Wall clock time and date at job start Wed Apr 1 2020 03:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76200 * 99.99994 * 2 1 4 4 C 1.39764 * 120.49615 * 179.97438 * 3 2 1 5 5 C 1.38052 * 118.46159 * 180.02562 * 4 3 2 6 6 N 1.32545 * 119.29227 * 0.02562 * 5 4 3 7 7 C 1.32390 * 120.95224 * 359.97438 * 6 5 4 8 8 N 1.38935 * 119.16151 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99844 * 359.97438 * 8 7 6 10 10 O 1.21268 * 119.99735 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99878 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.46970 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.07187 * 359.77180 * 14 13 12 16 16 C 1.38861 * 119.92847 * 0.50048 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.74703 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 N 1.32370 * 121.68081 * 0.25684 * 7 6 5 28 28 H 1.08997 * 109.47348 * 299.99941 * 1 2 3 29 29 H 1.08999 * 109.47363 * 59.99601 * 1 2 3 30 30 H 1.08998 * 109.47482 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.76842 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.35663 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00345 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47386 * 59.99804 * 11 9 8 35 35 H 1.08997 * 109.47038 * 299.99640 * 11 9 8 36 36 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.03711 * 180.27572 * 15 14 13 39 39 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4251 2.2246 0.0005 5 6 3.6164 3.5918 0.0011 6 7 2.5614 4.3942 0.0016 7 6 1.3321 3.9028 0.0010 8 7 0.2531 4.7781 0.0021 9 6 0.4651 6.1091 0.0042 10 8 1.5977 6.5427 0.0046 11 6 -0.7052 7.0585 0.0060 12 6 -0.2002 8.4783 0.0075 13 6 0.0323 9.1276 1.2066 14 6 0.4962 10.4302 1.2121 15 6 0.7333 11.0856 0.0196 16 6 0.4955 10.4384 -1.1857 17 8 0.7227 11.0817 -2.3594 18 6 1.0628 12.3844 -2.2877 19 1 1.2230 12.8485 -1.3258 20 6 1.2068 13.1282 -3.4489 21 7 1.5381 14.3995 -3.3789 22 14 0.9290 12.3256 -5.1127 23 1 -0.4987 12.4638 -5.4968 24 1 1.7821 12.9894 -6.1310 25 1 1.2830 10.8857 -5.0330 26 6 0.0304 9.1296 -1.1879 27 7 1.1047 2.5988 0.0051 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.2675 1.5489 0.0014 32 1 4.6149 4.0032 0.0011 33 1 -0.6528 4.4313 0.0021 34 1 -1.3109 6.8869 0.8957 35 1 -1.3112 6.8898 -0.8842 36 1 -0.1488 8.6161 2.1404 37 1 0.6772 10.9344 2.1499 38 1 1.0999 12.1015 0.0247 39 1 1.6392 14.9197 -4.1913 40 1 -0.1516 8.6223 -2.1239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361894322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:35 Heat of formation + Delta-G solvation = 35.929491 kcal Electronic energy + Delta-G solvation = -25918.169584 eV Core-core repulsion = 22019.278985 eV Total energy + Delta-G solvation = -3898.890600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45497 -39.79062 -38.90594 -36.70138 -35.16916 -34.03634 -32.50463 -32.26361 -31.12035 -29.46158 -29.38921 -27.38956 -25.31077 -25.16100 -24.13512 -21.92199 -21.44298 -20.36301 -19.09166 -18.14181 -17.68956 -17.12629 -16.63838 -16.47624 -16.10202 -15.94382 -15.25960 -15.06191 -14.70923 -14.50039 -14.26895 -14.07549 -13.98620 -13.77676 -13.66433 -13.47978 -12.87229 -12.63121 -12.51701 -12.17763 -11.86952 -11.54398 -11.47090 -11.30027 -11.24824 -11.16881 -10.85643 -10.79955 -10.71287 -10.14442 -10.05371 -9.37290 -9.23619 -9.21773 -8.84771 -8.21100 -8.16093 -7.34808 -6.38498 -4.05099 0.58168 0.70258 0.92355 1.58229 1.94280 2.28492 2.51037 2.53585 3.24085 3.27108 3.43152 3.55859 3.90144 4.21800 4.26502 4.45160 4.58701 4.67614 4.69922 4.74842 4.83874 4.89517 5.06147 5.12735 5.16844 5.28634 5.35194 5.49597 5.67131 5.70081 5.83975 6.12423 6.14858 6.25693 6.49762 6.57029 6.77972 6.85182 7.09389 7.20868 7.32895 7.61370 7.83008 7.84206 8.06794 8.08602 8.96976 9.59782 10.69276 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002122 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.379239 B =13193.611324 C =13808.401653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 S -0.047 6.047 3 C 0.187 3.813 4 C -0.246 4.246 5 C 0.193 3.807 6 N -0.506 5.506 7 C 0.557 3.443 8 N -0.646 5.646 9 C 0.504 3.496 10 O -0.439 6.439 11 C -0.086 4.086 12 C -0.040 4.040 13 C -0.186 4.186 14 C -0.076 4.076 15 C -0.215 4.215 16 C 0.160 3.840 17 O -0.219 6.219 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.063 3.937 21 N -0.881 5.881 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.260 1.260 26 C -0.172 4.172 27 N -0.560 5.560 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.151 0.849 32 H 0.177 0.823 33 H 0.421 0.579 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.279 0.721 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.474 -28.633 8.505 30.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.190 5.810 3 C -0.071 4.071 4 C -0.277 4.277 5 C 0.025 3.975 6 N -0.227 5.227 7 C 0.198 3.802 8 N -0.297 5.297 9 C 0.289 3.711 10 O -0.303 6.303 11 C -0.126 4.126 12 C -0.041 4.041 13 C -0.205 4.205 14 C -0.094 4.094 15 C -0.234 4.234 16 C 0.108 3.892 17 O -0.124 6.124 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.140 4.140 21 N -0.519 5.519 22 Si 0.730 3.270 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.192 4.192 27 N -0.286 5.286 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.121 0.879 31 H 0.169 0.831 32 H 0.194 0.806 33 H 0.258 0.742 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.089 0.911 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.738 -28.402 8.141 29.673 hybrid contribution -0.654 0.167 -0.662 0.945 sum -3.391 -28.235 7.479 29.405 Atomic orbital electron populations 1.23479 0.93567 1.06310 1.07253 1.85855 1.08363 0.96393 1.90353 1.23237 0.91454 0.98659 0.93745 1.22322 0.97084 0.98163 1.10091 1.23187 0.98218 0.88878 0.87179 1.68630 0.97617 1.38964 1.17511 1.19486 0.86791 0.84593 0.89290 1.43528 1.07695 1.05742 1.72722 1.21189 0.92371 0.80787 0.76729 1.90889 1.23489 1.75365 1.40595 1.20569 0.95311 0.91563 1.05181 1.18586 1.00041 0.92250 0.93203 1.20419 1.08134 0.95846 0.96079 1.20738 0.97338 0.94263 0.97063 1.21312 1.08014 1.02172 0.91886 1.19000 0.92732 0.91548 0.85907 1.83568 1.76904 1.25334 1.26577 1.20761 1.47236 0.81478 0.96895 0.87635 1.24457 0.95849 0.94655 0.99072 1.69647 1.45846 1.06288 1.30087 0.86189 0.78524 0.80488 0.81760 1.19923 1.20804 1.18375 1.19937 1.08166 0.93801 0.97260 1.68056 1.34936 1.02263 1.23346 0.89064 0.89054 0.87854 0.83119 0.80628 0.74187 0.87743 0.87714 0.87665 0.87108 0.84939 0.91107 0.86777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.68 101.05 0.98 0.24 16 2 S -0.05 -0.34 22.74 -107.50 -2.44 -2.78 16 3 C 0.19 1.86 7.01 -16.49 -0.12 1.74 16 4 C -0.25 -2.23 9.94 -39.08 -0.39 -2.61 16 5 C 0.19 2.08 11.28 -17.31 -0.20 1.88 16 6 N -0.51 -7.36 7.87 -13.93 -0.11 -7.47 16 7 C 0.56 7.25 8.38 -322.33 -2.70 4.55 16 8 N -0.65 -7.21 5.40 -13.08 -0.07 -7.28 16 9 C 0.50 7.01 7.78 -10.98 -0.09 6.93 16 10 O -0.44 -8.28 14.23 5.57 0.08 -8.20 16 11 C -0.09 -1.01 5.83 -29.04 -0.17 -1.18 16 12 C -0.04 -0.68 4.37 -104.65 -0.46 -1.14 16 13 C -0.19 -3.17 9.70 -39.53 -0.38 -3.56 16 14 C -0.08 -1.42 10.04 -39.61 -0.40 -1.81 16 15 C -0.21 -4.77 9.17 -39.39 -0.36 -5.13 16 16 C 0.16 3.80 6.65 -39.11 -0.26 3.54 16 17 O -0.22 -5.91 8.59 0.05 0.00 -5.91 16 18 C -0.39 -11.14 9.95 30.89 0.31 -10.83 16 19 H 0.11 3.09 5.44 -52.49 -0.29 2.80 16 20 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 21 N -0.88 -25.76 13.96 55.48 0.77 -24.99 16 22 Si 0.90 22.07 28.62 -169.99 -4.86 17.21 16 23 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.17 -3.50 9.64 -39.40 -0.38 -3.88 16 27 N -0.56 -6.22 9.32 -12.61 -0.12 -6.33 16 28 H 0.09 0.52 8.13 -51.92 -0.42 0.10 16 29 H 0.09 0.54 8.14 -51.92 -0.42 0.11 16 30 H 0.10 0.34 8.14 -51.92 -0.42 -0.08 16 31 H 0.15 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.18 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.42 3.07 8.81 -40.82 -0.36 2.71 16 34 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 35 H 0.10 0.98 8.08 -51.93 -0.42 0.56 16 36 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.13 3.07 5.64 -52.49 -0.30 2.78 16 39 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 366.03 15.07 5.52 5.52 Total: -1.00 -35.66 366.03 -10.24 -45.90 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.30 Total: 3.91 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -4.71 Total: -9.57 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.48 Total: -46.07 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: 0.08 Total: -14.11 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -4.86 Total: 17.21 kcal Atomic # 16 Polarization: -0.34 SS G_CDS: -2.44 Total: -2.78 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.66 -10.24 -45.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361894322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.826 kcal (2) G-P(sol) polarization free energy of solvation -35.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds