Wall clock time and date at job start Wed Apr 1 2020 02:55:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35508 * 117.00414 * 2 1 4 4 C 1.39444 * 120.47104 * 180.02562 * 3 2 1 5 5 C 1.38209 * 118.48843 * 179.97438 * 4 3 2 6 6 N 1.32454 * 119.25881 * 359.97438 * 5 4 3 7 7 C 1.32393 * 120.89541 * 0.02562 * 6 5 4 8 8 N 1.38833 * 119.17640 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00051 * 179.97438 * 8 7 6 10 10 C 1.34785 * 120.00041 * 0.02562 * 8 7 6 11 11 O 1.21541 * 119.99702 * 354.73279 * 10 8 7 12 12 C 1.47806 * 119.99892 * 174.73841 * 10 8 7 13 13 C 1.39702 * 120.10607 * 335.42008 * 12 10 8 14 14 C 1.38033 * 120.03810 * 179.97438 * 13 12 10 15 15 C 1.38187 * 120.24571 * 359.79079 * 14 13 12 16 16 C 1.39183 * 120.20352 * 0.46636 * 15 14 13 17 17 S 1.76202 * 120.01457 * 179.78848 * 16 15 14 18 18 C 1.76197 * 100.00163 * 265.70962 * 17 16 15 19 19 H 1.08003 * 119.99640 * 5.21912 * 18 17 16 20 20 C 1.38724 * 120.00178 * 185.21062 * 18 17 16 21 21 N 1.31625 * 120.00230 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47247 * 89.99672 * 22 20 18 24 24 H 1.48496 * 109.47310 * 209.99824 * 22 20 18 25 25 H 1.48502 * 109.46815 * 329.99799 * 22 20 18 26 26 C 1.38868 * 119.96459 * 359.51517 * 16 15 14 27 27 N 1.32410 * 121.64720 * 0.27449 * 7 6 5 28 28 H 1.09002 * 109.47216 * 60.00185 * 1 2 3 29 29 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47051 * 300.00435 * 1 2 3 31 31 H 1.07995 * 120.75794 * 359.97233 * 4 3 2 32 32 H 1.08000 * 120.37396 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47308 * 275.81550 * 9 8 7 34 34 H 1.09000 * 109.47400 * 35.82263 * 9 8 7 35 35 H 1.09004 * 109.46894 * 155.82190 * 9 8 7 36 36 H 1.08007 * 119.98063 * 359.97438 * 13 12 10 37 37 H 1.07995 * 119.87489 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.89579 * 180.25859 * 15 14 13 39 39 H 0.97000 * 120.00536 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.12386 * 180.23297 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4361 1.2917 -0.0005 5 6 4.0207 2.5440 -0.0011 6 7 3.2474 3.6194 -0.0016 7 6 1.9281 3.5081 -0.0010 8 7 1.1518 4.6590 -0.0010 9 6 -0.3096 4.5568 -0.0010 10 6 1.7426 5.8705 -0.0021 11 8 2.9512 5.9572 0.0936 12 6 0.9208 7.0934 -0.1195 13 6 -0.3368 7.0371 -0.7252 14 6 -1.1033 8.1799 -0.8336 15 6 -0.6336 9.3824 -0.3407 16 6 0.6201 9.4512 0.2598 17 16 1.2164 10.9883 0.8815 18 6 2.1469 11.5405 -0.5090 19 1 2.1297 10.9753 -1.4292 20 6 2.9015 12.7013 -0.4220 21 7 3.5963 13.1142 -1.4610 22 14 2.9317 13.6786 1.1697 23 1 4.0393 13.1899 2.0297 24 1 3.1402 15.1167 0.8637 25 1 1.6396 13.5061 1.8810 26 6 1.3983 8.3067 0.3738 27 7 1.3307 2.3265 0.0054 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0435 0.3987 -0.0005 32 1 5.0960 2.6448 -0.0019 33 1 -0.6648 4.4276 -1.0234 34 1 -0.6140 3.7003 0.6004 35 1 -0.7374 5.4668 0.4199 36 1 -0.7095 6.0988 -1.1088 37 1 -2.0753 8.1333 -1.3019 38 1 -1.2398 10.2722 -0.4248 39 1 4.1242 13.9256 -1.4000 40 1 2.3699 8.3564 0.8427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361354182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:56 Heat of formation + Delta-G solvation = 54.475464 kcal Electronic energy + Delta-G solvation = -26429.648651 eV Core-core repulsion = 22531.562265 eV Total energy + Delta-G solvation = -3898.086386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73522 -40.34404 -38.81236 -37.86456 -36.06910 -33.36986 -32.50524 -32.12474 -30.80480 -30.49523 -28.13058 -27.23186 -25.68828 -25.24919 -23.95530 -22.84500 -22.45188 -20.55586 -18.85246 -18.34808 -17.83578 -16.90877 -16.77552 -16.68340 -16.22416 -15.89294 -15.61887 -15.18928 -14.98225 -14.85483 -14.46938 -14.20266 -14.04105 -13.81006 -13.45939 -13.33719 -12.96039 -12.76708 -12.46353 -12.42004 -12.03260 -11.61629 -11.43856 -11.21254 -11.14259 -11.10572 -10.90766 -10.64157 -10.07546 -10.00898 -9.90764 -9.31654 -9.17536 -9.08986 -8.78379 -8.61982 -8.18228 -7.15917 -6.33230 -4.09518 0.63257 0.96901 1.13455 1.51912 2.08887 2.59509 2.76344 2.90566 3.26525 3.37274 3.47360 3.65018 3.75315 3.93549 4.17109 4.25063 4.50201 4.61142 4.79104 4.83068 4.87477 4.87978 4.98633 5.04123 5.06755 5.09506 5.11436 5.18301 5.21107 5.43732 5.56282 5.70529 5.77355 5.79931 6.11176 6.16663 6.38838 6.48995 6.50826 6.72682 6.84201 6.92158 7.04325 7.90807 7.92770 8.03356 8.44905 9.10292 10.76189 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002445 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.547357 B =11448.131840 C =12368.990168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.300 6.300 3 C 0.389 3.611 4 C -0.283 4.283 5 C 0.204 3.796 6 N -0.523 5.523 7 C 0.580 3.420 8 N -0.532 5.532 9 C 0.069 3.931 10 C 0.559 3.441 11 O -0.451 6.451 12 C -0.150 4.150 13 C -0.104 4.104 14 C -0.139 4.139 15 C -0.049 4.049 16 C -0.084 4.084 17 S -0.111 6.111 18 C -0.510 4.510 19 H 0.092 0.908 20 C 0.095 3.905 21 N -0.875 5.875 22 Si 0.858 3.142 23 H -0.265 1.265 24 H -0.273 1.273 25 H -0.239 1.239 26 C -0.014 4.014 27 N -0.604 5.604 28 H 0.062 0.938 29 H 0.099 0.901 30 H 0.062 0.938 31 H 0.152 0.848 32 H 0.180 0.820 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.139 0.861 37 H 0.128 0.872 38 H 0.134 0.866 39 H 0.272 0.728 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.711 -24.792 2.967 26.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.204 6.204 3 C 0.201 3.799 4 C -0.308 4.308 5 C 0.039 3.961 6 N -0.247 5.247 7 C 0.226 3.774 8 N -0.261 5.261 9 C -0.073 4.073 10 C 0.348 3.652 11 O -0.318 6.318 12 C -0.155 4.155 13 C -0.122 4.122 14 C -0.159 4.159 15 C -0.069 4.069 16 C -0.195 4.195 17 S 0.123 5.877 18 C -0.656 4.656 19 H 0.110 0.890 20 C -0.114 4.114 21 N -0.511 5.511 22 Si 0.682 3.318 23 H -0.190 1.190 24 H -0.198 1.198 25 H -0.164 1.164 26 C -0.036 4.036 27 N -0.342 5.342 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.170 0.830 32 H 0.196 0.804 33 H 0.089 0.911 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.157 0.843 37 H 0.146 0.854 38 H 0.152 0.848 39 H 0.082 0.918 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -9.545 -23.393 3.984 25.578 hybrid contribution 0.516 -0.872 -0.785 1.281 sum -9.029 -24.264 3.199 26.087 Atomic orbital electron populations 1.22950 0.76684 1.03355 1.02820 1.86266 1.23427 1.23778 1.86925 1.19719 0.89274 0.83853 0.87067 1.21813 0.92506 1.01320 1.15144 1.23115 1.00758 0.85707 0.86485 1.68611 1.03222 1.33062 1.19767 1.19003 0.85545 0.84321 0.88557 1.45233 1.07886 1.02831 1.70170 1.22566 0.76904 1.04911 1.02902 1.18714 0.88017 0.81909 0.76587 1.90909 1.13431 1.85090 1.42409 1.19585 0.95978 0.92785 1.07155 1.21941 0.92971 0.99523 0.97754 1.21093 1.00437 0.92461 1.01879 1.21946 0.94815 0.97759 0.92428 1.22186 0.96426 0.98922 1.01955 1.83075 1.65101 1.13390 1.26142 1.22240 1.32500 1.13393 0.97508 0.89015 1.24746 0.93452 0.96325 0.96866 1.69924 1.28058 1.23369 1.29721 0.86738 0.81139 0.80128 0.83771 1.19018 1.19780 1.16358 1.21859 0.98721 0.89543 0.93460 1.67266 1.41630 0.97904 1.27379 0.91956 0.88244 0.91967 0.82978 0.80355 0.91053 0.89880 0.87968 0.84325 0.85409 0.84797 0.91780 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.23 10.41 101.05 1.05 1.28 16 2 O -0.30 -2.77 10.49 -18.22 -0.19 -2.96 16 3 C 0.39 4.24 7.53 -16.72 -0.13 4.11 16 4 C -0.28 -2.70 10.12 -39.14 -0.40 -3.10 16 5 C 0.20 2.24 11.29 -17.29 -0.20 2.05 16 6 N -0.52 -7.99 7.88 -13.92 -0.11 -8.10 16 7 C 0.58 8.34 8.13 -322.42 -2.62 5.72 16 8 N -0.53 -7.36 3.07 -125.91 -0.39 -7.74 16 9 C 0.07 0.63 8.34 59.85 0.50 1.13 16 10 C 0.56 9.44 7.45 -12.34 -0.09 9.35 16 11 O -0.45 -9.23 14.81 5.33 0.08 -9.15 16 12 C -0.15 -2.45 5.49 -105.00 -0.58 -3.03 16 13 C -0.10 -1.34 7.53 -39.11 -0.29 -1.63 16 14 C -0.14 -1.83 10.02 -39.68 -0.40 -2.22 16 15 C -0.05 -0.81 9.79 -39.25 -0.38 -1.20 16 16 C -0.08 -1.70 5.45 -39.00 -0.21 -1.92 16 17 S -0.11 -2.65 19.38 -107.50 -2.08 -4.73 16 18 C -0.51 -14.56 10.00 30.91 0.31 -14.25 16 19 H 0.09 2.86 8.02 -52.48 -0.42 2.44 16 20 C 0.10 2.74 5.50 -17.46 -0.10 2.64 16 21 N -0.87 -26.30 13.97 55.49 0.78 -25.52 16 22 Si 0.86 20.93 27.74 -169.99 -4.71 16.21 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.24 -5.63 6.74 56.52 0.38 -5.25 16 26 C -0.01 -0.28 9.34 -38.91 -0.36 -0.64 16 27 N -0.60 -7.32 8.16 -13.91 -0.11 -7.43 16 28 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.15 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.07 0.53 7.13 -51.93 -0.37 0.16 16 34 H 0.08 0.68 7.53 -51.93 -0.39 0.29 16 35 H 0.10 0.88 5.12 -51.93 -0.27 0.61 16 36 H 0.14 1.32 4.43 -52.48 -0.23 1.08 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 38 H 0.13 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.14 2.90 7.84 -52.49 -0.41 2.49 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -35.42 357.81 -9.45 -44.87 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.21 Total: 0.88 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -3.89 Total: -1.70 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.17 Total: -48.80 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: -0.11 Total: -12.11 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.71 Total: 16.21 kcal Atomic # 16 Polarization: -2.65 SS G_CDS: -2.08 Total: -4.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.42 -9.45 -44.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361354182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.346 kcal (2) G-P(sol) polarization free energy of solvation -35.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds