Wall clock time and date at job start Wed Apr 1 2020 02:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47070 * 2 1 4 4 C 1.53006 * 109.47090 * 239.99673 * 2 1 3 5 5 S 1.81398 * 109.46966 * 179.97438 * 4 2 1 6 6 O 1.42092 * 110.54662 * 291.62720 * 5 4 2 7 7 O 1.42103 * 110.54115 * 68.38187 * 5 4 2 8 8 C 1.76206 * 104.44827 * 180.02562 * 5 4 2 9 9 C 1.38233 * 119.99870 * 269.73096 * 8 5 4 10 10 C 1.38238 * 119.99713 * 179.76696 * 9 8 5 11 11 C 1.38233 * 120.00041 * 0.50260 * 10 9 8 12 12 C 1.38230 * 119.99784 * 359.74853 * 11 10 9 13 13 C 1.38232 * 120.00369 * 0.02562 * 12 11 10 14 14 N 1.46499 * 109.46934 * 120.00024 * 2 1 3 15 15 C 1.38230 * 120.00253 * 277.35388 * 14 2 1 16 16 C 1.38995 * 119.99665 * 355.68794 * 15 14 2 17 17 H 1.07993 * 120.00093 * 313.92537 * 16 15 14 18 18 C 1.40822 * 119.99326 * 133.64392 * 16 15 14 19 19 N 1.30337 * 120.00597 * 343.23301 * 18 16 15 20 20 Si 1.86805 * 119.99534 * 163.23650 * 18 16 15 21 21 H 1.48498 * 109.47125 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47020 * 119.99783 * 20 18 16 23 23 H 1.48497 * 109.47091 * 239.99778 * 20 18 16 24 24 C 1.41145 * 120.00288 * 175.68576 * 15 14 2 25 25 C 1.43203 * 119.99731 * 353.68291 * 24 15 14 26 26 N 4.95519 * 104.72288 * 132.72328 * 2 1 3 27 27 C 1.43200 * 119.99998 * 173.67696 * 24 15 14 28 28 N 5.93700 * 103.17299 * 84.07808 * 2 1 3 29 29 H 1.08995 * 109.47108 * 300.00454 * 1 2 3 30 30 H 1.09005 * 109.46544 * 60.00065 * 1 2 3 31 31 H 1.08996 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47179 * 300.00591 * 4 2 1 33 33 H 1.09008 * 109.46480 * 60.00622 * 4 2 1 34 34 H 1.08007 * 120.00295 * 359.97438 * 9 8 5 35 35 H 1.08004 * 119.99796 * 180.23452 * 10 9 8 36 36 H 1.08000 * 120.00007 * 179.72173 * 11 10 9 37 37 H 1.08002 * 119.99936 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.00364 * 179.97438 * 13 12 11 39 39 H 0.96998 * 119.99744 * 97.35600 * 14 2 1 40 40 H 0.97000 * 120.00128 * 185.07647 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2493 5 16 3.8540 -0.7207 -1.2496 6 8 4.3522 0.5958 -1.4437 7 8 4.3531 -1.5465 -0.2064 8 6 4.2937 -1.5733 -2.7276 9 6 4.4721 -2.9439 -2.7078 10 6 4.8123 -3.6135 -3.8684 11 6 4.9843 -2.9110 -5.0465 12 6 4.8110 -1.5398 -5.0651 13 6 4.4662 -0.8708 -3.9056 14 7 2.0183 -0.6906 1.1962 15 6 2.1042 -0.0138 2.3984 16 6 1.8131 1.3442 2.4537 17 1 2.2208 2.0145 1.7116 18 6 0.9818 1.8449 3.4741 19 7 0.2292 1.0312 4.1598 20 14 0.9575 3.6757 3.8447 21 1 1.8945 4.3781 2.9315 22 1 -0.4163 4.2030 3.6448 23 1 1.3745 3.9014 5.2519 24 6 2.4875 -0.7017 3.5698 25 6 2.6558 -2.1235 3.5424 26 7 2.7894 -3.2515 3.5208 27 6 2.7080 0.0222 4.7855 28 7 2.8830 0.5964 5.7499 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.6766 -1.7490 -1.2493 33 1 1.6767 -0.2074 -2.1393 34 1 4.3424 -3.4922 -1.7863 35 1 4.9480 -4.6848 -3.8538 36 1 5.2545 -3.4335 -5.9522 37 1 4.9457 -0.9909 -5.9854 38 1 4.3312 0.2007 -3.9200 39 1 2.2813 -1.6228 1.1445 40 1 -0.3971 1.3829 4.8117 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255802525.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:15 Heat of formation + Delta-G solvation = -5.796584 kcal Electronic energy + Delta-G solvation = -27337.555364 eV Core-core repulsion = 23436.855386 eV Total energy + Delta-G solvation = -3900.699978 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.01888 -39.52057 -38.13177 -37.28743 -36.91929 -36.54606 -35.48608 -33.67163 -32.28005 -31.97088 -30.12296 -28.86240 -28.29962 -24.29023 -23.67988 -23.33233 -22.30616 -20.19418 -20.05306 -18.92425 -18.89427 -17.92454 -17.30946 -17.24731 -16.88241 -16.72922 -16.23066 -15.62415 -15.46139 -14.92549 -14.73361 -14.45867 -14.37062 -14.19912 -14.16430 -13.96080 -13.78042 -13.59424 -13.35696 -13.27884 -13.17182 -13.15071 -13.07285 -13.00924 -12.86915 -12.79398 -12.57624 -12.35354 -12.18458 -12.03642 -11.88324 -11.73327 -11.46597 -11.26154 -10.76586 -10.33929 -10.01941 -8.82336 -8.24301 -6.88953 -0.95636 -0.15283 0.32313 1.00841 1.45444 1.52584 1.59223 1.95156 2.12014 2.18575 2.36323 2.36826 2.49433 2.74288 2.91499 2.94457 3.19174 3.46381 3.59785 3.81993 3.98156 3.99337 4.00071 4.13477 4.35200 4.42109 4.46747 4.55003 4.66491 4.73092 4.74033 4.99255 4.99899 5.08391 5.13062 5.17753 5.30079 5.40637 5.49347 5.60712 5.70886 5.89776 6.13766 6.56538 6.79900 6.97522 7.24597 7.52924 8.16299 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003526 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.346698 B = 7938.662470 C = 8793.560820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.152 3.848 3 H 0.103 0.897 4 C -0.596 4.596 5 S 2.480 3.520 6 O -0.969 6.969 7 O -0.969 6.969 8 C -0.667 4.667 9 C -0.047 4.047 10 C -0.146 4.146 11 C -0.066 4.066 12 C -0.142 4.142 13 C -0.043 4.043 14 N -0.743 5.743 15 C 0.454 3.546 16 C -0.499 4.499 17 H 0.119 0.881 18 C 0.074 3.926 19 N -0.770 5.770 20 Si 0.951 3.049 21 H -0.242 1.242 22 H -0.249 1.249 23 H -0.291 1.291 24 C -0.310 4.310 25 C 0.309 3.691 26 N -0.552 5.552 27 C 0.353 3.647 28 N -0.569 5.569 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.164 0.836 33 H 0.194 0.806 34 H 0.137 0.863 35 H 0.154 0.846 36 H 0.163 0.837 37 H 0.162 0.838 38 H 0.150 0.850 39 H 0.392 0.608 40 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.901 -1.345 -26.075 26.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.047 3.953 3 H 0.121 0.879 4 C -0.728 4.728 5 S 2.666 3.334 6 O -0.966 6.966 7 O -0.966 6.966 8 C -0.755 4.755 9 C -0.066 4.066 10 C -0.165 4.165 11 C -0.083 4.083 12 C -0.161 4.161 13 C -0.061 4.061 14 N -0.371 5.371 15 C 0.338 3.662 16 C -0.532 4.532 17 H 0.136 0.864 18 C -0.152 4.152 19 N -0.392 5.392 20 Si 0.773 3.227 21 H -0.164 1.164 22 H -0.173 1.173 23 H -0.217 1.217 24 C -0.331 4.331 25 C 0.003 3.997 26 N -0.236 5.236 27 C 0.046 3.954 28 N -0.252 5.252 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.182 0.818 33 H 0.212 0.788 34 H 0.155 0.845 35 H 0.172 0.828 36 H 0.181 0.819 37 H 0.179 0.821 38 H 0.168 0.832 39 H 0.228 0.772 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.019 -1.804 -24.002 24.069 hybrid contribution -0.362 -0.051 0.037 0.367 sum -0.381 -1.855 -23.965 24.040 Atomic orbital electron populations 1.22063 0.92110 1.02832 1.03603 1.20816 0.97602 0.96744 0.80163 0.87931 1.30575 1.21045 1.13296 1.07927 1.05604 0.79466 0.74053 0.74302 1.93514 1.78745 1.38352 1.86018 1.93567 1.78766 1.69111 1.55115 1.30406 1.19970 1.06358 1.18776 1.21213 0.93159 0.92253 0.99987 1.21678 1.00461 1.01864 0.92498 1.21955 0.92878 0.94559 0.98952 1.21726 1.00071 0.95317 0.98974 1.21292 0.92809 1.00837 0.91203 1.45639 1.69386 1.13471 1.08596 1.17046 0.77667 0.90430 0.81081 1.19378 1.28957 0.91847 1.12985 0.86382 1.26408 0.93140 1.03683 0.92011 1.69533 1.13870 1.39405 1.16346 0.85565 0.80424 0.77982 0.78751 1.16421 1.17300 1.21711 1.12835 1.45973 0.82552 0.91714 1.25491 0.89911 0.92103 0.92179 1.81006 1.20404 1.12716 1.09521 1.24658 0.88548 0.91195 0.91003 1.80912 1.20801 1.10723 1.12803 0.92482 0.88643 0.92197 0.81771 0.78812 0.84487 0.82850 0.81919 0.82053 0.83187 0.77229 0.89391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.44 71.98 0.68 -2.69 16 2 C 0.15 3.96 2.48 44.99 0.11 4.07 16 3 H 0.10 2.70 6.65 -2.39 -0.02 2.69 16 4 C -0.60 -10.51 5.52 71.98 0.40 -10.11 16 5 S 2.48 65.39 4.94 -56.49 -0.28 65.11 16 6 O -0.97 -30.82 17.12 -127.65 -2.19 -33.00 16 7 O -0.97 -34.23 15.79 -127.65 -2.02 -36.24 16 8 C -0.67 -14.25 5.66 22.27 0.13 -14.12 16 9 C -0.05 -0.95 9.47 22.27 0.21 -0.74 16 10 C -0.15 -2.15 10.05 22.27 0.22 -1.92 16 11 C -0.07 -0.74 10.05 22.27 0.22 -0.52 16 12 C -0.14 -1.78 10.05 22.27 0.22 -1.56 16 13 C -0.04 -0.74 9.47 22.27 0.21 -0.53 16 14 N -0.74 -26.64 4.31 -318.16 -1.37 -28.01 16 15 C 0.45 19.94 6.10 39.03 0.24 20.18 16 16 C -0.50 -21.29 6.97 23.08 0.16 -21.13 16 17 H 0.12 4.58 7.00 -2.91 -0.02 4.56 16 18 C 0.07 3.20 4.15 85.55 0.36 3.56 16 19 N -0.77 -35.76 11.50 21.98 0.25 -35.51 16 20 Si 0.95 35.21 29.60 68.60 2.03 37.24 16 21 H -0.24 -8.40 7.11 99.48 0.71 -7.69 16 22 H -0.25 -8.31 7.11 99.48 0.71 -7.61 16 23 H -0.29 -12.11 7.11 99.48 0.71 -11.41 16 24 C -0.31 -15.42 5.39 -20.07 -0.11 -15.53 16 25 C 0.31 15.43 14.11 88.33 1.25 16.68 16 26 N -0.55 -27.83 18.54 19.01 0.35 -27.48 16 27 C 0.35 18.80 11.96 88.33 1.06 19.86 16 28 N -0.57 -31.15 18.54 19.00 0.35 -30.80 16 29 H 0.06 1.68 7.75 -2.39 -0.02 1.66 16 30 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.16 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.19 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.14 2.81 7.57 -2.91 -0.02 2.79 16 35 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 38 H 0.15 2.24 7.57 -2.91 -0.02 2.22 16 39 H 0.39 14.28 6.64 -92.71 -0.62 13.67 16 40 H 0.29 12.93 8.29 -92.71 -0.77 12.16 16 Total: -1.00 -73.60 370.74 2.98 -70.62 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.49 Total: 22.59 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: 5.36 Total: -4.52 kcal Atomic # 7 Polarization: -121.38 SS G_CDS: -0.41 Total: -121.80 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -4.20 Total: -69.25 kcal Atomic # 14 Polarization: 35.21 SS G_CDS: 2.03 Total: 37.24 kcal Atomic # 16 Polarization: 65.39 SS G_CDS: -0.28 Total: 65.11 kcal Total: -73.60 2.98 -70.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255802525.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.825 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds