Wall clock time and date at job start Wed Apr 1 2020 02:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21272 * 120.00244 * 2 1 4 4 C 1.46965 * 120.00105 * 180.02562 * 2 1 3 5 5 N 1.30485 * 124.73872 * 359.97438 * 4 2 1 6 6 C 1.30190 * 117.39316 * 180.02562 * 5 4 2 7 7 C 1.37344 * 114.01514 * 359.97438 * 6 5 4 8 8 C 1.47248 * 126.15665 * 179.97438 * 7 6 5 9 9 O 1.21609 * 119.99546 * 352.36664 * 8 7 6 10 10 N 1.34774 * 119.99929 * 172.36346 * 8 7 6 11 11 C 1.46493 * 120.00132 * 2.20300 * 10 8 7 12 12 C 1.50698 * 109.47081 * 82.37523 * 11 10 8 13 13 H 1.07993 * 120.00487 * 359.97438 * 12 11 10 14 14 C 1.37885 * 119.99888 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00081 * 179.97438 * 14 12 11 16 16 Si 1.86800 * 119.99765 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47281 * 89.99820 * 16 14 12 18 18 H 1.48504 * 109.46792 * 209.99602 * 16 14 12 19 19 H 1.48499 * 109.47204 * 329.99704 * 16 14 12 20 20 C 1.46500 * 119.99622 * 182.20260 * 10 8 7 21 21 C 1.50699 * 109.47341 * 90.00060 * 20 10 8 22 22 C 1.38675 * 120.41755 * 269.71892 * 21 20 10 23 23 C 1.38626 * 118.41941 * 179.78307 * 22 21 20 24 24 C 1.38224 * 119.16042 * 0.51142 * 23 22 21 25 25 N 1.31853 * 120.76518 * 359.73085 * 24 23 22 26 26 C 1.31890 * 121.72313 * 359.97438 * 25 24 23 27 27 S 1.70924 * 124.74575 * 180.02562 * 4 2 1 28 28 H 1.08993 * 109.46833 * 269.99699 * 1 2 3 29 29 H 1.08997 * 109.46640 * 29.99650 * 1 2 3 30 30 H 1.09002 * 109.47273 * 149.99384 * 1 2 3 31 31 H 1.07999 * 122.98984 * 179.73000 * 6 5 4 32 32 H 1.09007 * 109.47191 * 202.37286 * 11 10 8 33 33 H 1.08997 * 109.47217 * 322.37217 * 11 10 8 34 34 H 0.97000 * 119.99665 * 179.97438 * 15 14 12 35 35 H 1.08999 * 109.46913 * 210.00430 * 20 10 8 36 36 H 1.09003 * 109.47265 * 329.99922 * 20 10 8 37 37 H 1.08000 * 120.79134 * 0.02750 * 22 21 20 38 38 H 1.07996 * 120.41819 * 180.22390 * 23 22 21 39 39 H 1.08005 * 119.61749 * 179.74754 * 24 23 22 40 40 H 1.08004 * 119.61476 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0502 0.0000 4 6 2.2418 -1.2727 -0.0006 5 7 1.6850 -2.4528 -0.0006 6 6 2.4748 -3.4878 -0.0006 7 6 3.8112 -3.1711 -0.0012 8 6 4.9307 -4.1276 -0.0008 9 8 4.7148 -5.3161 0.1400 10 7 6.1945 -3.6860 -0.1565 11 6 6.4589 -2.2502 -0.2777 12 6 6.5052 -1.6303 1.0951 13 1 6.3524 -2.2442 1.9703 14 6 6.7425 -0.2791 1.2337 15 7 6.7824 0.2620 2.4317 16 14 7.0061 0.7830 -0.2802 17 1 5.6996 1.3129 -0.7467 18 1 7.9063 1.9142 0.0595 19 1 7.6219 -0.0337 -1.3568 20 6 7.3037 -4.6418 -0.2045 21 6 7.5428 -5.0626 -1.6316 22 6 6.8865 -6.1651 -2.1579 23 6 7.1339 -6.5126 -3.4769 24 6 8.0282 -5.7606 -4.2151 25 7 8.6382 -4.7212 -3.6802 26 6 8.4228 -4.3581 -2.4307 27 16 3.9452 -1.4141 0.0000 28 1 -0.3633 -0.0001 1.0276 29 1 -0.3632 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 2.1114 -4.5048 0.0036 32 1 7.4156 -2.0979 -0.7776 33 1 5.6657 -1.7826 -0.8610 34 1 6.9498 1.2125 2.5292 35 1 8.2044 -4.1732 0.1920 36 1 7.0553 -5.5171 0.3957 37 1 6.1960 -6.7369 -1.5557 38 1 6.6376 -7.3631 -3.9205 39 1 8.2296 -6.0272 -5.2422 40 1 8.9407 -3.5006 -2.0272 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353916618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:53 Heat of formation + Delta-G solvation = 4.744684 kcal Electronic energy + Delta-G solvation = -27567.051936 eV Core-core repulsion = 23666.809061 eV Total energy + Delta-G solvation = -3900.242875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52781 -41.02033 -40.52029 -39.65641 -37.16869 -35.03187 -33.83544 -32.81177 -32.29364 -30.50916 -30.21826 -28.15906 -26.85999 -24.95517 -24.33859 -23.72325 -22.84287 -21.66289 -19.57424 -19.39006 -19.32872 -18.04469 -17.78638 -17.77404 -17.04896 -16.84070 -16.54640 -16.46259 -16.20832 -15.97264 -15.66384 -15.34449 -14.96996 -14.76666 -14.68116 -14.46832 -14.25837 -14.05212 -13.91162 -13.46419 -13.17488 -13.10429 -12.91221 -12.82427 -12.52088 -12.26648 -12.19201 -11.86817 -11.62802 -11.21428 -11.10068 -10.75971 -10.49932 -10.44644 -10.39584 -10.13266 -10.00541 -9.62841 -8.46769 -6.48738 -1.23288 0.07824 0.21742 0.32183 0.68566 0.74695 1.29778 1.33993 1.38571 1.66030 2.00383 2.15039 2.19516 2.70696 2.88877 2.91482 3.43445 3.52053 3.60221 3.82536 3.92105 4.05647 4.07782 4.09099 4.19791 4.28144 4.44880 4.56538 4.59959 4.63579 4.67032 4.70557 4.85840 4.97729 5.15101 5.15645 5.19777 5.32129 5.39760 5.75910 5.96817 6.09752 6.26174 6.51882 6.55332 6.95253 6.99478 7.09003 8.66806 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010543 B = 0.004726 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.274850 B = 5923.805693 C = 7338.396889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.433 3.567 3 O -0.485 6.485 4 C -0.160 4.160 5 N -0.437 5.437 6 C 0.102 3.898 7 C -0.317 4.317 8 C 0.596 3.404 9 O -0.558 6.558 10 N -0.583 5.583 11 C 0.205 3.795 12 C -0.531 4.531 13 H 0.051 0.949 14 C 0.057 3.943 15 N -0.909 5.909 16 Si 0.875 3.125 17 H -0.258 1.258 18 H -0.271 1.271 19 H -0.226 1.226 20 C 0.162 3.838 21 C -0.160 4.160 22 C -0.063 4.063 23 C -0.170 4.170 24 C 0.092 3.908 25 N -0.510 5.510 26 C 0.100 3.900 27 S 0.384 5.616 28 H 0.117 0.883 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.207 0.793 32 H 0.072 0.928 33 H 0.029 0.971 34 H 0.275 0.725 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.184 0.816 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -8.002 -10.641 14.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.309 3.691 3 O -0.360 6.360 4 C -0.424 4.424 5 N -0.156 5.156 6 C -0.064 4.064 7 C -0.444 4.444 8 C 0.384 3.616 9 O -0.439 6.439 10 N -0.312 5.312 11 C 0.081 3.919 12 C -0.573 4.573 13 H 0.069 0.931 14 C -0.148 4.148 15 N -0.546 5.546 16 Si 0.697 3.303 17 H -0.183 1.183 18 H -0.196 1.196 19 H -0.149 1.149 20 C 0.040 3.960 21 C -0.163 4.163 22 C -0.090 4.090 23 C -0.189 4.189 24 C -0.065 4.065 25 N -0.219 5.219 26 C -0.056 4.056 27 S 0.650 5.350 28 H 0.135 0.865 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.223 0.777 32 H 0.090 0.910 33 H 0.046 0.954 34 H 0.084 0.916 35 H 0.123 0.877 36 H 0.111 0.889 37 H 0.155 0.845 38 H 0.182 0.818 39 H 0.201 0.799 40 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.471 -6.493 -10.980 13.220 hybrid contribution -0.594 -0.554 0.694 1.069 sum -4.065 -7.047 -10.286 13.114 Atomic orbital electron populations 1.22087 0.87924 1.06448 1.06432 1.22391 0.93932 0.83660 0.69089 1.90603 1.73359 1.33693 1.38350 1.28909 1.03064 0.98810 1.11649 1.66282 1.38955 0.96746 1.13600 1.22602 0.86168 0.99793 0.97875 1.26868 0.99870 0.98241 1.19384 1.16919 0.81994 0.86496 0.76150 1.90682 1.84569 1.16061 1.52634 1.47790 1.05550 1.08084 1.69780 1.19982 0.97871 0.77342 0.96698 1.21353 1.49816 0.94087 0.92076 0.93063 1.25374 0.93179 0.98474 0.97791 1.69944 1.47104 1.13502 1.24012 0.86717 0.80610 0.80922 0.82046 1.18285 1.19621 1.14873 1.20347 0.89845 0.93377 0.92440 1.21227 0.99421 0.97627 0.98060 1.21810 0.96114 0.94986 0.96061 1.22470 0.99772 1.02344 0.94318 1.23330 0.91954 0.90018 1.01222 1.67739 1.25037 1.16345 1.12804 1.22850 0.95110 0.98261 0.89415 1.86300 0.97545 0.98306 1.52803 0.86512 0.87537 0.87638 0.77654 0.91047 0.95426 0.91574 0.87714 0.88894 0.84489 0.81781 0.79885 0.82358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.61 10.12 71.24 0.72 -2.89 16 2 C 0.43 14.14 7.25 27.97 0.20 14.35 16 3 O -0.48 -19.02 17.60 -3.00 -0.05 -19.07 16 4 C -0.16 -5.75 7.15 87.18 0.62 -5.13 16 5 N -0.44 -14.63 10.03 -192.54 -1.93 -16.56 16 6 C 0.10 3.42 11.19 84.73 0.95 4.37 16 7 C -0.32 -12.08 6.31 24.43 0.15 -11.92 16 8 C 0.60 23.11 7.59 86.61 0.66 23.77 16 9 O -0.56 -21.98 16.21 -4.06 -0.07 -22.04 16 10 N -0.58 -21.53 2.46 -834.63 -2.06 -23.59 16 11 C 0.21 8.16 3.81 85.63 0.33 8.49 16 12 C -0.53 -25.47 7.59 25.60 0.19 -25.27 16 13 H 0.05 2.83 8.06 -2.91 -0.02 2.81 16 14 C 0.06 2.82 5.12 84.66 0.43 3.25 16 15 N -0.91 -49.99 13.96 21.45 0.30 -49.69 16 16 Si 0.88 37.01 26.82 68.60 1.84 38.85 16 17 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 18 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 19 H -0.23 -8.42 6.54 99.48 0.65 -7.77 16 20 C 0.16 4.98 5.54 85.63 0.47 5.45 16 21 C -0.16 -4.46 5.48 -19.78 -0.11 -4.57 16 22 C -0.06 -1.60 9.86 22.47 0.22 -1.37 16 23 C -0.17 -3.43 10.11 22.36 0.23 -3.21 16 24 C 0.09 1.96 11.18 84.69 0.95 2.90 16 25 N -0.51 -13.87 10.36 -195.84 -2.03 -15.90 16 26 C 0.10 2.78 10.86 84.67 0.92 3.70 16 27 S 0.38 15.52 15.30 -56.49 -0.86 14.66 16 28 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.10 2.02 7.84 -2.39 -0.02 2.00 16 31 H 0.21 5.82 8.06 -2.91 -0.02 5.79 16 32 H 0.07 2.64 7.07 -2.38 -0.02 2.62 16 33 H 0.03 1.16 3.94 -20.81 -0.08 1.07 16 34 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 35 H 0.10 3.00 8.02 -2.39 -0.02 2.98 16 36 H 0.09 2.84 7.34 -2.39 -0.02 2.83 16 37 H 0.14 3.50 7.81 -2.91 -0.02 3.48 16 38 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.18 2.59 8.06 -2.91 -0.02 2.56 16 40 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -63.46 359.57 3.04 -60.42 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.96 Total: 21.01 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: 6.94 Total: 11.92 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -5.72 Total: -105.74 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -0.12 Total: -41.11 kcal Atomic # 14 Polarization: 37.01 SS G_CDS: 1.84 Total: 38.85 kcal Atomic # 16 Polarization: 15.52 SS G_CDS: -0.86 Total: 14.66 kcal Total: -63.46 3.04 -60.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353916618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.166 kcal (2) G-P(sol) polarization free energy of solvation -63.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds