Wall clock time and date at job start Wed Apr 1 2020 02:49:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 120.00244 * 2 1 4 4 C 1.46965 * 120.00105 * 180.02562 * 2 1 3 5 5 N 1.30485 * 124.73872 * 359.97438 * 4 2 1 6 6 C 1.30190 * 117.39316 * 180.02562 * 5 4 2 7 7 C 1.37344 * 114.01514 * 359.97438 * 6 5 4 8 8 C 1.47248 * 126.15665 * 179.97438 * 7 6 5 9 9 O 1.21609 * 119.99546 * 352.36664 * 8 7 6 10 10 N 1.34774 * 119.99929 * 172.36346 * 8 7 6 11 11 C 1.46493 * 120.00132 * 2.20300 * 10 8 7 12 12 C 1.50698 * 109.47081 * 82.37523 * 11 10 8 13 13 H 1.07993 * 120.00487 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99888 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00081 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99765 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47281 * 89.99820 * 16 14 12 18 18 H 1.48504 * 109.46792 * 209.99602 * 16 14 12 19 19 H 1.48499 * 109.47204 * 329.99704 * 16 14 12 20 20 C 1.46500 * 119.99622 * 182.20260 * 10 8 7 21 21 C 1.50699 * 109.47341 * 90.00060 * 20 10 8 22 22 C 1.38675 * 120.41755 * 269.71892 * 21 20 10 23 23 C 1.38626 * 118.41941 * 179.78307 * 22 21 20 24 24 C 1.38224 * 119.16042 * 0.51142 * 23 22 21 25 25 N 1.31853 * 120.76518 * 359.73085 * 24 23 22 26 26 C 1.31890 * 121.72313 * 359.97438 * 25 24 23 27 27 S 1.70924 * 124.74575 * 180.02562 * 4 2 1 28 28 H 1.08993 * 109.46833 * 269.99699 * 1 2 3 29 29 H 1.08997 * 109.46640 * 29.99650 * 1 2 3 30 30 H 1.09002 * 109.47273 * 149.99384 * 1 2 3 31 31 H 1.07999 * 122.98984 * 179.73000 * 6 5 4 32 32 H 1.09007 * 109.47191 * 202.37286 * 11 10 8 33 33 H 1.08997 * 109.47217 * 322.37217 * 11 10 8 34 34 H 0.97000 * 119.99665 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.46913 * 210.00430 * 20 10 8 36 36 H 1.09003 * 109.47265 * 329.99922 * 20 10 8 37 37 H 1.08000 * 120.79134 * 0.02750 * 22 21 20 38 38 H 1.07996 * 120.41819 * 180.22390 * 23 22 21 39 39 H 1.08005 * 119.61749 * 179.74754 * 24 23 22 40 40 H 1.08004 * 119.61476 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2418 -1.2727 -0.0006 5 7 1.6850 -2.4528 -0.0006 6 6 2.4748 -3.4878 -0.0006 7 6 3.8112 -3.1711 -0.0012 8 6 4.9307 -4.1276 -0.0008 9 8 4.7148 -5.3161 0.1400 10 7 6.1945 -3.6860 -0.1565 11 6 6.4589 -2.2502 -0.2777 12 6 6.5052 -1.6303 1.0951 13 1 6.3524 -2.2442 1.9703 14 6 6.7425 -0.2791 1.2337 15 7 6.7824 0.2620 2.4317 16 14 7.0061 0.7830 -0.2802 17 1 5.6996 1.3129 -0.7467 18 1 7.9063 1.9142 0.0595 19 1 7.6219 -0.0337 -1.3568 20 6 7.3037 -4.6418 -0.2045 21 6 7.5428 -5.0626 -1.6316 22 6 6.8865 -6.1651 -2.1579 23 6 7.1339 -6.5126 -3.4769 24 6 8.0282 -5.7606 -4.2151 25 7 8.6382 -4.7212 -3.6802 26 6 8.4228 -4.3581 -2.4307 27 16 3.9452 -1.4141 0.0000 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 2.1114 -4.5048 0.0036 32 1 7.4156 -2.0979 -0.7776 33 1 5.6657 -1.7826 -0.8610 34 1 6.9498 1.2125 2.5292 35 1 8.2044 -4.1732 0.1920 36 1 7.0553 -5.5171 0.3957 37 1 6.1960 -6.7369 -1.5557 38 1 6.6376 -7.3631 -3.9205 39 1 8.2296 -6.0272 -5.2422 40 1 8.9407 -3.5006 -2.0272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353916618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:54 Heat of formation + Delta-G solvation = 22.370123 kcal Electronic energy + Delta-G solvation = -27566.287640 eV Core-core repulsion = 23666.809061 eV Total energy + Delta-G solvation = -3899.478578 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.30917 -39.62105 -39.14785 -38.18706 -35.64974 -33.46449 -32.47848 -31.70616 -31.00214 -29.24963 -28.58927 -26.84034 -25.49001 -23.60520 -22.97432 -22.48822 -21.51167 -20.23906 -18.14037 -17.89633 -17.54471 -16.98722 -16.43870 -16.33937 -15.83680 -15.48017 -15.18704 -15.08850 -14.65064 -14.54931 -14.31605 -13.93769 -13.67014 -13.47876 -13.26561 -13.04915 -12.86898 -12.81847 -12.52123 -12.17484 -12.11368 -12.00512 -11.55290 -11.34658 -11.02370 -10.72269 -10.58448 -10.18328 -10.06077 -9.82024 -9.59986 -9.44523 -9.34419 -8.98743 -8.93274 -8.82068 -8.54604 -8.13321 -6.61873 -4.60062 0.26385 1.09654 1.34032 1.76298 2.09503 2.27134 2.99782 3.04053 3.11865 3.14487 3.40378 3.64752 3.95203 3.96559 4.11314 4.47851 4.69330 4.81951 4.90111 4.93008 5.00054 5.10201 5.14669 5.25825 5.45396 5.52274 5.64988 5.66812 5.69863 5.83044 5.86699 5.93583 6.01575 6.14654 6.19047 6.38199 6.49444 6.73690 6.84219 6.90786 7.45840 7.65008 7.93533 7.99580 8.07129 8.41018 8.50829 8.90286 10.47405 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.004726 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.274850 B = 5923.805693 C = 7338.396889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.436 3.564 3 O -0.453 6.453 4 C -0.173 4.173 5 N -0.450 5.450 6 C 0.094 3.906 7 C -0.313 4.313 8 C 0.602 3.398 9 O -0.549 6.549 10 N -0.584 5.584 11 C 0.199 3.801 12 C -0.537 4.537 13 H 0.092 0.908 14 C 0.092 3.908 15 N -0.856 5.856 16 Si 0.838 3.162 17 H -0.254 1.254 18 H -0.269 1.269 19 H -0.255 1.255 20 C 0.163 3.837 21 C -0.151 4.151 22 C -0.053 4.053 23 C -0.179 4.179 24 C 0.093 3.907 25 N -0.489 5.489 26 C 0.111 3.889 27 S 0.444 5.556 28 H 0.097 0.903 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.181 0.819 32 H 0.057 0.943 33 H 0.024 0.976 34 H 0.277 0.723 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.140 0.860 38 H 0.132 0.868 39 H 0.152 0.848 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.971 -6.753 -8.238 11.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.310 3.690 3 O -0.327 6.327 4 C -0.436 4.436 5 N -0.169 5.169 6 C -0.073 4.073 7 C -0.440 4.440 8 C 0.390 3.610 9 O -0.430 6.430 10 N -0.314 5.314 11 C 0.075 3.925 12 C -0.580 4.580 13 H 0.110 0.890 14 C -0.118 4.118 15 N -0.489 5.489 16 Si 0.661 3.339 17 H -0.178 1.178 18 H -0.194 1.194 19 H -0.179 1.179 20 C 0.040 3.960 21 C -0.155 4.155 22 C -0.080 4.080 23 C -0.199 4.199 24 C -0.064 4.064 25 N -0.198 5.198 26 C -0.046 4.046 27 S 0.712 5.288 28 H 0.115 0.885 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.198 0.802 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.158 0.842 38 H 0.150 0.850 39 H 0.169 0.831 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.982 -5.196 -8.568 10.214 hybrid contribution -0.863 -0.776 0.000 1.161 sum -2.845 -5.971 -8.568 10.824 Atomic orbital electron populations 1.22032 0.92423 1.04739 1.04774 1.21615 0.91806 0.85036 0.70494 1.90602 1.72282 1.32922 1.36862 1.28494 1.04184 0.97577 1.13325 1.66192 1.39540 0.97062 1.14115 1.22125 0.86796 0.98738 0.99627 1.26760 0.99108 0.99064 1.19097 1.16819 0.81594 0.86533 0.76076 1.90696 1.84380 1.15937 1.51989 1.47739 1.05043 1.08193 1.70376 1.20135 0.97069 0.76683 0.98575 1.21476 1.50096 0.94631 0.91836 0.89013 1.24855 0.93377 0.97472 0.96065 1.69831 1.43768 1.13363 1.21937 0.87331 0.80836 0.81923 0.83770 1.17822 1.19396 1.17867 1.20224 0.90580 0.94016 0.91164 1.21401 0.98434 0.96727 0.98891 1.21697 0.96103 0.95169 0.95014 1.22141 1.00484 1.01888 0.95344 1.22734 0.92811 0.91034 0.99853 1.67707 1.24116 1.15102 1.12828 1.22778 0.94800 0.97886 0.89113 1.86133 0.95293 0.96825 1.50550 0.88495 0.89762 0.88826 0.80236 0.92550 0.95914 0.91290 0.88419 0.88783 0.84212 0.85014 0.83110 0.82650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 10.12 36.00 0.36 -1.86 16 2 C 0.44 7.48 7.25 -30.78 -0.22 7.26 16 3 O -0.45 -9.03 17.60 5.56 0.10 -8.93 16 4 C -0.17 -3.23 7.15 -14.59 -0.10 -3.33 16 5 N -0.45 -8.03 10.03 -12.21 -0.12 -8.16 16 6 C 0.09 1.68 11.19 -18.57 -0.21 1.47 16 7 C -0.31 -6.06 6.31 -36.25 -0.23 -6.29 16 8 C 0.60 11.76 7.59 -12.60 -0.10 11.66 16 9 O -0.55 -11.03 16.21 5.27 0.09 -10.95 16 10 N -0.58 -10.77 2.46 -177.78 -0.44 -11.21 16 11 C 0.20 3.94 3.81 -5.20 -0.02 3.92 16 12 C -0.54 -12.43 7.59 -34.44 -0.26 -12.69 16 13 H 0.09 2.39 8.06 -52.49 -0.42 1.97 16 14 C 0.09 2.23 5.12 -17.82 -0.09 2.14 16 15 N -0.86 -22.43 13.96 55.43 0.77 -21.65 16 16 Si 0.84 17.89 26.82 -169.99 -4.56 13.33 16 17 H -0.25 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 19 H -0.25 -5.03 6.54 56.52 0.37 -4.66 16 20 C 0.16 2.51 5.54 -5.19 -0.03 2.48 16 21 C -0.15 -2.17 5.48 -104.49 -0.57 -2.75 16 22 C -0.05 -0.72 9.86 -39.28 -0.39 -1.10 16 23 C -0.18 -2.07 10.11 -39.44 -0.40 -2.47 16 24 C 0.09 1.13 11.18 -17.55 -0.20 0.93 16 25 N -0.49 -7.10 10.36 -13.25 -0.14 -7.23 16 26 C 0.11 1.60 10.86 -17.55 -0.19 1.41 16 27 S 0.44 8.94 15.30 -107.50 -1.64 7.30 16 28 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 29 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.09 1.08 7.84 -51.93 -0.41 0.67 16 31 H 0.18 2.80 8.06 -52.49 -0.42 2.38 16 32 H 0.06 1.06 7.07 -51.93 -0.37 0.69 16 33 H 0.02 0.48 3.94 -22.97 -0.09 0.39 16 34 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 35 H 0.10 1.38 8.02 -51.93 -0.42 0.97 16 36 H 0.09 1.43 7.34 -51.93 -0.38 1.05 16 37 H 0.14 1.88 7.81 -52.49 -0.41 1.47 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 39 H 0.15 1.36 8.06 -52.48 -0.42 0.94 16 40 H 0.16 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 359.57 15.07 5.42 5.42 Total: -1.00 -28.52 359.57 -7.37 -35.89 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -4.20 Total: 5.43 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -2.64 Total: 0.78 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.08 Total: -48.25 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.18 Total: -19.88 kcal Atomic # 14 Polarization: 17.89 SS G_CDS: -4.56 Total: 13.33 kcal Atomic # 16 Polarization: 8.94 SS G_CDS: -1.64 Total: 7.30 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.52 -7.37 -35.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353916618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.256 kcal (2) G-P(sol) polarization free energy of solvation -28.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds