Wall clock time and date at job start Wed Apr 1 2020 02:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 C 1.53006 * 109.47090 * 239.99673 * 2 1 3 5 5 S 1.81398 * 109.46966 * 179.97438 * 4 2 1 6 6 O 1.42092 * 110.54662 * 291.62720 * 5 4 2 7 7 O 1.42103 * 110.54115 * 68.38187 * 5 4 2 8 8 C 1.76206 * 104.44827 * 180.02562 * 5 4 2 9 9 C 1.38233 * 119.99870 * 269.73096 * 8 5 4 10 10 C 1.38238 * 119.99713 * 179.76696 * 9 8 5 11 11 C 1.38233 * 120.00041 * 0.50260 * 10 9 8 12 12 C 1.38230 * 119.99784 * 359.74853 * 11 10 9 13 13 C 1.38232 * 120.00369 * 0.02562 * 12 11 10 14 14 N 1.46499 * 109.46934 * 120.00024 * 2 1 3 15 15 C 1.38230 * 120.00253 * 277.35388 * 14 2 1 16 16 C 1.38995 * 119.99665 * 355.68794 * 15 14 2 17 17 H 1.07993 * 120.00093 * 313.92537 * 16 15 14 18 18 C 1.40822 * 119.99326 * 133.64392 * 16 15 14 19 19 N 1.30337 * 120.00597 * 343.23301 * 18 16 15 20 20 Si 1.86805 * 119.99534 * 163.23650 * 18 16 15 21 21 H 1.48498 * 109.47125 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47020 * 119.99783 * 20 18 16 23 23 H 1.48497 * 109.47091 * 239.99778 * 20 18 16 24 24 C 1.41145 * 120.00288 * 175.68576 * 15 14 2 25 25 C 1.43203 * 119.99731 * 353.68291 * 24 15 14 26 26 N 4.95519 * 104.72288 * 132.72328 * 2 1 3 27 27 C 1.43200 * 119.99998 * 173.67696 * 24 15 14 28 28 N 5.93700 * 103.17299 * 84.07808 * 2 1 3 29 29 H 1.08995 * 109.47108 * 300.00454 * 1 2 3 30 30 H 1.09005 * 109.46544 * 60.00065 * 1 2 3 31 31 H 1.08996 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47179 * 300.00591 * 4 2 1 33 33 H 1.09008 * 109.46480 * 60.00622 * 4 2 1 34 34 H 1.08007 * 120.00295 * 359.97438 * 9 8 5 35 35 H 1.08004 * 119.99796 * 180.23452 * 10 9 8 36 36 H 1.08000 * 120.00007 * 179.72173 * 11 10 9 37 37 H 1.08002 * 119.99936 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.00364 * 179.97438 * 13 12 11 39 39 H 0.96998 * 119.99744 * 97.35600 * 14 2 1 40 40 H 0.97000 * 120.00128 * 185.07647 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 16 3.8540 -0.7207 -1.2496 6 8 4.3522 0.5958 -1.4437 7 8 4.3531 -1.5465 -0.2064 8 6 4.2937 -1.5733 -2.7276 9 6 4.4721 -2.9439 -2.7078 10 6 4.8123 -3.6135 -3.8684 11 6 4.9843 -2.9110 -5.0465 12 6 4.8110 -1.5398 -5.0651 13 6 4.4662 -0.8708 -3.9056 14 7 2.0183 -0.6906 1.1962 15 6 2.1042 -0.0138 2.3984 16 6 1.8131 1.3442 2.4537 17 1 2.2208 2.0145 1.7116 18 6 0.9818 1.8449 3.4741 19 7 0.2292 1.0312 4.1598 20 14 0.9575 3.6757 3.8447 21 1 1.8945 4.3781 2.9315 22 1 -0.4163 4.2030 3.6448 23 1 1.3745 3.9014 5.2519 24 6 2.4875 -0.7017 3.5698 25 6 2.6558 -2.1235 3.5424 26 7 2.7894 -3.2515 3.5208 27 6 2.7080 0.0222 4.7855 28 7 2.8830 0.5964 5.7499 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7490 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 4.3424 -3.4922 -1.7863 35 1 4.9480 -4.6848 -3.8538 36 1 5.2545 -3.4335 -5.9522 37 1 4.9457 -0.9909 -5.9854 38 1 4.3312 0.2007 -3.9200 39 1 2.2813 -1.6228 1.1445 40 1 -0.3971 1.3829 4.8117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255802525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:16 Heat of formation + Delta-G solvation = 15.523479 kcal Electronic energy + Delta-G solvation = -27336.630857 eV Core-core repulsion = 23436.855386 eV Total energy + Delta-G solvation = -3899.775471 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.36365 -38.03274 -37.01729 -35.83165 -35.54425 -34.61833 -33.71773 -32.15177 -31.58912 -31.32264 -28.55173 -27.71767 -26.69334 -23.52937 -23.02768 -21.92108 -20.88716 -19.13249 -18.32457 -18.06019 -17.26456 -16.57275 -16.36712 -16.08163 -15.73321 -15.54453 -15.02142 -14.78628 -14.60242 -13.82470 -13.49313 -13.27358 -13.11730 -13.09670 -12.73074 -12.50315 -12.44436 -12.29261 -11.98304 -11.95205 -11.89649 -11.77265 -11.64797 -11.54666 -11.46838 -11.27595 -11.11839 -10.93867 -10.79057 -10.67045 -10.64429 -10.45959 -10.06506 -9.80900 -9.65262 -9.35644 -9.15263 -7.11692 -6.52105 -5.10501 -0.01012 0.56980 0.98060 2.69261 2.87720 3.04672 3.05892 3.16994 3.19353 3.76588 3.82655 3.87443 4.07757 4.14046 4.35480 4.45150 4.49140 4.57384 4.60117 4.66638 4.70935 4.82322 5.00711 5.18893 5.27512 5.36595 5.51143 5.59048 5.61799 5.62888 5.80593 5.84381 5.90348 5.99177 6.02457 6.22246 6.51539 6.65365 6.65923 6.79796 7.04847 7.40910 7.81119 8.28479 8.44294 8.60882 9.15702 9.52810 9.85393 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003526 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.346698 B = 7938.662470 C = 8793.560820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.168 3.832 3 H 0.103 0.897 4 C -0.619 4.619 5 S 2.491 3.509 6 O -0.932 6.932 7 O -0.916 6.916 8 C -0.662 4.662 9 C -0.023 4.023 10 C -0.142 4.142 11 C -0.070 4.070 12 C -0.143 4.143 13 C -0.027 4.027 14 N -0.749 5.749 15 C 0.451 3.549 16 C -0.497 4.497 17 H 0.103 0.897 18 C 0.100 3.900 19 N -0.745 5.745 20 Si 0.906 3.094 21 H -0.254 1.254 22 H -0.271 1.271 23 H -0.263 1.263 24 C -0.281 4.281 25 C 0.306 3.694 26 N -0.538 5.538 27 C 0.353 3.647 28 N -0.541 5.541 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.144 0.856 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.393 0.607 40 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.036 -1.683 -22.174 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.061 3.939 3 H 0.121 0.879 4 C -0.749 4.749 5 S 2.670 3.330 6 O -0.929 6.929 7 O -0.913 6.913 8 C -0.747 4.747 9 C -0.042 4.042 10 C -0.161 4.161 11 C -0.088 4.088 12 C -0.162 4.162 13 C -0.045 4.045 14 N -0.379 5.379 15 C 0.338 3.662 16 C -0.529 4.529 17 H 0.120 0.880 18 C -0.128 4.128 19 N -0.366 5.366 20 Si 0.729 3.271 21 H -0.177 1.177 22 H -0.196 1.196 23 H -0.188 1.188 24 C -0.301 4.301 25 C -0.001 4.001 26 N -0.221 5.221 27 C 0.044 3.956 28 N -0.223 5.223 29 H 0.104 0.896 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.229 0.771 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.909 -2.147 -20.075 20.210 hybrid contribution -0.637 0.087 -1.009 1.196 sum 0.272 -2.059 -21.084 21.186 Atomic orbital electron populations 1.22120 0.93614 1.02322 1.03130 1.20441 0.96456 0.96547 0.80462 0.87885 1.30717 1.24895 1.11346 1.07957 1.05803 0.77986 0.75020 0.74187 1.93567 1.77117 1.36778 1.85427 1.93626 1.76814 1.68415 1.52449 1.30904 1.17880 1.06239 1.19705 1.21080 0.91759 0.92235 0.99147 1.21345 1.01269 1.00598 0.92848 1.21498 0.94624 0.94531 0.98180 1.21315 1.01492 0.94802 0.98587 1.21024 0.92306 1.00189 0.91012 1.45492 1.70649 1.13508 1.08258 1.16980 0.78564 0.90188 0.80466 1.19080 1.29495 0.91691 1.12628 0.87972 1.25808 0.93552 1.00965 0.92503 1.69486 1.13261 1.37978 1.15910 0.86247 0.79123 0.81158 0.80561 1.17735 1.19600 1.18768 1.12604 1.43728 0.82580 0.91167 1.25415 0.90185 0.92049 0.92415 1.81031 1.19360 1.12517 1.09181 1.24301 0.89035 0.91442 0.90845 1.80944 1.19191 1.09963 1.12217 0.89576 0.92494 0.92705 0.84319 0.83576 0.83813 0.84983 0.85316 0.85041 0.84019 0.77093 0.89616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.44 37.16 0.35 -1.60 16 2 C 0.17 2.34 2.48 -67.93 -0.17 2.18 16 3 H 0.10 1.45 6.65 -51.93 -0.35 1.10 16 4 C -0.62 -6.27 5.52 37.16 0.21 -6.07 16 5 S 2.49 33.16 4.94 -107.50 -0.53 32.63 16 6 O -0.93 -14.75 17.12 -57.54 -0.99 -15.73 16 7 O -0.92 -15.56 15.79 -57.54 -0.91 -16.47 16 8 C -0.66 -7.41 5.66 -39.59 -0.22 -7.63 16 9 C -0.02 -0.25 9.47 -39.58 -0.37 -0.62 16 10 C -0.14 -1.21 10.05 -39.58 -0.40 -1.61 16 11 C -0.07 -0.53 10.05 -39.59 -0.40 -0.93 16 12 C -0.14 -1.14 10.05 -39.59 -0.40 -1.54 16 13 C -0.03 -0.26 9.47 -39.59 -0.37 -0.63 16 14 N -0.75 -13.52 4.31 -51.92 -0.22 -13.75 16 15 C 0.45 9.83 6.10 -83.60 -0.51 9.32 16 16 C -0.50 -10.68 6.97 -38.32 -0.27 -10.95 16 17 H 0.10 2.03 7.00 -52.49 -0.37 1.67 16 18 C 0.10 2.19 4.15 -17.21 -0.07 2.11 16 19 N -0.75 -17.19 11.50 55.59 0.64 -16.55 16 20 Si 0.91 17.50 29.60 -169.99 -5.03 12.47 16 21 H -0.25 -4.76 7.11 56.52 0.40 -4.36 16 22 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.28 -6.82 5.39 -104.94 -0.57 -7.39 16 25 C 0.31 7.46 14.11 -22.47 -0.32 7.15 16 26 N -0.54 -13.28 18.54 41.84 0.78 -12.51 16 27 C 0.35 9.15 11.96 -22.47 -0.27 8.88 16 28 N -0.54 -14.45 18.54 41.84 0.78 -13.68 16 29 H 0.09 1.33 7.75 -51.93 -0.40 0.93 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.14 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.15 0.94 8.14 -51.92 -0.42 0.51 16 34 H 0.14 1.43 7.57 -52.48 -0.40 1.03 16 35 H 0.13 0.81 8.06 -52.48 -0.42 0.39 16 36 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.14 1.19 7.57 -52.48 -0.40 0.79 16 39 H 0.39 7.10 6.64 -40.82 -0.27 6.83 16 40 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 LS Contribution 370.74 15.07 5.59 5.59 Total: -1.00 -32.58 370.74 -7.96 -40.54 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -4.27 Total: 6.80 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -3.78 Total: -9.33 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 1.97 Total: -56.49 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.89 Total: -32.20 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.47 kcal Atomic # 16 Polarization: 33.16 SS G_CDS: -0.53 Total: 32.63 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.58 -7.96 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255802525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.060 kcal (2) G-P(sol) polarization free energy of solvation -32.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds