 6 C 1.53002 * 109.47394 * 179.97438 * 5 2 1 7 7 N 1.46499 * 109.47178 * 180.02562 * 6 5 2 8 8 C 1.34692 * 125.81282 * 125.00221 * 7 6 5 9 9 C 1.37847 * 107.39291 * 179.97438 * 8 7 6 10 10 C 1.48032 * 126.36835 * 179.97438 * 9 8 7 11 11 C 1.39990 * 119.49415 * 0.02562 * 10 9 8 12 12 C 1.35987 * 121.19097 * 180.02562 * 11 10 9 13 13 C 1.41063 * 120.10925 * 0.02562 * 12 11 10 14 14 C 1.40417 * 120.48565 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00121 * 205.40679 * 14 13 12 16 16 C 1.40250 * 120.00097 * 25.41779 * 14 13 12 17 17 N 1.30670 * 120.00394 * 16.91927 * 16 14 13 18 18 Si 1.86808 * 119.99886 * 196.92398 * 16 14 13 19 19 H 1.48499 * 109.46962 * 265.17585 * 18 16 14 20 20 H 1.48494 * 109.46977 * 25.18117 * 18 16 14 21 21 H 1.48503 * 109.46800 * 145.17744 * 18 16 14 22 22 C 1.46649 * 119.02221 * 0.23662 * 13 12 11 23 23 C 1.43202 * 120.56398 * 179.72896 * 22 13 12 24 24 N 9.52942 * 132.04593 * 184.36127 * 6 1 2 25 25 C 1.39083 * 118.86768 * 359.46560 * 22 13 12 26 26 C 1.41079 * 107.27063 * 0.26509 * 9 8 7 27 27 N 1.30556 * 108.11712 * 359.55194 * 26 9 8 28 28 H 1.08993 * 109.46914 * 305.51328 * 1 2 3 29 29 H 1.09001 * 109.46772 * 65.51085 * 1 2 3 30 30 H 1.08992 * 109.46932 * 185.50985 * 1 2 3 31 31 H 1.09005 * 109.47547 * 59.99951 * 5 2 1 32 32 H 1.09001 * 109.47285 * 300.00330 * 5 2 1 33 33 H 1.09005 * 109.46518 * 60.00094 * 6 5 2 34 34 H 1.09001 * 109.47287 * 300.00468 * 6 5 2 35 35 H 1.07999 * 126.30913 * 0.03646 * 8 7 6 36 36 H 1.07996 * 119.40400 * 0.02562 * 11 10 9 37 37 H 1.07999 * 119.94267 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00636 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.09626 * 180.27077 * 25 22 13 40 40 H 1.07998 * 125.94456 * 179.73664 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8196 1.7979 7 7 4.0081 -1.4143 3.1021 8 6 4.7835 -2.4949 3.3147 9 6 4.8098 -2.7221 4.6741 10 6 5.5381 -3.8077 5.3687 11 6 6.2903 -4.7213 4.6209 12 6 6.9723 -5.7319 5.2232 13 6 6.9308 -5.8762 6.6259 14 6 7.6316 -6.9171 7.2560 15 1 7.3022 -7.2862 8.2161 16 6 8.7595 -7.4774 6.6388 17 7 9.3560 -6.8406 5.6661 18 14 9.4090 -9.1341 7.2073 19 1 10.4913 -8.9263 8.2026 20 1 8.3068 -9.9109 7.8293 21 1 9.9452 -9.8819 6.0417 22 6 6.1403 -4.9264 7.4157 23 6 6.0704 -5.0455 8.8410 24 7 6.0170 -5.1375 9.9724 25 6 5.4642 -3.9048 6.7572 26 6 4.0081 -1.7319 5.2799 27 7 3.5411 -0.9562 4.3393 28 1 -0.3633 0.5969 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 1.7611 -1.7370 1.6664 32 1 1.7610 -0.1171 2.4042 33 1 4.1335 0.1816 1.7465 34 1 4.1329 -1.4384 1.0088 35 1 5.2921 -3.0757 2.5595 36 1 6.3297 -4.6218 3.5463 37 1 7.5460 -6.4257 4.6267 38 1 10.1358 -7.2283 5.2390 39 1 4.8798 -3.1918 7.3197 40 1 3.8165 -1.6310 6.3379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245478880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:03 Heat of formation + Delta-G solvation = 50.897402 kcal Electronic energy + Delta-G solvation = -25578.173187 eV Core-core repulsion = 21679.931644 eV Total energy + Delta-G solvation = -3898.241543 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.80578 -37.72187 -37.44524 -36.51258 -35.20810 -34.85431 -34.07831 -31.09348 -30.64215 -30.06247 -29.76697 -28.41909 -25.62312 -24.20858 -22.45105 -21.77188 -20.35162 -19.81230 -19.32594 -17.79552 -17.57392 -16.97553 -16.74443 -16.46795 -16.04647 -15.52054 -15.23455 -14.53920 -14.37987 -14.00891 -13.86881 -13.74186 -13.69332 -13.30782 -12.98613 -12.83008 -12.68695 -12.54963 -12.51684 -12.44756 -12.15260 -11.90771 -11.78521 -11.66984 -11.58655 -11.33973 -11.29509 -11.11256 -10.96597 -10.82465 -10.42899 -9.93685 -9.76687 -9.60261 -9.22605 -8.63169 -7.76497 -7.27844 -7.05414 -4.68916 -0.56220 1.92870 2.19424 2.20605 2.48457 2.57477 2.85179 2.88602 2.95325 3.13965 3.50343 3.52377 3.65206 3.89992 3.98601 4.15769 4.28576 4.29019 4.43300 4.44140 4.67460 4.88951 5.10812 5.14222 5.20317 5.31645 5.40472 5.47698 5.86540 5.93501 6.00481 6.20795 6.28735 6.64091 6.79001 6.90979 7.01548 7.15121 7.22527 7.53665 7.65056 7.78621 7.83948 7.99132 8.18963 8.37674 8.53299 8.81253 9.68107 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002029 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.987690 B =13799.339455 C =14832.815845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.652 4.652 2 S 2.427 3.573 3 O -0.935 6.935 4 O -0.936 6.936 5 C -0.631 4.631 6 C 0.156 3.844 7 N -0.375 5.375 8 C 0.021 3.979 9 C -0.130 4.130 10 C -0.154 4.154 11 C -0.063 4.063 12 C -0.163 4.163 13 C 0.152 3.848 14 C -0.422 4.422 15 H 0.087 0.913 16 C 0.075 3.925 17 N -0.758 5.758 18 Si 0.915 3.085 19 H -0.265 1.265 20 H -0.255 1.255 21 H -0.269 1.269 22 C -0.187 4.187 23 C 0.300 3.700 24 N -0.510 5.510 25 C -0.011 4.011 26 C 0.048 3.952 27 N -0.306 5.306 28 H 0.130 0.870 29 H 0.131 0.869 30 H 0.130 0.870 31 H 0.139 0.861 32 H 0.146 0.854 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.173 0.827 36 H 0.092 0.908 37 H 0.125 0.875 38 H 0.291 0.709 39 H 0.099 0.901 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.989 8.216 -13.841 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.802 4.802 2 S 2.608 3.392 3 O -0.932 6.932 4 O -0.933 6.933 5 C -0.759 4.759 6 C 0.032 3.968 7 N -0.159 5.159 8 C -0.123 4.123 9 C -0.141 4.141 10 C -0.157 4.157 11 C -0.082 4.082 12 C -0.182 4.182 13 C 0.147 3.853 14 C -0.449 4.449 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.380 5.380 18 Si 0.738 3.262 19 H -0.190 1.190 20 H -0.178 1.178 21 H -0.194 1.194 22 C -0.193 4.193 23 C -0.009 4.009 24 N -0.190 5.190 25 C -0.032 4.032 26 C -0.138 4.138 27 N -0.127 5.127 28 H 0.149 0.851 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.157 0.843 32 H 0.165 0.835 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.190 0.810 36 H 0.110 0.890 37 H 0.143 0.857 38 H 0.103 0.897 39 H 0.117 0.883 40 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.016 9.439 -13.309 20.264 hybrid contribution 0.304 -1.665 0.550 1.780 sum -11.712 7.774 -12.759 18.984 Atomic orbital electron populations 1.30225 1.26117 1.11865 1.12009 1.07681 0.78688 0.75770 0.77070 1.93627 1.79077 1.34227 1.86234 1.93626 1.79129 1.67037 1.53481 1.30777 1.05471 1.15320 1.24338 1.21099 0.91469 1.01284 0.82919 1.47924 1.39565 1.23460 1.04992 1.22741 0.99373 0.92210 0.97952 1.19322 1.04099 0.99595 0.91078 1.17109 1.07656 0.99254 0.91666 1.20388 0.95816 0.94568 0.97458 1.20891 1.02922 1.00404 0.93961 1.18466 0.87265 0.88337 0.91280 1.19779 1.07440 1.12872 1.04849 0.89534 1.26142 0.95992 0.99143 0.93593 1.69722 1.15007 1.36033 1.17209 0.86150 0.79972 0.80527 0.79590 1.18977 1.17848 1.19396 1.16761 1.15724 1.03409 0.83400 1.25794 0.91044 0.91376 0.92691 1.81040 1.13615 1.11523 1.12773 1.20424 0.95375 0.94514 0.92899 1.23946 0.97251 0.93734 0.98917 1.76928 1.23639 1.23586 0.88593 0.85101 0.85026 0.85141 0.84289 0.83550 0.88572 0.87337 0.81018 0.88963 0.85737 0.89733 0.88273 0.80237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -1.70 10.62 101.05 1.07 -0.62 16 2 S 2.43 13.97 5.36 -107.50 -0.58 13.39 16 3 O -0.93 -8.97 18.10 -57.83 -1.05 -10.02 16 4 O -0.94 -8.73 18.10 -57.83 -1.05 -9.77 16 5 C -0.63 -3.91 5.98 37.16 0.22 -3.69 16 6 C 0.16 1.42 6.50 -4.04 -0.03 1.39 16 7 N -0.38 -4.94 3.66 -60.75 -0.22 -5.16 16 8 C 0.02 0.29 10.86 -16.44 -0.18 0.11 16 9 C -0.13 -2.16 6.07 -104.95 -0.64 -2.80 16 10 C -0.15 -2.92 5.88 -104.80 -0.62 -3.53 16 11 C -0.06 -1.22 9.44 -39.73 -0.37 -1.59 16 12 C -0.16 -3.55 8.62 -39.32 -0.34 -3.88 16 13 C 0.15 3.56 5.73 -104.61 -0.60 2.96 16 14 C -0.42 -10.03 8.55 -38.01 -0.33 -10.35 16 15 H 0.09 2.09 7.38 -52.49 -0.39 1.70 16 16 C 0.07 1.65 5.16 -17.29 -0.09 1.56 16 17 N -0.76 -16.80 10.96 55.56 0.61 -16.19 16 18 Si 0.91 16.71 29.59 -169.99 -5.03 11.67 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 H -0.27 -4.71 7.11 56.52 0.40 -4.30 16 22 C -0.19 -4.17 5.93 -104.26 -0.62 -4.79 16 23 C 0.30 6.92 14.30 -22.46 -0.32 6.60 16 24 N -0.51 -12.12 18.54 41.85 0.78 -11.34 16 25 C -0.01 -0.22 9.28 -38.84 -0.36 -0.58 16 26 C 0.05 0.74 11.40 -17.02 -0.19 0.54 16 27 N -0.31 -4.58 12.34 30.83 0.38 -4.20 16 28 H 0.13 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.13 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.13 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.14 0.69 8.14 -51.92 -0.42 0.26 16 32 H 0.15 0.85 8.14 -51.92 -0.42 0.43 16 33 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.11 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.17 2.01 7.25 -52.49 -0.38 1.63 16 36 H 0.09 1.53 6.92 -52.49 -0.36 1.17 16 37 H 0.12 2.76 6.20 -52.49 -0.33 2.43 16 38 H 0.29 5.77 8.29 -40.82 -0.34 5.43 16 39 H 0.10 1.73 6.98 -52.49 -0.37 1.36 16 40 H 0.18 2.41 7.30 -52.49 -0.38 2.03 16 LS Contribution 369.54 15.07 5.57 5.57 Total: -1.00 -33.08 369.54 -8.27 -41.35 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -4.30 Total: 3.38 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -3.38 Total: -18.67 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: 1.54 Total: -36.90 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -2.09 Total: -19.79 kcal Atomic # 14 Polarization: 16.71 SS G_CDS: -5.03 Total: 11.67 kcal Atomic # 16 Polarization: 13.97 SS G_CDS: -0.58 Total: 13.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.08 -8.27 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245478880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.243 kcal (2) G-P(sol) polarization free energy of solvation -33.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds