Wall clock time and date at job start Wed Apr 1 2020 03:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80994 * 1 3 3 C 1.76200 * 99.99994 * 2 1 4 4 C 1.39764 * 120.49615 * 179.97438 * 3 2 1 5 5 C 1.38052 * 118.46159 * 180.02562 * 4 3 2 6 6 N 1.32545 * 119.29227 * 0.02562 * 5 4 3 7 7 C 1.32390 * 120.95224 * 359.97438 * 6 5 4 8 8 N 1.38935 * 119.16151 * 179.97438 * 7 6 5 9 9 C 1.34783 * 119.99844 * 359.97438 * 8 7 6 10 10 O 1.21268 * 119.99735 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99878 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.46970 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02075 * 12 11 9 14 14 C 1.38279 * 120.13490 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.07187 * 359.77180 * 14 13 12 16 16 C 1.38861 * 119.92847 * 0.50048 * 15 14 13 17 17 O 1.35751 * 120.06597 * 179.74703 * 16 15 14 18 18 C 1.34829 * 117.00376 * 354.17384 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38657 * 120.00083 * 185.03464 * 18 17 16 21 21 N 1.31555 * 119.99797 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99748 * 0.02562 * 20 18 17 23 23 H 1.48496 * 109.47410 * 90.00109 * 22 20 18 24 24 H 1.48504 * 109.46801 * 209.99865 * 22 20 18 25 25 H 1.48497 * 109.47495 * 329.99577 * 22 20 18 26 26 C 1.38073 * 119.96952 * 89.99515 * 12 11 9 27 27 N 1.32370 * 121.68081 * 0.25684 * 7 6 5 28 28 H 1.08997 * 109.47348 * 299.99941 * 1 2 3 29 29 H 1.08999 * 109.47363 * 59.99601 * 1 2 3 30 30 H 1.08998 * 109.47482 * 179.97438 * 1 2 3 31 31 H 1.07992 * 120.76842 * 359.97438 * 4 3 2 32 32 H 1.07999 * 120.35663 * 180.02562 * 5 4 3 33 33 H 0.97001 * 120.00345 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47386 * 59.99804 * 11 9 8 35 35 H 1.08997 * 109.47038 * 299.99640 * 11 9 8 36 36 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 37 37 H 1.07999 * 119.96467 * 180.02562 * 14 13 12 38 38 H 1.08001 * 120.03711 * 180.27572 * 15 14 13 39 39 H 0.96998 * 119.99749 * 179.97438 * 21 20 18 40 40 H 1.08001 * 120.03594 * 0.04940 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 6 3.4251 2.2246 0.0005 5 6 3.6164 3.5918 0.0011 6 7 2.5614 4.3942 0.0016 7 6 1.3321 3.9028 0.0010 8 7 0.2531 4.7781 0.0021 9 6 0.4651 6.1091 0.0042 10 8 1.5977 6.5427 0.0046 11 6 -0.7052 7.0585 0.0060 12 6 -0.2002 8.4783 0.0075 13 6 0.0323 9.1276 1.2066 14 6 0.4962 10.4302 1.2121 15 6 0.7333 11.0856 0.0196 16 6 0.4955 10.4384 -1.1857 17 8 0.7227 11.0817 -2.3594 18 6 1.0628 12.3844 -2.2877 19 1 1.2230 12.8485 -1.3258 20 6 1.2068 13.1282 -3.4489 21 7 1.5381 14.3995 -3.3789 22 14 0.9290 12.3256 -5.1127 23 1 -0.4987 12.4638 -5.4968 24 1 1.7821 12.9894 -6.1310 25 1 1.2830 10.8857 -5.0330 26 6 0.0304 9.1296 -1.1879 27 7 1.1047 2.5988 0.0051 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 4.2675 1.5489 0.0014 32 1 4.6149 4.0032 0.0011 33 1 -0.6528 4.4313 0.0021 34 1 -1.3109 6.8869 0.8957 35 1 -1.3112 6.8898 -0.8842 36 1 -0.1488 8.6161 2.1404 37 1 0.6772 10.9344 2.1499 38 1 1.0999 12.1015 0.0247 39 1 1.6392 14.9197 -4.1913 40 1 -0.1516 8.6223 -2.1239 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361894322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:34 Heat of formation + Delta-G solvation = 13.992269 kcal Electronic energy + Delta-G solvation = -25919.120854 eV Core-core repulsion = 22019.278985 eV Total energy + Delta-G solvation = -3899.841869 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.30604 -41.08479 -40.36126 -38.34399 -36.15454 -34.84992 -34.48622 -33.65187 -32.04792 -31.06936 -29.84544 -28.67558 -27.20447 -26.07724 -25.06005 -23.39747 -22.79333 -21.68940 -19.99331 -19.62674 -19.08137 -18.71797 -17.46557 -17.40855 -17.09997 -16.85985 -16.61217 -16.54246 -15.91953 -15.70121 -15.48968 -15.43719 -15.05793 -14.88304 -14.81774 -14.46613 -14.34188 -14.14950 -13.95220 -13.33887 -13.05752 -12.94332 -12.54469 -12.48218 -12.40108 -12.32151 -12.30176 -12.05863 -11.94170 -11.79081 -11.32069 -11.11432 -10.91182 -10.11863 -10.04243 -9.69097 -9.07301 -8.80950 -8.50686 -6.23229 -0.21216 -0.09537 0.27765 0.44854 0.69492 1.07758 1.28925 1.33354 1.50243 1.55875 1.61579 2.27093 2.72413 2.74770 3.02808 3.07494 3.18868 3.46971 3.68785 3.82501 4.06631 4.09573 4.24408 4.28779 4.33385 4.34493 4.40914 4.44627 4.54158 4.61978 4.70042 4.92458 4.96053 4.96911 5.23492 5.31785 5.38917 5.63452 5.71246 5.74652 5.77434 5.90865 6.04463 6.25135 6.83618 6.93260 7.22486 7.58678 8.61099 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.017525 B = 0.002122 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.379239 B =13193.611324 C =13808.401653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.027 6.027 3 C 0.167 3.833 4 C -0.236 4.236 5 C 0.177 3.823 6 N -0.552 5.552 7 C 0.535 3.465 8 N -0.631 5.631 9 C 0.510 3.490 10 O -0.500 6.500 11 C -0.080 4.080 12 C -0.031 4.031 13 C -0.167 4.167 14 C -0.079 4.079 15 C -0.238 4.238 16 C 0.117 3.883 17 O -0.247 6.247 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.923 5.923 22 Si 0.971 3.029 23 H -0.261 1.261 24 H -0.267 1.267 25 H -0.268 1.268 26 C -0.178 4.178 27 N -0.555 5.555 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.128 0.872 31 H 0.180 0.820 32 H 0.195 0.805 33 H 0.439 0.561 34 H 0.153 0.847 35 H 0.136 0.864 36 H 0.149 0.851 37 H 0.140 0.860 38 H 0.107 0.893 39 H 0.285 0.715 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.177 -32.955 9.475 34.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.210 5.790 3 C -0.091 4.091 4 C -0.266 4.266 5 C 0.011 3.989 6 N -0.274 5.274 7 C 0.176 3.824 8 N -0.283 5.283 9 C 0.296 3.704 10 O -0.368 6.368 11 C -0.119 4.119 12 C -0.032 4.032 13 C -0.186 4.186 14 C -0.097 4.097 15 C -0.257 4.257 16 C 0.069 3.931 17 O -0.155 6.155 18 C -0.475 4.475 19 H 0.097 0.903 20 C -0.190 4.190 21 N -0.564 5.564 22 Si 0.793 3.207 23 H -0.186 1.186 24 H -0.191 1.191 25 H -0.192 1.192 26 C -0.197 4.197 27 N -0.282 5.282 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.146 0.854 31 H 0.197 0.803 32 H 0.211 0.789 33 H 0.280 0.720 34 H 0.170 0.830 35 H 0.154 0.846 36 H 0.167 0.833 37 H 0.158 0.842 38 H 0.124 0.876 39 H 0.094 0.906 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.474 -32.799 9.149 34.343 hybrid contribution -0.162 1.151 -0.662 1.338 sum -4.636 -31.647 8.486 33.092 Atomic orbital electron populations 1.23583 0.92073 1.07846 1.07009 1.85830 1.10004 0.93689 1.89503 1.23834 0.91827 1.00087 0.93324 1.22637 0.97860 0.97886 1.08185 1.23589 0.98388 0.89683 0.87246 1.68568 0.98915 1.40852 1.19094 1.19687 0.86894 0.85442 0.90347 1.43256 1.08372 1.04849 1.71831 1.21458 0.91926 0.81625 0.75359 1.90885 1.25709 1.76482 1.43720 1.20689 0.94888 0.87219 1.09117 1.19136 0.97584 0.94711 0.91755 1.21022 1.04684 0.94835 0.98013 1.21110 0.96569 0.95264 0.96720 1.21332 1.09476 1.01606 0.93296 1.19601 0.94827 0.93116 0.85591 1.83507 1.79390 1.24338 1.28275 1.20706 1.47752 0.82738 0.96317 0.90253 1.25284 0.95796 0.95223 1.02656 1.69730 1.47823 1.07548 1.31305 0.85214 0.79182 0.78826 0.77444 1.18616 1.19121 1.19246 1.20282 1.07667 0.92453 0.99324 1.68123 1.35203 1.01531 1.23301 0.89162 0.89374 0.85420 0.80265 0.78850 0.72045 0.82981 0.84610 0.83303 0.84227 0.87551 0.90579 0.85943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.68 113.37 1.10 0.03 16 2 S -0.03 -0.32 22.74 -56.49 -1.28 -1.61 16 3 C 0.17 2.97 7.01 84.89 0.59 3.57 16 4 C -0.24 -3.84 9.94 22.59 0.22 -3.62 16 5 C 0.18 3.68 11.28 84.54 0.95 4.63 16 6 N -0.55 -15.79 7.87 -197.97 -1.56 -17.35 16 7 C 0.54 13.18 8.38 261.32 2.19 15.37 16 8 N -0.63 -12.49 5.40 -313.69 -1.69 -14.18 16 9 C 0.51 12.84 7.78 87.66 0.68 13.53 16 10 O -0.50 -18.37 14.23 -2.99 -0.04 -18.41 16 11 C -0.08 -1.51 5.83 29.10 0.17 -1.34 16 12 C -0.03 -0.97 4.37 -19.88 -0.09 -1.06 16 13 C -0.17 -5.14 9.70 22.30 0.22 -4.93 16 14 C -0.08 -2.86 10.04 22.25 0.22 -2.63 16 15 C -0.24 -11.06 9.17 22.39 0.21 -10.86 16 16 C 0.12 5.81 6.65 22.58 0.15 5.96 16 17 O -0.25 -14.10 8.59 -22.74 -0.20 -14.30 16 18 C -0.40 -24.44 9.95 67.92 0.68 -23.77 16 19 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 20 C 0.01 0.51 5.49 84.83 0.47 0.98 16 21 N -0.92 -56.55 13.96 21.61 0.30 -56.25 16 22 Si 0.97 47.00 28.62 68.60 1.96 48.96 16 23 H -0.26 -11.98 7.11 99.48 0.71 -11.27 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 26 C -0.18 -7.15 9.64 22.39 0.22 -6.94 16 27 N -0.56 -11.28 9.32 -193.81 -1.81 -13.08 16 28 H 0.09 0.77 8.13 -2.40 -0.02 0.75 16 29 H 0.09 0.80 8.14 -2.40 -0.02 0.78 16 30 H 0.13 0.39 8.14 -2.40 -0.02 0.37 16 31 H 0.18 1.73 8.06 -2.91 -0.02 1.70 16 32 H 0.19 2.93 8.06 -2.91 -0.02 2.91 16 33 H 0.44 4.88 8.81 -92.71 -0.82 4.06 16 34 H 0.15 1.54 8.09 -2.39 -0.02 1.52 16 35 H 0.14 1.85 8.08 -2.39 -0.02 1.83 16 36 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 37 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 38 H 0.11 5.41 5.64 -2.91 -0.02 5.40 16 39 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 40 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -84.64 366.03 3.95 -80.69 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.29 Total: 16.62 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 7.98 Total: -11.09 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.76 Total: -100.86 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.24 Total: -32.71 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.96 Total: 48.96 kcal Atomic # 16 Polarization: -0.32 SS G_CDS: -1.28 Total: -1.61 kcal Total: -84.64 3.95 -80.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361894322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.679 kcal (2) G-P(sol) polarization free energy of solvation -84.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds