Wall clock time and date at job start Wed Apr 1 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00021 * 2 1 4 4 C 1.34783 * 120.00015 * 179.73068 * 2 1 3 5 5 O 1.21509 * 119.99718 * 5.16634 * 4 2 1 6 6 C 1.48185 * 120.00147 * 185.17323 * 4 2 1 7 7 C 1.39056 * 119.68906 * 187.05026 * 6 4 2 8 8 C 1.39418 * 118.96073 * 179.97438 * 7 6 4 9 9 N 1.39385 * 120.83539 * 179.97438 * 8 7 6 10 10 C 1.34778 * 120.00309 * 29.08532 * 9 8 7 11 11 O 1.21776 * 119.99615 * 5.23117 * 10 9 8 12 12 C 1.46167 * 120.00432 * 185.23647 * 10 9 8 13 13 S 1.75666 * 125.22844 * 0.02562 * 12 10 9 14 14 C 1.75475 * 92.09261 * 180.02562 * 13 12 10 15 15 C 1.32756 * 111.37077 * 359.97438 * 14 13 12 16 16 C 1.39589 * 125.22699 * 179.71884 * 12 10 9 17 17 C 1.40506 * 123.72247 * 0.02562 * 16 12 10 18 18 H 1.08003 * 120.00156 * 31.67458 * 17 16 12 19 19 C 1.40321 * 119.99825 * 211.66581 * 17 16 12 20 20 N 1.30632 * 120.00015 * 5.97178 * 19 17 16 21 21 Si 1.86795 * 119.99899 * 185.96617 * 19 17 16 22 22 H 1.48506 * 109.47337 * 90.00414 * 21 19 17 23 23 H 1.48502 * 109.47590 * 210.00276 * 21 19 17 24 24 H 1.48503 * 109.47189 * 330.00647 * 21 19 17 25 25 C 1.39398 * 118.33592 * 359.97438 * 8 7 6 26 26 C 1.38272 * 119.26337 * 0.02562 * 25 8 7 27 27 N 1.31625 * 120.99387 * 359.73182 * 26 25 8 28 28 H 1.08994 * 109.47163 * 359.97438 * 1 2 3 29 29 H 1.09011 * 109.47213 * 119.99711 * 1 2 3 30 30 H 1.08994 * 109.47540 * 239.99313 * 1 2 3 31 31 H 1.09000 * 109.47026 * 96.26022 * 3 2 1 32 32 H 1.09003 * 109.47647 * 216.25352 * 3 2 1 33 33 H 1.09000 * 109.47305 * 336.25393 * 3 2 1 34 34 H 1.07997 * 120.52340 * 0.02562 * 7 6 4 35 35 H 0.97009 * 120.00483 * 209.09027 * 9 8 7 36 36 H 1.07997 * 124.31605 * 179.97438 * 14 13 12 37 37 H 1.08009 * 122.78550 * 179.97438 * 15 14 13 38 38 H 0.97005 * 119.99866 * 179.97438 * 20 19 17 39 39 H 1.07995 * 120.37245 * 179.97438 * 25 8 7 40 40 H 1.08001 * 119.49981 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.1389 -1.1672 0.0055 5 8 1.5350 -2.2178 -0.0843 6 6 3.6162 -1.1693 0.1212 7 6 4.3165 -2.3622 -0.0211 8 6 5.7061 -2.3466 0.0901 9 7 6.4469 -3.5196 -0.0452 10 6 5.9883 -4.5204 -0.8227 11 8 4.9761 -4.3646 -1.4816 12 6 6.7056 -5.7929 -0.8750 13 16 8.1731 -6.1661 0.0155 14 6 8.2462 -7.7851 -0.6571 15 6 7.2345 -8.0105 -1.4865 16 6 6.3265 -6.9003 -1.6355 17 6 5.1887 -6.9282 -2.4594 18 1 4.8493 -6.0237 -2.9423 19 6 4.4934 -8.1313 -2.6548 20 7 4.8321 -9.1982 -1.9815 21 14 3.0834 -8.2070 -3.8777 22 1 3.6081 -8.5817 -5.2156 23 1 2.0952 -9.2218 -3.4318 24 1 2.4261 -6.8779 -3.9584 25 6 6.3363 -1.1286 0.3400 26 6 5.5698 0.0150 0.4690 27 7 4.2593 -0.0308 0.3542 28 1 -0.3633 1.0276 0.0005 29 1 -0.3634 -0.5138 -0.8901 30 1 -0.3634 -0.5139 0.8899 31 1 2.4761 1.5273 1.0215 32 1 3.0968 1.1691 -0.6077 33 1 1.5645 2.0537 -0.4138 34 1 3.7922 -3.2862 -0.2156 35 1 7.2926 -3.6156 0.4202 36 1 9.0161 -8.5063 -0.4258 37 1 7.1004 -8.9491 -2.0040 38 1 4.3511 -10.0298 -2.1163 39 1 7.4111 -1.0787 0.4327 40 1 6.0540 0.9607 0.6631 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361714702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:06 Heat of formation + Delta-G solvation = -10.559186 kcal Electronic energy + Delta-G solvation = -26902.171545 eV Core-core repulsion = 23001.265045 eV Total energy + Delta-G solvation = -3900.906500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03886 -40.79172 -39.66680 -38.00367 -36.77037 -36.02391 -34.99527 -32.57368 -32.24134 -30.75672 -28.98188 -28.23605 -27.51676 -25.11383 -24.73417 -23.75973 -22.15656 -21.10666 -20.72478 -19.73401 -18.73588 -18.01913 -17.68299 -17.24931 -17.01444 -17.00181 -16.74636 -16.51826 -16.09530 -15.61667 -15.39423 -15.07089 -14.85031 -14.59387 -14.30182 -14.17465 -14.09629 -13.84191 -13.52472 -13.41131 -13.25608 -13.20451 -13.00382 -12.84244 -12.79907 -12.19214 -12.13285 -12.03037 -11.53064 -11.45341 -11.16960 -10.78528 -10.34207 -10.21034 -9.74487 -9.65297 -9.37267 -8.97358 -8.93597 -6.56199 -0.43899 0.02062 0.33126 1.26351 1.27852 1.28982 1.41156 1.58286 1.63138 1.84817 1.89837 2.11866 2.15981 2.36595 2.83543 3.05832 3.17291 3.64348 3.89005 4.00870 4.19059 4.28681 4.35823 4.44812 4.48867 4.49764 4.63277 4.82160 4.84379 4.92094 4.93136 5.05717 5.13221 5.15635 5.30648 5.34347 5.48143 5.56599 5.72902 5.74762 6.16976 6.27621 6.40511 6.55438 6.68038 6.72187 6.99735 7.42034 8.01663 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.010999 B = 0.003621 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.007423 B = 7730.733313 C = 9972.135227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.601 5.601 3 C 0.089 3.911 4 C 0.554 3.446 5 O -0.580 6.580 6 C 0.080 3.920 7 C -0.152 4.152 8 C 0.188 3.812 9 N -0.669 5.669 10 C 0.584 3.416 11 O -0.573 6.573 12 C -0.461 4.461 13 S 0.023 5.977 14 C -0.183 4.183 15 C -0.127 4.127 16 C 0.122 3.878 17 C -0.414 4.414 18 H 0.077 0.923 19 C 0.039 3.961 20 N -0.791 5.791 21 Si 0.981 3.019 22 H -0.243 1.243 23 H -0.254 1.254 24 H -0.281 1.281 25 C -0.173 4.173 26 C 0.124 3.876 27 N -0.465 5.465 28 H 0.121 0.879 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.112 0.888 35 H 0.419 0.581 36 H 0.182 0.818 37 H 0.136 0.864 38 H 0.302 0.698 39 H 0.181 0.819 40 H 0.222 0.778 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.726 16.586 5.109 17.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.333 5.333 3 C -0.052 4.052 4 C 0.342 3.658 5 O -0.460 6.460 6 C -0.056 4.056 7 C -0.177 4.177 8 C 0.083 3.917 9 N -0.313 5.313 10 C 0.383 3.617 11 O -0.457 6.457 12 C -0.579 4.579 13 S 0.279 5.721 14 C -0.317 4.317 15 C -0.159 4.159 16 C 0.111 3.889 17 C -0.445 4.445 18 H 0.095 0.905 19 C -0.181 4.181 20 N -0.416 5.416 21 Si 0.802 3.198 22 H -0.166 1.166 23 H -0.178 1.178 24 H -0.206 1.206 25 C -0.196 4.196 26 C -0.035 4.035 27 N -0.179 5.179 28 H 0.139 0.861 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.130 0.870 35 H 0.258 0.742 36 H 0.199 0.801 37 H 0.154 0.846 38 H 0.113 0.887 39 H 0.199 0.801 40 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 2.037 17.355 5.723 18.388 hybrid contribution -0.797 -2.445 -1.353 2.906 sum 1.239 14.910 4.370 15.587 Atomic orbital electron populations 1.21874 0.77519 1.04755 1.01626 1.47800 1.08046 1.06663 1.70741 1.22318 0.97188 0.82023 1.03666 1.18311 0.86558 0.83984 0.76962 1.90781 1.69901 1.33374 1.51958 1.20645 0.93682 0.89816 1.01499 1.22013 0.94291 0.99865 1.01482 1.18295 0.90137 0.87989 0.95282 1.43267 1.24774 1.14167 1.49110 1.17232 0.83526 0.82845 0.78100 1.90726 1.27158 1.81801 1.45982 1.22975 1.11266 1.01342 1.22361 1.82254 1.26634 1.10320 1.52913 1.25463 1.03512 1.00171 1.02514 1.21453 0.93839 0.99583 1.01038 1.18353 0.92315 0.89608 0.88642 1.19866 1.07432 0.95815 1.21391 0.90534 1.26897 1.00945 0.93625 0.96669 1.69622 1.37233 1.02111 1.32591 0.85201 0.76990 0.78850 0.78804 1.16624 1.17801 1.20566 1.22528 1.03687 0.89835 1.03502 1.23519 0.88008 0.99468 0.92497 1.68122 1.11698 1.24833 1.13271 0.86104 0.93239 0.92753 0.91163 0.89788 0.89150 0.87009 0.74233 0.80081 0.84620 0.88696 0.80148 0.76196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.79 10.17 127.77 1.30 3.09 16 2 N -0.60 -16.23 3.27 -874.98 -2.86 -19.09 16 3 C 0.09 1.61 9.09 127.77 1.16 2.77 16 4 C 0.55 20.93 7.65 86.89 0.66 21.60 16 5 O -0.58 -27.50 16.35 -3.74 -0.06 -27.56 16 6 C 0.08 2.84 6.56 41.84 0.27 3.11 16 7 C -0.15 -6.43 8.27 22.75 0.19 -6.24 16 8 C 0.19 6.63 6.39 38.50 0.25 6.88 16 9 N -0.67 -25.78 5.34 -307.03 -1.64 -27.42 16 10 C 0.58 29.34 7.55 86.30 0.65 30.00 16 11 O -0.57 -33.53 12.05 -4.59 -0.06 -33.58 16 12 C -0.46 -23.17 6.50 24.66 0.16 -23.01 16 13 S 0.02 0.90 22.26 -56.49 -1.26 -0.35 16 14 C -0.18 -7.22 11.07 66.64 0.74 -6.48 16 15 C -0.13 -6.01 9.00 22.61 0.20 -5.80 16 16 C 0.12 6.63 5.58 -20.89 -0.12 6.51 16 17 C -0.41 -23.58 8.30 23.33 0.19 -23.39 16 18 H 0.08 4.70 6.39 -2.91 -0.02 4.68 16 19 C 0.04 1.98 5.41 85.38 0.46 2.44 16 20 N -0.79 -39.18 11.17 21.89 0.24 -38.94 16 21 Si 0.98 40.45 29.57 68.60 2.03 42.48 16 22 H -0.24 -9.10 7.11 99.48 0.71 -8.39 16 23 H -0.25 -9.62 7.11 99.48 0.71 -8.91 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 C -0.17 -3.91 10.05 22.56 0.23 -3.68 16 26 C 0.12 2.34 11.17 84.73 0.95 3.29 16 27 N -0.46 -11.91 6.16 -185.18 -1.14 -13.05 16 28 H 0.12 1.43 7.71 -2.39 -0.02 1.41 16 29 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 1.15 7.97 -2.39 -0.02 1.13 16 32 H 0.08 1.71 5.84 -2.39 -0.01 1.69 16 33 H 0.09 1.02 7.79 -2.39 -0.02 1.00 16 34 H 0.11 5.98 5.80 -2.91 -0.02 5.96 16 35 H 0.42 13.30 7.90 -92.70 -0.73 12.56 16 36 H 0.18 5.58 8.06 -2.91 -0.02 5.55 16 37 H 0.14 6.42 6.87 -2.91 -0.02 6.40 16 38 H 0.30 13.21 8.29 -92.70 -0.77 12.45 16 39 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 40 H 0.22 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -79.34 355.28 2.94 -76.40 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.39 Total: 30.02 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: 7.30 Total: 11.09 kcal Atomic # 7 Polarization: -93.09 SS G_CDS: -5.40 Total: -98.49 kcal Atomic # 8 Polarization: -61.03 SS G_CDS: -0.12 Total: -61.14 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -1.26 Total: -0.35 kcal Total: -79.34 2.94 -76.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361714702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.843 kcal (2) G-P(sol) polarization free energy of solvation -79.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds