Wall clock time and date at job start Wed Apr 1 2020 02:57:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00021 * 2 1 4 4 C 1.34783 * 120.00015 * 179.73068 * 2 1 3 5 5 O 1.21509 * 119.99718 * 5.16634 * 4 2 1 6 6 C 1.48185 * 120.00147 * 185.17323 * 4 2 1 7 7 C 1.39056 * 119.68906 * 187.05026 * 6 4 2 8 8 C 1.39418 * 118.96073 * 179.97438 * 7 6 4 9 9 N 1.39385 * 120.83539 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00309 * 29.08532 * 9 8 7 11 11 O 1.21776 * 119.99615 * 5.23117 * 10 9 8 12 12 C 1.46167 * 120.00432 * 185.23647 * 10 9 8 13 13 S 1.75666 * 125.22844 * 0.02562 * 12 10 9 14 14 C 1.75475 * 92.09261 * 180.02562 * 13 12 10 15 15 C 1.32756 * 111.37077 * 359.97438 * 14 13 12 16 16 C 1.39589 * 125.22699 * 179.71884 * 12 10 9 17 17 C 1.40506 * 123.72247 * 0.02562 * 16 12 10 18 18 H 1.08003 * 120.00156 * 31.67458 * 17 16 12 19 19 C 1.40321 * 119.99825 * 211.66581 * 17 16 12 20 20 N 1.30632 * 120.00015 * 5.97178 * 19 17 16 21 21 Si 1.86795 * 119.99899 * 185.96617 * 19 17 16 22 22 H 1.48506 * 109.47337 * 90.00414 * 21 19 17 23 23 H 1.48502 * 109.47590 * 210.00276 * 21 19 17 24 24 H 1.48503 * 109.47189 * 330.00647 * 21 19 17 25 25 C 1.39398 * 118.33592 * 359.97438 * 8 7 6 26 26 C 1.38272 * 119.26337 * 0.02562 * 25 8 7 27 27 N 1.31625 * 120.99387 * 359.73182 * 26 25 8 28 28 H 1.08994 * 109.47163 * 359.97438 * 1 2 3 29 29 H 1.09011 * 109.47213 * 119.99711 * 1 2 3 30 30 H 1.08994 * 109.47540 * 239.99313 * 1 2 3 31 31 H 1.09000 * 109.47026 * 96.26022 * 3 2 1 32 32 H 1.09003 * 109.47647 * 216.25352 * 3 2 1 33 33 H 1.09000 * 109.47305 * 336.25393 * 3 2 1 34 34 H 1.07997 * 120.52340 * 0.02562 * 7 6 4 35 35 H 0.97009 * 120.00483 * 209.09027 * 9 8 7 36 36 H 1.07997 * 124.31605 * 179.97438 * 14 13 12 37 37 H 1.08009 * 122.78550 * 179.97438 * 15 14 13 38 38 H 0.97005 * 119.99866 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.37245 * 179.97438 * 25 8 7 40 40 H 1.08001 * 119.49981 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 0.0055 5 8 1.5350 -2.2178 -0.0843 6 6 3.6162 -1.1693 0.1212 7 6 4.3165 -2.3622 -0.0211 8 6 5.7061 -2.3466 0.0901 9 7 6.4469 -3.5196 -0.0452 10 6 5.9883 -4.5204 -0.8227 11 8 4.9761 -4.3646 -1.4816 12 6 6.7056 -5.7929 -0.8750 13 16 8.1731 -6.1661 0.0155 14 6 8.2462 -7.7851 -0.6571 15 6 7.2345 -8.0105 -1.4865 16 6 6.3265 -6.9003 -1.6355 17 6 5.1887 -6.9282 -2.4594 18 1 4.8493 -6.0237 -2.9423 19 6 4.4934 -8.1313 -2.6548 20 7 4.8321 -9.1982 -1.9815 21 14 3.0834 -8.2070 -3.8777 22 1 3.6081 -8.5817 -5.2156 23 1 2.0952 -9.2218 -3.4318 24 1 2.4261 -6.8779 -3.9584 25 6 6.3363 -1.1286 0.3400 26 6 5.5698 0.0150 0.4690 27 7 4.2593 -0.0308 0.3542 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8901 30 1 -0.3634 -0.5139 0.8899 31 1 2.4761 1.5273 1.0215 32 1 3.0968 1.1691 -0.6077 33 1 1.5645 2.0537 -0.4138 34 1 3.7922 -3.2862 -0.2156 35 1 7.2926 -3.6156 0.4202 36 1 9.0161 -8.5063 -0.4258 37 1 7.1004 -8.9491 -2.0040 38 1 4.3511 -10.0298 -2.1163 39 1 7.4111 -1.0787 0.4327 40 1 6.0540 0.9607 0.6631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361714702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:07 Heat of formation + Delta-G solvation = 10.441744 kcal Electronic energy + Delta-G solvation = -26901.260876 eV Core-core repulsion = 23001.265045 eV Total energy + Delta-G solvation = -3899.995832 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.71752 -39.30600 -38.18479 -36.26213 -35.52213 -34.42210 -33.19235 -31.35641 -30.77564 -29.01709 -28.02473 -26.52963 -26.33158 -23.61618 -23.54991 -22.17731 -20.60126 -19.71044 -18.95059 -18.11699 -17.38361 -16.64789 -15.96137 -15.81466 -15.80625 -15.68090 -15.32298 -15.02069 -14.45552 -14.21793 -13.80107 -13.75443 -13.59648 -13.29762 -12.82546 -12.64673 -12.58652 -12.47655 -12.38535 -12.04017 -11.97655 -11.82540 -11.55836 -11.22548 -11.17325 -10.52863 -10.49040 -10.32980 -10.11843 -9.74680 -9.42736 -9.34230 -9.07877 -8.64689 -8.60964 -8.14553 -7.63069 -7.24955 -7.15567 -4.69122 0.84049 1.41737 2.00036 2.88313 2.92110 2.94404 2.97516 3.00207 3.06809 3.44234 3.62251 3.64612 3.79696 3.99316 4.18815 4.29135 4.75761 5.05271 5.09353 5.11721 5.20205 5.30574 5.40406 5.43024 5.69235 5.72790 5.75632 5.89839 5.94031 6.03332 6.28499 6.45719 6.49880 6.66451 6.73524 6.94611 7.04529 7.14531 7.28827 7.32972 7.52270 7.86256 8.03519 8.21542 8.27816 8.40970 8.54306 9.18180 9.77215 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.003621 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.007423 B = 7730.733313 C = 9972.135227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.611 5.611 3 C 0.093 3.907 4 C 0.570 3.430 5 O -0.523 6.523 6 C 0.087 3.913 7 C -0.118 4.118 8 C 0.217 3.783 9 N -0.681 5.681 10 C 0.590 3.410 11 O -0.532 6.532 12 C -0.427 4.427 13 S -0.050 6.050 14 C -0.198 4.198 15 C -0.095 4.095 16 C 0.147 3.853 17 C -0.369 4.369 18 H 0.108 0.892 19 C 0.068 3.932 20 N -0.773 5.773 21 Si 0.924 3.076 22 H -0.263 1.263 23 H -0.273 1.273 24 H -0.251 1.251 25 C -0.201 4.201 26 C 0.110 3.890 27 N -0.483 5.483 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.093 0.907 33 H 0.054 0.946 34 H 0.166 0.834 35 H 0.407 0.593 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.291 0.709 39 H 0.138 0.862 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 13.550 3.714 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.345 5.345 3 C -0.049 4.049 4 C 0.357 3.643 5 O -0.397 6.397 6 C -0.049 4.049 7 C -0.142 4.142 8 C 0.110 3.890 9 N -0.324 5.324 10 C 0.390 3.610 11 O -0.413 6.413 12 C -0.545 4.545 13 S 0.205 5.795 14 C -0.332 4.332 15 C -0.127 4.127 16 C 0.136 3.864 17 C -0.400 4.400 18 H 0.126 0.874 19 C -0.155 4.155 20 N -0.396 5.396 21 Si 0.747 3.253 22 H -0.188 1.188 23 H -0.197 1.197 24 H -0.175 1.175 25 C -0.225 4.225 26 C -0.049 4.049 27 N -0.198 5.198 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.072 0.928 34 H 0.184 0.816 35 H 0.242 0.758 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.102 0.898 39 H 0.155 0.845 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.181 14.244 4.284 14.876 hybrid contribution -0.232 -1.797 -1.082 2.110 sum -0.413 12.447 3.202 12.859 Atomic orbital electron populations 1.21641 0.79093 1.02076 1.02429 1.47585 1.06789 1.06805 1.73277 1.22113 0.96931 0.83029 1.02862 1.17970 0.85978 0.83429 0.76916 1.90823 1.68857 1.31158 1.48897 1.20764 0.93735 0.89644 1.00774 1.22328 0.92824 1.00749 0.98309 1.18028 0.90922 0.86913 0.93127 1.43696 1.24440 1.14411 1.49831 1.17040 0.84116 0.81873 0.77968 1.90737 1.25472 1.80815 1.44267 1.22459 1.08984 1.01213 1.21874 1.82714 1.30323 1.11438 1.55064 1.24916 1.04145 0.99263 1.04883 1.21588 0.92746 0.99873 0.98523 1.17915 0.91967 0.87974 0.88556 1.19962 1.05452 0.95791 1.18758 0.87379 1.26344 0.99348 0.94357 0.95419 1.69646 1.36187 1.01697 1.32119 0.85998 0.79474 0.80181 0.79674 1.18829 1.19735 1.17470 1.22033 1.01493 0.91914 1.07018 1.22475 0.89081 0.97708 0.95661 1.67953 1.10390 1.27192 1.14270 0.90699 0.92007 0.92204 0.92337 0.88883 0.92759 0.81619 0.75756 0.84185 0.84190 0.89821 0.84464 0.82212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.99 10.17 59.84 0.61 1.60 16 2 N -0.61 -8.41 3.27 -190.52 -0.62 -9.03 16 3 C 0.09 0.98 9.09 59.85 0.54 1.53 16 4 C 0.57 10.20 7.65 -12.17 -0.09 10.10 16 5 O -0.52 -11.24 16.35 5.36 0.09 -11.15 16 6 C 0.09 1.51 6.56 -83.05 -0.55 0.97 16 7 C -0.12 -2.33 8.27 -38.84 -0.32 -2.65 16 8 C 0.22 3.81 6.39 -83.55 -0.53 3.27 16 9 N -0.68 -12.89 5.34 -11.04 -0.06 -12.95 16 10 C 0.59 13.96 7.55 -13.08 -0.10 13.86 16 11 O -0.53 -14.13 12.05 5.12 0.06 -14.07 16 12 C -0.43 -10.33 6.50 -35.90 -0.23 -10.57 16 13 S -0.05 -1.00 22.26 -107.50 -2.39 -3.40 16 14 C -0.20 -4.07 11.07 28.86 0.32 -3.76 16 15 C -0.10 -2.21 9.00 -39.12 -0.35 -2.56 16 16 C 0.15 3.78 5.58 -106.20 -0.59 3.18 16 17 C -0.37 -9.69 8.30 -37.94 -0.31 -10.01 16 18 H 0.11 2.97 6.39 -52.48 -0.34 2.64 16 19 C 0.07 1.63 5.41 -17.28 -0.09 1.54 16 20 N -0.77 -18.40 11.17 55.57 0.62 -17.78 16 21 Si 0.92 18.60 29.57 -169.99 -5.03 13.57 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 24 H -0.25 -5.35 7.11 56.52 0.40 -4.94 16 25 C -0.20 -2.64 10.05 -39.14 -0.39 -3.03 16 26 C 0.11 1.30 11.17 -17.63 -0.20 1.11 16 27 N -0.48 -6.78 6.16 -9.88 -0.06 -6.85 16 28 H 0.07 0.56 7.71 -51.93 -0.40 0.16 16 29 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.59 7.97 -51.93 -0.41 0.17 16 32 H 0.09 1.08 5.84 -51.93 -0.30 0.78 16 33 H 0.05 0.43 7.79 -51.93 -0.40 0.02 16 34 H 0.17 3.90 5.80 -52.49 -0.30 3.60 16 35 H 0.41 6.67 7.90 -40.82 -0.32 6.35 16 36 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 37 H 0.14 3.21 6.87 -52.48 -0.36 2.85 16 38 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 39 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -31.03 355.28 -8.43 -39.46 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -4.09 Total: 12.25 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -2.30 Total: 4.59 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -0.12 Total: -46.60 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: 0.15 Total: -25.22 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -2.39 Total: -3.40 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.03 -8.43 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361714702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.900 kcal (2) G-P(sol) polarization free energy of solvation -31.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds