Wall clock time and date at job start Wed Apr 1 2020 03:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81002 * 1 3 3 C 1.76198 * 99.99965 * 2 1 4 4 N 1.32910 * 120.17529 * 0.02562 * 3 2 1 5 5 C 1.31998 * 119.97400 * 179.97438 * 4 3 2 6 6 C 1.38824 * 120.33876 * 0.02562 * 5 4 3 7 7 N 1.31723 * 120.35916 * 359.97438 * 6 5 4 8 8 C 1.33018 * 120.01741 * 0.02562 * 7 6 5 9 9 C 1.47690 * 120.16647 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99779 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00267 * 359.96922 * 9 8 7 12 12 C 1.46500 * 119.99863 * 179.97438 * 11 9 8 13 13 C 1.50694 * 109.47127 * 180.02562 * 12 11 9 14 14 C 1.38326 * 119.96508 * 269.72629 * 13 12 11 15 15 C 1.38285 * 120.13690 * 179.76397 * 14 13 12 16 16 C 1.38126 * 120.06923 * 0.51437 * 15 14 13 17 17 C 1.38856 * 119.92964 * 359.73970 * 16 15 14 18 18 O 1.35748 * 120.06799 * 179.97438 * 17 16 15 19 19 C 1.34825 * 117.00179 * 354.49731 * 18 17 16 20 20 H 1.08001 * 119.99870 * 5.05188 * 19 18 17 21 21 C 1.38654 * 119.99923 * 185.05901 * 19 18 17 22 22 N 1.31551 * 120.00383 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99632 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47239 * 89.99917 * 23 21 19 25 25 H 1.48503 * 109.46685 * 209.99454 * 23 21 19 26 26 H 1.48490 * 109.47233 * 329.99467 * 23 21 19 27 27 C 1.38078 * 119.96513 * 90.00509 * 13 12 11 28 28 H 1.09004 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47583 * 299.99788 * 1 2 3 30 30 H 1.09003 * 109.47187 * 60.00469 * 1 2 3 31 31 H 1.08005 * 119.83050 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.82100 * 179.72281 * 6 5 4 33 33 H 0.96991 * 120.00040 * 0.02562 * 11 9 8 34 34 H 1.09003 * 109.47529 * 300.00600 * 12 11 9 35 35 H 1.09002 * 109.47136 * 60.00382 * 12 11 9 36 36 H 1.07997 * 119.93032 * 359.97438 * 14 13 12 37 37 H 1.08001 * 119.96220 * 180.25905 * 15 14 13 38 38 H 1.07999 * 120.03232 * 179.72416 * 16 15 14 39 39 H 0.97000 * 120.00211 * 180.02562 * 22 21 19 40 40 H 1.07997 * 120.03747 * 359.94907 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.1004 2.5926 0.0005 5 6 1.3342 3.8918 0.0010 6 6 2.6376 4.3697 0.0005 7 7 3.6539 3.5318 0.0000 8 6 3.4347 2.2198 -0.0005 9 6 4.5718 1.2774 -0.0005 10 8 4.3679 0.0787 -0.0006 11 7 5.8355 1.7459 -0.0006 12 6 6.9634 0.8110 -0.0001 13 6 8.2568 1.5843 0.0003 14 6 8.8532 1.9337 -1.1979 15 6 10.0376 2.6475 -1.2017 16 6 10.6343 3.0045 -0.0082 17 6 10.0408 2.6507 1.1962 18 8 10.6251 2.9997 2.3708 19 6 11.8361 3.5883 2.3009 20 1 12.2613 3.8363 1.3397 21 6 12.5356 3.8750 3.4633 22 7 12.0175 3.5732 4.6342 23 14 14.2137 4.6897 3.3664 24 1 14.0500 6.1653 3.3962 25 1 15.0400 4.2600 4.5231 26 1 14.8852 4.2915 2.1033 27 6 8.8484 1.9382 1.1967 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.5072 4.5865 0.0010 32 1 2.8192 5.4343 -0.0036 33 1 5.9982 2.7021 -0.0003 34 1 6.9151 0.1838 0.8901 35 1 6.9153 0.1831 -0.8898 36 1 8.3911 1.6514 -2.1323 37 1 10.4986 2.9225 -2.1388 38 1 11.5616 3.5581 -0.0119 39 1 12.5067 3.7741 5.4474 40 1 8.3842 1.6619 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361355066.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:41 Heat of formation + Delta-G solvation = -5.139432 kcal Electronic energy + Delta-G solvation = -25814.464708 eV Core-core repulsion = 21913.793226 eV Total energy + Delta-G solvation = -3900.671482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.23963 -40.95204 -40.31835 -38.47016 -36.03764 -35.44070 -34.28422 -32.99297 -32.08894 -30.76860 -29.81084 -27.88999 -27.19766 -26.12198 -25.53009 -23.27741 -22.54960 -22.05042 -19.93681 -19.33543 -19.11124 -18.93819 -18.40230 -16.99034 -16.92629 -16.72005 -16.46811 -16.35745 -16.09247 -15.72081 -15.54254 -15.47036 -15.12764 -14.87526 -14.37586 -14.34403 -14.25919 -13.94814 -13.71123 -13.50549 -13.36173 -13.03938 -12.80605 -12.58826 -12.55811 -12.39604 -12.28060 -12.14128 -12.10553 -11.21250 -11.07045 -10.83791 -10.79388 -10.33705 -10.24743 -9.76122 -9.03623 -8.72009 -8.46763 -6.15348 -0.81403 -0.17345 0.35455 0.37195 0.70372 1.29822 1.35907 1.44805 1.53413 1.56108 1.99921 2.17765 2.57033 2.80719 2.95101 3.15240 3.23270 3.32056 3.39352 3.78839 3.96236 3.98349 4.08946 4.29933 4.31580 4.33839 4.38284 4.40243 4.52152 4.64446 4.72485 4.94082 5.00937 5.11684 5.14027 5.22864 5.25564 5.61635 5.69936 5.71148 5.89742 6.01687 6.15620 6.26404 6.52031 6.95612 6.97944 7.78313 8.76406 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.018398 B = 0.002093 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.498757 B =13372.746806 C =13734.230128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 S 0.019 5.981 3 C 0.088 3.912 4 N -0.461 5.461 5 C 0.112 3.888 6 C 0.042 3.958 7 N -0.412 5.412 8 C 0.009 3.991 9 C 0.565 3.435 10 O -0.533 6.533 11 N -0.694 5.694 12 C 0.173 3.827 13 C -0.061 4.061 14 C -0.168 4.168 15 C -0.069 4.069 16 C -0.233 4.233 17 C 0.112 3.888 18 O -0.232 6.232 19 C -0.412 4.412 20 H 0.104 0.896 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.019 2.981 24 H -0.263 1.263 25 H -0.273 1.273 26 H -0.252 1.252 27 C -0.180 4.180 28 H 0.119 0.881 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.219 0.781 33 H 0.415 0.585 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.122 0.878 39 H 0.272 0.728 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.013 0.838 -13.822 26.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.342 4.342 2 S 0.262 5.738 3 C -0.160 4.160 4 N -0.180 5.180 5 C -0.056 4.056 6 C -0.126 4.126 7 N -0.129 5.129 8 C -0.138 4.138 9 C 0.350 3.650 10 O -0.412 6.412 11 N -0.345 5.345 12 C 0.050 3.950 13 C -0.061 4.061 14 C -0.186 4.186 15 C -0.087 4.087 16 C -0.252 4.252 17 C 0.062 3.938 18 O -0.139 6.139 19 C -0.488 4.488 20 H 0.121 0.879 21 C -0.222 4.222 22 N -0.560 5.560 23 Si 0.838 3.162 24 H -0.188 1.188 25 H -0.198 1.198 26 H -0.175 1.175 27 C -0.200 4.200 28 H 0.137 0.863 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.244 0.756 32 H 0.236 0.764 33 H 0.252 0.748 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.166 0.834 37 H 0.168 0.832 38 H 0.140 0.860 39 H 0.081 0.919 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -21.454 -1.276 -13.378 25.315 hybrid contribution 0.166 1.937 0.638 2.046 sum -21.288 0.661 -12.740 24.818 Atomic orbital electron populations 1.23844 0.96533 1.07285 1.06544 1.87373 1.05229 0.94200 1.86988 1.24418 0.91929 1.02184 0.97518 1.69043 1.31265 1.04579 1.13088 1.24931 0.99693 0.91971 0.88982 1.24562 0.88702 1.02591 0.96767 1.68326 1.37010 1.01432 1.06173 1.21449 0.92619 0.92210 1.07499 1.17752 0.82867 0.87131 0.77297 1.90727 1.83864 1.15345 1.51231 1.45827 1.04228 1.11671 1.72732 1.20178 0.80834 0.90436 1.03527 1.19419 0.95730 0.98712 0.92257 1.21003 0.97214 1.03050 0.97373 1.21166 0.94854 0.95631 0.97062 1.21379 1.03376 1.07908 0.92548 1.19844 0.93494 0.93741 0.86725 1.83948 1.32995 1.69818 1.27117 1.21832 0.92764 1.38641 0.95585 0.87853 1.26600 1.04030 0.98012 0.93508 1.70188 1.40412 1.46934 0.98439 0.84584 0.74444 0.78193 0.78991 1.18754 1.19831 1.17514 1.20219 0.96322 1.04882 0.98600 0.86269 0.89538 0.89281 0.75642 0.76442 0.74834 0.91137 0.88636 0.83426 0.83242 0.86041 0.91890 0.87546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 9.66 113.37 1.10 -1.49 16 2 S 0.02 0.45 19.62 -56.49 -1.11 -0.66 16 3 C 0.09 2.10 7.01 85.08 0.60 2.69 16 4 N -0.46 -8.53 9.32 -190.23 -1.77 -10.30 16 5 C 0.11 1.25 11.22 84.81 0.95 2.21 16 6 C 0.04 0.55 11.21 84.85 0.95 1.50 16 7 N -0.41 -9.03 9.70 -183.90 -1.78 -10.81 16 8 C 0.01 0.24 6.77 42.01 0.28 0.52 16 9 C 0.56 16.53 7.79 86.74 0.68 17.20 16 10 O -0.53 -17.48 13.77 -3.98 -0.05 -17.53 16 11 N -0.69 -19.26 5.54 -469.85 -2.60 -21.87 16 12 C 0.17 4.89 5.80 85.63 0.50 5.39 16 13 C -0.06 -1.98 5.25 -19.88 -0.10 -2.08 16 14 C -0.17 -4.88 9.70 22.30 0.22 -4.67 16 15 C -0.07 -2.20 10.04 22.25 0.22 -1.98 16 16 C -0.23 -9.67 9.17 22.39 0.21 -9.47 16 17 C 0.11 5.46 6.65 22.58 0.15 5.61 16 18 O -0.23 -13.82 9.76 -22.67 -0.22 -14.04 16 19 C -0.41 -23.67 9.49 67.92 0.64 -23.03 16 20 H 0.10 5.39 5.20 -2.91 -0.02 5.37 16 21 C -0.02 -1.36 5.49 84.83 0.47 -0.90 16 22 N -0.92 -56.55 13.67 21.61 0.30 -56.25 16 23 Si 1.02 42.41 29.55 68.60 2.03 44.43 16 24 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 27 C -0.18 -7.56 9.65 22.39 0.22 -7.34 16 28 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.09 1.27 8.13 -2.40 -0.02 1.25 16 30 H 0.09 1.25 8.13 -2.39 -0.02 1.23 16 31 H 0.23 0.21 8.06 -2.91 -0.02 0.18 16 32 H 0.22 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.41 11.22 7.81 -92.71 -0.72 10.50 16 34 H 0.07 2.13 8.08 -2.39 -0.02 2.11 16 35 H 0.10 2.41 8.08 -2.39 -0.02 2.39 16 36 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 37 H 0.15 3.62 8.06 -2.91 -0.02 3.59 16 38 H 0.12 5.12 5.64 -2.91 -0.02 5.10 16 39 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 40 H 0.11 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -77.69 364.95 2.23 -75.46 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.38 Total: 27.39 kcal Atomic # 6 Polarization: -22.90 SS G_CDS: 7.07 Total: -15.83 kcal Atomic # 7 Polarization: -93.36 SS G_CDS: -5.86 Total: -99.23 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -0.28 Total: -31.58 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 16 Polarization: 0.45 SS G_CDS: -1.11 Total: -0.66 kcal Total: -77.69 2.23 -75.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361355066.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.322 kcal (2) G-P(sol) polarization free energy of solvation -77.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds