Wall clock time and date at job start Wed Apr 1 2020 02:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35508 * 117.00414 * 2 1 4 4 C 1.39444 * 120.47104 * 180.02562 * 3 2 1 5 5 C 1.38209 * 118.48843 * 179.97438 * 4 3 2 6 6 N 1.32454 * 119.25881 * 359.97438 * 5 4 3 7 7 C 1.32393 * 120.89541 * 0.02562 * 6 5 4 8 8 N 1.38833 * 119.17640 * 179.97438 * 7 6 5 9 9 C 1.46498 * 120.00051 * 179.97438 * 8 7 6 10 10 C 1.34785 * 120.00041 * 0.02562 * 8 7 6 11 11 O 1.21541 * 119.99702 * 354.73279 * 10 8 7 12 12 C 1.47806 * 119.99892 * 174.73841 * 10 8 7 13 13 C 1.39702 * 120.10607 * 335.42008 * 12 10 8 14 14 C 1.38033 * 120.03810 * 179.97438 * 13 12 10 15 15 C 1.38187 * 120.24571 * 359.79079 * 14 13 12 16 16 C 1.39183 * 120.20352 * 0.46636 * 15 14 13 17 17 S 1.76202 * 120.01457 * 179.78848 * 16 15 14 18 18 C 1.76197 * 100.00163 * 265.70962 * 17 16 15 19 19 H 1.08003 * 119.99640 * 5.21912 * 18 17 16 20 20 C 1.38724 * 120.00178 * 185.21062 * 18 17 16 21 21 N 1.31625 * 120.00230 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00136 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.47247 * 89.99672 * 22 20 18 24 24 H 1.48496 * 109.47310 * 209.99824 * 22 20 18 25 25 H 1.48502 * 109.46815 * 329.99799 * 22 20 18 26 26 C 1.38868 * 119.96459 * 359.51517 * 16 15 14 27 27 N 1.32410 * 121.64720 * 0.27449 * 7 6 5 28 28 H 1.09002 * 109.47216 * 60.00185 * 1 2 3 29 29 H 1.08997 * 109.47431 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47051 * 300.00435 * 1 2 3 31 31 H 1.07995 * 120.75794 * 359.97233 * 4 3 2 32 32 H 1.08000 * 120.37396 * 180.02562 * 5 4 3 33 33 H 1.08995 * 109.47308 * 275.81550 * 9 8 7 34 34 H 1.09000 * 109.47400 * 35.82263 * 9 8 7 35 35 H 1.09004 * 109.46894 * 155.82190 * 9 8 7 36 36 H 1.08007 * 119.98063 * 359.97438 * 13 12 10 37 37 H 1.07995 * 119.87489 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.89579 * 180.25859 * 15 14 13 39 39 H 0.97000 * 120.00536 * 180.02562 * 21 20 18 40 40 H 1.07997 * 120.12386 * 180.23297 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2073 0.0000 4 6 3.4361 1.2917 -0.0005 5 6 4.0207 2.5440 -0.0011 6 7 3.2474 3.6194 -0.0016 7 6 1.9281 3.5081 -0.0010 8 7 1.1518 4.6590 -0.0010 9 6 -0.3096 4.5568 -0.0010 10 6 1.7426 5.8705 -0.0021 11 8 2.9512 5.9572 0.0936 12 6 0.9208 7.0934 -0.1195 13 6 -0.3368 7.0371 -0.7252 14 6 -1.1033 8.1799 -0.8336 15 6 -0.6336 9.3824 -0.3407 16 6 0.6201 9.4512 0.2598 17 16 1.2164 10.9883 0.8815 18 6 2.1469 11.5405 -0.5090 19 1 2.1297 10.9753 -1.4292 20 6 2.9015 12.7013 -0.4220 21 7 3.5963 13.1142 -1.4610 22 14 2.9317 13.6786 1.1697 23 1 4.0393 13.1899 2.0297 24 1 3.1402 15.1167 0.8637 25 1 1.6396 13.5061 1.8810 26 6 1.3983 8.3067 0.3738 27 7 1.3307 2.3265 0.0054 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 4.0435 0.3987 -0.0005 32 1 5.0960 2.6448 -0.0019 33 1 -0.6648 4.4276 -1.0234 34 1 -0.6140 3.7003 0.6004 35 1 -0.7374 5.4668 0.4199 36 1 -0.7095 6.0988 -1.1088 37 1 -2.0753 8.1333 -1.3019 38 1 -1.2398 10.2722 -0.4248 39 1 4.1242 13.9256 -1.4000 40 1 2.3699 8.3564 0.8427 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361354182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:55 Heat of formation + Delta-G solvation = 31.660713 kcal Electronic energy + Delta-G solvation = -26430.637973 eV Core-core repulsion = 22531.562265 eV Total energy + Delta-G solvation = -3899.075708 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.68737 -41.42255 -39.71198 -39.03369 -37.17257 -34.71802 -34.27437 -33.15037 -32.09337 -31.58234 -28.83163 -28.02266 -27.90648 -26.33945 -24.81455 -23.93886 -23.70914 -21.65841 -20.17185 -19.45650 -19.23292 -18.19529 -17.81795 -17.63927 -17.29914 -17.12293 -16.82981 -16.45844 -16.30707 -15.83616 -15.61748 -15.28488 -15.07355 -14.97642 -14.75002 -14.67123 -14.33258 -13.98663 -13.83662 -13.41745 -13.08198 -12.92498 -12.77449 -12.71658 -12.58293 -12.26874 -12.10057 -11.87020 -11.72808 -11.29456 -11.21965 -10.90017 -10.86328 -10.25869 -10.05089 -9.73830 -9.56501 -9.14685 -8.53690 -6.28144 -0.43371 -0.01475 0.11544 0.18331 1.01997 1.13329 1.31490 1.43541 1.55631 1.72447 1.90411 2.21268 2.49428 2.75225 2.84401 2.89490 2.94478 3.12964 3.49529 3.84956 3.89135 3.93211 4.16738 4.24617 4.30529 4.35939 4.40345 4.41317 4.44388 4.45068 4.57652 4.74437 4.77883 4.85244 4.99711 5.08029 5.25692 5.29792 5.41127 5.58617 5.68845 5.79504 5.85610 6.10078 6.10808 6.78389 6.88530 7.06265 8.60057 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.020712 B = 0.002445 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.547357 B =11448.131840 C =12368.990168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.302 6.302 3 C 0.377 3.623 4 C -0.266 4.266 5 C 0.191 3.809 6 N -0.570 5.570 7 C 0.557 3.443 8 N -0.529 5.529 9 C 0.059 3.941 10 C 0.559 3.441 11 O -0.503 6.503 12 C -0.154 4.154 13 C -0.076 4.076 14 C -0.118 4.118 15 C -0.053 4.053 16 C -0.118 4.118 17 S -0.111 6.111 18 C -0.524 4.524 19 H 0.045 0.955 20 C 0.039 3.961 21 N -0.920 5.920 22 Si 0.923 3.077 23 H -0.263 1.263 24 H -0.258 1.258 25 H -0.224 1.224 26 C -0.037 4.037 27 N -0.595 5.595 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.061 0.939 31 H 0.185 0.815 32 H 0.204 0.796 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.186 0.814 37 H 0.182 0.818 38 H 0.143 0.857 39 H 0.278 0.722 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 -27.510 3.202 30.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.205 6.205 3 C 0.189 3.811 4 C -0.290 4.290 5 C 0.029 3.971 6 N -0.294 5.294 7 C 0.202 3.798 8 N -0.258 5.258 9 C -0.080 4.080 10 C 0.348 3.652 11 O -0.374 6.374 12 C -0.159 4.159 13 C -0.094 4.094 14 C -0.137 4.137 15 C -0.074 4.074 16 C -0.229 4.229 17 S 0.123 5.877 18 C -0.671 4.671 19 H 0.063 0.937 20 C -0.166 4.166 21 N -0.558 5.558 22 Si 0.743 3.257 23 H -0.188 1.188 24 H -0.182 1.182 25 H -0.148 1.148 26 C -0.059 4.059 27 N -0.333 5.333 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.080 0.920 31 H 0.202 0.798 32 H 0.221 0.779 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.129 0.871 36 H 0.203 0.797 37 H 0.200 0.800 38 H 0.161 0.839 39 H 0.087 0.913 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.576 -26.179 4.218 29.348 hybrid contribution 1.349 -0.395 -0.953 1.698 sum -11.227 -26.574 3.265 29.033 Atomic orbital electron populations 1.23218 0.75034 1.05332 1.02782 1.86288 1.25072 1.22572 1.86591 1.20074 0.90028 0.84093 0.86936 1.22152 0.92474 1.01818 1.12527 1.23602 1.01765 0.85514 0.86226 1.68545 1.04379 1.35405 1.21091 1.19108 0.85619 0.85012 0.90036 1.45185 1.09485 1.01808 1.69294 1.22895 0.74226 1.05961 1.04961 1.18787 0.87438 0.82968 0.75990 1.90876 1.15518 1.86022 1.45012 1.19612 0.97449 0.91437 1.07410 1.22496 0.90700 1.01512 0.94661 1.21622 1.02075 0.90398 0.99607 1.22153 0.93308 1.00010 0.91894 1.22053 0.98543 0.96783 1.05555 1.82593 1.64361 1.16337 1.24389 1.22389 1.33428 1.13229 0.98097 0.93682 1.25758 0.92884 0.97375 1.00568 1.70037 1.29268 1.24336 1.32149 0.85758 0.81795 0.78937 0.79170 1.18777 1.18187 1.14773 1.21581 0.97898 0.91175 0.95263 1.67254 1.41451 0.97474 1.27133 0.91903 0.85363 0.92030 0.79791 0.77949 0.88325 0.88572 0.87145 0.79712 0.80028 0.83889 0.91277 0.87514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.41 113.37 1.18 1.47 16 2 O -0.30 -4.76 10.49 -88.10 -0.92 -5.69 16 3 C 0.38 7.44 7.53 84.85 0.64 8.08 16 4 C -0.27 -4.55 10.12 22.55 0.23 -4.32 16 5 C 0.19 4.10 11.29 84.59 0.95 5.06 16 6 N -0.57 -17.67 7.88 -197.96 -1.56 -19.23 16 7 C 0.56 15.69 8.13 261.35 2.12 17.81 16 8 N -0.53 -14.08 3.07 -670.55 -2.06 -16.14 16 9 C 0.06 0.89 8.34 127.77 1.07 1.95 16 10 C 0.56 19.23 7.45 86.77 0.65 19.88 16 11 O -0.50 -21.90 14.81 -3.84 -0.06 -21.96 16 12 C -0.15 -5.01 5.49 -20.11 -0.11 -5.12 16 13 C -0.08 -1.70 7.53 22.58 0.17 -1.53 16 14 C -0.12 -2.60 10.02 22.21 0.22 -2.37 16 15 C -0.05 -1.69 9.79 22.48 0.22 -1.47 16 16 C -0.12 -4.93 5.45 22.65 0.12 -4.80 16 17 S -0.11 -5.46 19.38 -56.49 -1.09 -6.56 16 18 C -0.52 -31.64 10.00 67.94 0.68 -30.96 16 19 H 0.04 3.02 8.02 -2.91 -0.02 3.00 16 20 C 0.04 2.33 5.50 84.84 0.47 2.80 16 21 N -0.92 -57.72 13.97 21.63 0.30 -57.42 16 22 Si 0.92 44.19 27.74 68.60 1.90 46.09 16 23 H -0.26 -12.41 7.11 99.48 0.71 -11.70 16 24 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.22 -10.12 6.74 99.48 0.67 -9.45 16 26 C -0.04 -1.53 9.34 22.70 0.21 -1.32 16 27 N -0.60 -13.39 8.16 -310.64 -2.54 -15.93 16 28 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 29 H 0.13 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 31 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.20 2.97 8.06 -2.91 -0.02 2.94 16 33 H 0.10 0.97 7.13 -2.39 -0.02 0.95 16 34 H 0.10 1.25 7.53 -2.39 -0.02 1.23 16 35 H 0.11 1.45 5.12 -2.38 -0.01 1.44 16 36 H 0.19 2.46 4.43 -2.91 -0.01 2.45 16 37 H 0.18 2.21 8.06 -2.91 -0.02 2.18 16 38 H 0.14 4.26 8.06 -2.91 -0.02 4.23 16 39 H 0.28 15.99 8.31 -92.71 -0.77 15.22 16 40 H 0.11 4.95 7.84 -2.91 -0.02 4.92 16 Total: -1.00 -85.49 357.81 3.85 -81.64 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: 1.05 Total: 10.03 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 8.82 Total: 5.15 kcal Atomic # 7 Polarization: -102.86 SS G_CDS: -5.85 Total: -108.72 kcal Atomic # 8 Polarization: -26.66 SS G_CDS: -0.98 Total: -27.64 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -5.46 SS G_CDS: -1.09 Total: -6.56 kcal Total: -85.49 3.85 -81.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361354182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.304 kcal (2) G-P(sol) polarization free energy of solvation -85.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds