Wall clock time and date at job start Wed Apr 1 2020 03:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42103 * 108.57781 * 2 1 4 4 O 1.42100 * 108.57655 * 228.97622 * 2 1 3 5 5 C 1.81391 * 101.92159 * 114.48798 * 2 1 3 6 6 C 1.53002 * 109.47394 * 179.97438 * 5 2 1 7 7 N 1.46499 * 109.47178 * 180.02562 * 6 5 2 8 8 C 1.34692 * 125.81282 * 125.00221 * 7 6 5 9 9 C 1.37847 * 107.39291 * 179.97438 * 8 7 6 10 10 C 1.48032 * 126.36835 * 179.97438 * 9 8 7 11 11 C 1.39990 * 119.49415 * 0.02562 * 10 9 8 12 12 C 1.35987 * 121.19097 * 180.02562 * 11 10 9 13 13 C 1.41063 * 120.10925 * 0.02562 * 12 11 10 14 14 C 1.40417 * 120.48565 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00121 * 205.40679 * 14 13 12 16 16 C 1.40250 * 120.00097 * 25.41779 * 14 13 12 17 17 N 1.30670 * 120.00394 * 16.91927 * 16 14 13 18 18 Si 1.86808 * 119.99886 * 196.92398 * 16 14 13 19 19 H 1.48499 * 109.46962 * 265.17585 * 18 16 14 20 20 H 1.48494 * 109.46977 * 25.18117 * 18 16 14 21 21 H 1.48503 * 109.46800 * 145.17744 * 18 16 14 22 22 C 1.46649 * 119.02221 * 0.23662 * 13 12 11 23 23 C 1.43202 * 120.56398 * 179.72896 * 22 13 12 24 24 N 9.52942 * 132.04593 * 184.36127 * 6 1 2 25 25 C 1.39083 * 118.86768 * 359.46560 * 22 13 12 26 26 C 1.41079 * 107.27063 * 0.26509 * 9 8 7 27 27 N 1.30556 * 108.11712 * 359.55194 * 26 9 8 28 28 H 1.08993 * 109.46914 * 305.51328 * 1 2 3 29 29 H 1.09001 * 109.46772 * 65.51085 * 1 2 3 30 30 H 1.08992 * 109.46932 * 185.50985 * 1 2 3 31 31 H 1.09005 * 109.47547 * 59.99951 * 5 2 1 32 32 H 1.09001 * 109.47285 * 300.00330 * 5 2 1 33 33 H 1.09005 * 109.46518 * 60.00094 * 6 5 2 34 34 H 1.09001 * 109.47287 * 300.00468 * 6 5 2 35 35 H 1.07999 * 126.30913 * 0.03646 * 8 7 6 36 36 H 1.07996 * 119.40400 * 0.02562 * 11 10 9 37 37 H 1.07999 * 119.94267 * 179.97438 * 12 11 10 38 38 H 0.96996 * 120.00636 * 180.02562 * 17 16 14 39 39 H 1.07995 * 120.09626 * 180.27077 * 25 22 13 40 40 H 1.07998 * 125.94456 * 179.73664 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8196 1.7979 7 7 4.0081 -1.4143 3.1021 8 6 4.7835 -2.4949 3.3147 9 6 4.8098 -2.7221 4.6741 10 6 5.5381 -3.8077 5.3687 11 6 6.2903 -4.7213 4.6209 12 6 6.9723 -5.7319 5.2232 13 6 6.9308 -5.8762 6.6259 14 6 7.6316 -6.9171 7.2560 15 1 7.3022 -7.2862 8.2161 16 6 8.7595 -7.4774 6.6388 17 7 9.3560 -6.8406 5.6661 18 14 9.4090 -9.1341 7.2073 19 1 10.4913 -8.9263 8.2026 20 1 8.3068 -9.9109 7.8293 21 1 9.9452 -9.8819 6.0417 22 6 6.1403 -4.9264 7.4157 23 6 6.0704 -5.0455 8.8410 24 7 6.0170 -5.1375 9.9724 25 6 5.4642 -3.9048 6.7572 26 6 4.0081 -1.7319 5.2799 27 7 3.5411 -0.9562 4.3393 28 1 -0.3633 0.5969 0.8365 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0229 0.0987 31 1 1.7611 -1.7370 1.6664 32 1 1.7610 -0.1171 2.4042 33 1 4.1335 0.1816 1.7465 34 1 4.1329 -1.4384 1.0088 35 1 5.2921 -3.0757 2.5595 36 1 6.3297 -4.6218 3.5463 37 1 7.5460 -6.4257 4.6267 38 1 10.1358 -7.2283 5.2390 39 1 4.8798 -3.1918 7.3197 40 1 3.8165 -1.6310 6.3379 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245478880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:02 Heat of formation + Delta-G solvation = 29.613168 kcal Electronic energy + Delta-G solvation = -25579.096140 eV Core-core repulsion = 21679.931644 eV Total energy + Delta-G solvation = -3899.164496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.94182 -39.33113 -38.03526 -37.10795 -36.95507 -36.08239 -35.33752 -32.58165 -31.74982 -31.22818 -30.35326 -29.75727 -27.05685 -25.13999 -23.98053 -23.24929 -21.58204 -21.02121 -19.82480 -19.42041 -18.72564 -18.04019 -17.35500 -17.12044 -17.00744 -16.93913 -16.04386 -15.91672 -15.57817 -15.37956 -14.86576 -14.77817 -14.50565 -14.33212 -14.02761 -13.91498 -13.85741 -13.68479 -13.55720 -13.44029 -13.37944 -13.16029 -13.06311 -12.87546 -12.85965 -12.73188 -12.45027 -12.28726 -12.10096 -11.77520 -11.65568 -11.48180 -11.28466 -11.17672 -10.31295 -10.07394 -9.40095 -8.87429 -8.53783 -6.38485 -1.00894 0.46573 0.72648 1.13102 1.38250 1.43652 1.51730 1.61933 1.80791 2.04982 2.09129 2.15690 2.57870 2.66111 2.79206 3.09702 3.37270 3.59299 3.66625 3.78661 3.95652 4.07587 4.13201 4.16589 4.23244 4.40640 4.47052 4.54274 4.71638 4.74936 4.88450 4.95240 5.00998 5.01806 5.18574 5.38588 5.56606 5.67678 5.89718 5.99861 6.18180 6.18963 6.22612 6.51681 6.68905 6.82588 6.87416 7.01712 8.09870 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019631 B = 0.002029 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.987690 B =13799.339455 C =14832.815845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.635 4.635 2 S 2.444 3.556 3 O -0.979 6.979 4 O -0.975 6.975 5 C -0.626 4.626 6 C 0.132 3.868 7 N -0.368 5.368 8 C 0.042 3.958 9 C -0.170 4.170 10 C -0.133 4.133 11 C -0.059 4.059 12 C -0.177 4.177 13 C 0.129 3.871 14 C -0.461 4.461 15 H 0.068 0.932 16 C 0.046 3.954 17 N -0.782 5.782 18 Si 0.975 3.025 19 H -0.267 1.267 20 H -0.263 1.263 21 H -0.251 1.251 22 C -0.207 4.207 23 C 0.305 3.695 24 N -0.533 5.533 25 C -0.019 4.019 26 C 0.043 3.957 27 N -0.319 5.319 28 H 0.151 0.849 29 H 0.142 0.858 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.100 0.900 34 H 0.131 0.869 35 H 0.201 0.799 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.301 0.699 39 H 0.120 0.880 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 8.911 -15.997 22.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.788 4.788 2 S 2.629 3.371 3 O -0.976 6.976 4 O -0.972 6.972 5 C -0.754 4.754 6 C 0.010 3.990 7 N -0.150 5.150 8 C -0.104 4.104 9 C -0.181 4.181 10 C -0.136 4.136 11 C -0.078 4.078 12 C -0.196 4.196 13 C 0.124 3.876 14 C -0.489 4.489 15 H 0.086 0.914 16 C -0.176 4.176 17 N -0.404 5.404 18 Si 0.795 3.205 19 H -0.191 1.191 20 H -0.187 1.187 21 H -0.175 1.175 22 C -0.214 4.214 23 C -0.003 4.003 24 N -0.213 5.213 25 C -0.040 4.040 26 C -0.143 4.143 27 N -0.140 5.140 28 H 0.169 0.831 29 H 0.161 0.839 30 H 0.171 0.829 31 H 0.174 0.826 32 H 0.170 0.830 33 H 0.119 0.881 34 H 0.149 0.851 35 H 0.217 0.783 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.137 0.863 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.631 10.173 -15.488 23.003 hybrid contribution 0.608 -1.649 1.020 2.032 sum -13.022 8.524 -14.468 21.250 Atomic orbital electron populations 1.30072 1.21110 1.14014 1.13615 1.06982 0.80206 0.73989 0.75966 1.93571 1.81170 1.36233 1.86641 1.93575 1.81137 1.67613 1.54902 1.30723 1.03468 1.16568 1.24618 1.21605 0.93910 1.01930 0.81518 1.48288 1.38235 1.22708 1.05791 1.23190 0.97734 0.91718 0.97723 1.19239 1.06294 1.00346 0.92264 1.17360 1.05907 0.98944 0.91393 1.20709 0.94517 0.93423 0.99164 1.20886 1.03978 1.01463 0.93321 1.18750 0.87842 0.88757 0.92288 1.19814 1.09284 1.14774 1.04987 0.91393 1.26729 0.95527 1.01678 0.93639 1.69711 1.15618 1.37170 1.17946 0.85276 0.78858 0.76821 0.79513 1.19141 1.18709 1.17461 1.16984 1.16891 1.04450 0.83026 1.26045 0.90493 0.90795 0.92955 1.81008 1.14651 1.12373 1.13289 1.20659 0.95413 0.94237 0.93656 1.24167 0.96936 0.93398 0.99780 1.76918 1.24123 1.23770 0.89199 0.83072 0.83931 0.82905 0.82609 0.82976 0.88135 0.85079 0.78276 0.85784 0.86466 0.88741 0.86255 0.79136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.63 -0.83 10.62 113.37 1.20 0.37 16 2 S 2.44 22.85 5.36 -56.49 -0.30 22.55 16 3 O -0.98 -17.67 18.10 -127.37 -2.31 -19.98 16 4 O -0.98 -16.58 18.10 -127.37 -2.30 -18.88 16 5 C -0.63 -5.91 5.98 71.98 0.43 -5.48 16 6 C 0.13 2.03 6.50 86.38 0.56 2.59 16 7 N -0.37 -8.54 3.66 -346.11 -1.27 -9.81 16 8 C 0.04 1.06 10.86 84.16 0.91 1.97 16 9 C -0.17 -5.25 6.07 -20.08 -0.12 -5.37 16 10 C -0.13 -4.86 5.88 -19.98 -0.12 -4.98 16 11 C -0.06 -2.20 9.44 22.17 0.21 -1.99 16 12 C -0.18 -7.79 8.62 22.44 0.19 -7.60 16 13 C 0.13 6.23 5.73 -19.86 -0.11 6.12 16 14 C -0.46 -22.89 8.55 23.29 0.20 -22.69 16 15 H 0.07 3.49 7.38 -2.91 -0.02 3.47 16 16 C 0.05 2.05 5.16 85.35 0.44 2.49 16 17 N -0.78 -35.17 10.96 21.88 0.24 -34.93 16 18 Si 0.98 34.79 29.59 68.60 2.03 36.83 16 19 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 20 H -0.26 -9.61 7.11 99.48 0.71 -8.90 16 21 H -0.25 -8.13 7.11 99.48 0.71 -7.42 16 22 C -0.21 -9.47 5.93 -19.63 -0.12 -9.59 16 23 C 0.31 14.53 14.30 88.33 1.26 15.79 16 24 N -0.53 -26.05 18.54 19.01 0.35 -25.70 16 25 C -0.02 -0.73 9.28 22.75 0.21 -0.52 16 26 C 0.04 1.23 11.40 85.58 0.98 2.20 16 27 N -0.32 -8.75 12.34 -56.36 -0.70 -9.45 16 28 H 0.15 -0.29 8.14 -2.39 -0.02 -0.31 16 29 H 0.14 0.04 8.14 -2.39 -0.02 0.02 16 30 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 31 H 0.16 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.13 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.20 3.77 7.25 -2.91 -0.02 3.75 16 36 H 0.12 3.75 6.92 -2.91 -0.02 3.73 16 37 H 0.12 5.27 6.20 -2.91 -0.02 5.25 16 38 H 0.30 11.95 8.29 -92.71 -0.77 11.18 16 39 H 0.12 4.09 6.98 -2.91 -0.02 4.07 16 40 H 0.19 4.81 7.30 -2.91 -0.02 4.79 16 Total: -1.00 -73.49 369.54 2.97 -70.52 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 1.09 Total: 15.54 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 6.13 Total: -26.68 kcal Atomic # 7 Polarization: -78.52 SS G_CDS: -1.37 Total: -79.89 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -4.61 Total: -38.86 kcal Atomic # 14 Polarization: 34.79 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 16 Polarization: 22.85 SS G_CDS: -0.30 Total: 22.55 kcal Total: -73.49 2.97 -70.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245478880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.136 kcal (2) G-P(sol) polarization free energy of solvation -73.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds