Wall clock time and date at job start Wed Apr 1 2020 03:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76198 * 100.00033 * 2 1 4 4 N 1.32816 * 118.99795 * 359.97438 * 3 2 1 5 5 C 1.31964 * 121.06676 * 180.02562 * 4 3 2 6 6 C 1.39998 * 119.06909 * 359.97438 * 5 4 3 7 7 C 1.47238 * 120.90077 * 180.02562 * 6 5 4 8 8 O 1.21620 * 119.99860 * 179.97438 * 7 6 5 9 9 N 1.34772 * 119.99709 * 359.97438 * 7 6 5 10 10 C 1.46502 * 119.99479 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74799 * 269.72763 * 11 10 9 13 13 C 1.37617 * 120.24688 * 179.72120 * 12 11 10 14 14 C 1.40712 * 119.74401 * 0.56472 * 13 12 11 15 15 C 1.41401 * 120.24233 * 179.68273 * 14 13 12 16 16 H 1.08004 * 119.99690 * 204.40608 * 15 14 13 17 17 C 1.39941 * 120.00260 * 24.41058 * 15 14 13 18 18 N 1.30830 * 119.99775 * 17.84268 * 17 15 14 19 19 Si 1.86792 * 120.00234 * 197.84444 * 17 15 14 20 20 H 1.48503 * 109.47028 * 89.99974 * 19 17 15 21 21 H 1.48503 * 109.47457 * 209.99581 * 19 17 15 22 22 H 1.48494 * 109.47345 * 330.00315 * 19 17 15 23 23 C 1.40720 * 119.51442 * 359.70718 * 14 13 12 24 24 C 1.37619 * 119.74219 * 359.97438 * 23 14 13 25 25 C 1.40961 * 118.19798 * 0.02562 * 6 5 4 26 26 O 1.35275 * 120.57090 * 179.72398 * 25 6 5 27 27 N 1.32553 * 118.85588 * 359.97438 * 25 6 5 28 28 H 1.09000 * 109.47287 * 300.00076 * 1 2 3 29 29 H 1.08998 * 109.47221 * 60.00386 * 1 2 3 30 30 H 1.09000 * 109.46707 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.46340 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00501 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.47003 * 299.98631 * 10 9 7 34 34 H 1.08998 * 109.47542 * 59.99692 * 10 9 7 35 35 H 1.08003 * 119.87606 * 359.97438 * 12 11 10 36 36 H 1.08003 * 120.12794 * 180.27731 * 13 12 11 37 37 H 0.96996 * 119.99658 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.12825 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.87593 * 179.97438 * 24 23 14 40 40 H 0.96697 * 114.00612 * 89.99626 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0838 2.5710 -0.0005 5 6 1.2659 3.8780 -0.0010 6 6 2.5717 4.3829 -0.0005 7 6 2.8214 5.8339 -0.0005 8 8 3.9625 6.2546 0.0004 9 7 1.7854 6.6959 -0.0015 10 6 2.0338 8.1397 -0.0021 11 6 0.7188 8.8758 -0.0039 12 6 0.1226 9.2161 -1.2083 13 6 -1.0810 9.8832 -1.2220 14 6 -1.7006 10.2303 -0.0072 15 6 -2.9340 10.9217 -0.0089 16 1 -3.2170 11.5233 0.8422 17 6 -3.7881 10.8265 -1.1134 18 7 -3.6357 9.8549 -1.9762 19 14 -5.1456 12.0865 -1.3558 20 1 -4.6303 13.2196 -2.1657 21 1 -6.2885 11.4533 -2.0616 22 1 -5.5971 12.5884 -0.0332 23 6 -1.0835 9.8848 1.2093 24 6 0.1169 9.2119 1.1990 25 6 3.6409 3.4643 0.0000 26 8 4.9218 3.8995 -0.0050 27 7 3.3697 2.1669 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.4195 4.5488 -0.0019 32 1 0.8752 6.3604 -0.0027 33 1 2.6011 8.4111 0.8882 34 1 2.6024 8.4102 -0.8918 35 1 0.6025 8.9530 -2.1394 36 1 -1.5460 10.1434 -2.1614 37 1 -4.2275 9.7891 -2.7419 38 1 -1.5500 10.1467 2.1474 39 1 0.5927 8.9460 2.1313 40 1 5.2966 4.0294 0.8768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362595590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:07 Heat of formation + Delta-G solvation = -11.290000 kcal Electronic energy + Delta-G solvation = -25927.549026 eV Core-core repulsion = 22026.610835 eV Total energy + Delta-G solvation = -3900.938191 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.48664 -39.23304 -37.93239 -37.62031 -34.83724 -33.88745 -33.43470 -32.15016 -30.29797 -29.43551 -29.25973 -27.19297 -25.63799 -24.51944 -23.58122 -21.16102 -20.89597 -20.23957 -19.78812 -18.55383 -17.83448 -17.45880 -17.44877 -16.11444 -15.52666 -15.38633 -15.22147 -14.84665 -14.61135 -14.49313 -14.32701 -13.95018 -13.75857 -13.56959 -13.45105 -13.09957 -12.60073 -12.45954 -12.13310 -12.08346 -11.76058 -11.62923 -11.23644 -11.12261 -11.11214 -11.04432 -10.79076 -10.52370 -10.26682 -9.92177 -9.77808 -9.69788 -9.54937 -9.29536 -8.82523 -8.20242 -7.65095 -7.53245 -6.93764 -4.53513 -0.02795 0.59155 0.75635 1.71554 2.47422 2.66072 2.90750 2.95820 2.99603 3.01200 3.07413 3.39450 3.51265 3.80446 3.89505 4.16283 4.44723 4.51091 4.75017 4.79844 4.86438 5.13978 5.47218 5.52121 5.59673 5.72935 5.81592 6.14885 6.19187 6.27130 6.38021 6.64201 6.80063 6.91131 7.10637 7.13542 7.19140 7.37193 7.43893 7.57365 7.75730 7.88940 7.93638 8.12211 8.27576 8.47048 8.71991 8.79308 10.00105 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.002267 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.286212 B =12345.824647 C =13913.788562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S 0.018 5.982 3 C 0.330 3.670 4 N -0.533 5.533 5 C 0.214 3.786 6 C -0.265 4.265 7 C 0.561 3.439 8 O -0.530 6.530 9 N -0.710 5.710 10 C 0.186 3.814 11 C -0.249 4.249 12 C -0.081 4.081 13 C -0.169 4.169 14 C 0.117 3.883 15 C -0.457 4.457 16 H 0.080 0.920 17 C 0.076 3.924 18 N -0.786 5.786 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.277 1.277 22 H -0.261 1.261 23 C -0.230 4.230 24 C -0.069 4.069 25 C 0.432 3.568 26 O -0.450 6.450 27 N -0.528 5.528 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.182 0.818 32 H 0.398 0.602 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.283 0.717 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -15.330 3.321 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.318 4.318 2 S 0.253 5.747 3 C -0.045 4.045 4 N -0.253 5.253 5 C 0.045 3.955 6 C -0.278 4.278 7 C 0.345 3.655 8 O -0.408 6.408 9 N -0.361 5.361 10 C 0.065 3.935 11 C -0.251 4.251 12 C -0.100 4.100 13 C -0.189 4.189 14 C 0.114 3.886 15 C -0.486 4.486 16 H 0.098 0.902 17 C -0.143 4.143 18 N -0.411 5.411 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.250 4.250 24 C -0.088 4.088 25 C 0.240 3.760 26 O -0.258 6.258 27 N -0.256 5.256 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.199 0.801 32 H 0.234 0.766 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.106 0.894 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges 6.875 -17.086 2.522 18.589 hybrid contribution -1.735 2.407 0.216 2.975 sum 5.140 -14.679 2.738 15.792 Atomic orbital electron populations 1.23660 0.93628 1.06675 1.07795 1.85933 1.07236 0.92375 1.89169 1.25067 0.85873 1.01150 0.92392 1.68768 1.33587 1.04285 1.18613 1.23539 0.95541 0.91273 0.85184 1.22059 0.95515 0.96928 1.13257 1.17538 0.85730 0.84374 0.77819 1.90806 1.21261 1.78744 1.49943 1.46483 1.08578 1.07698 1.73365 1.20009 0.95688 0.76798 1.01016 1.18957 0.99045 1.13257 0.93874 1.20569 0.95613 0.98575 0.95196 1.21321 0.94692 1.04051 0.98800 1.17682 0.91716 0.88236 0.90941 1.19688 1.01384 1.25545 1.01940 0.90203 1.25958 0.98751 0.94888 0.94747 1.69812 1.34845 1.25716 1.10687 0.86277 0.79649 0.81010 0.79661 1.19130 1.20200 1.18511 1.20979 0.98543 1.08371 0.97068 1.20404 0.95162 0.97931 0.95262 1.19374 0.85539 0.85831 0.85216 1.84649 1.21715 1.85283 1.34162 1.68098 1.21909 1.16725 1.18905 0.88662 0.88667 0.87306 0.80084 0.76643 0.92067 0.92005 0.89350 0.86340 0.90634 0.88866 0.89354 0.72416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.61 101.05 0.97 0.01 16 2 S 0.02 0.17 22.89 -107.50 -2.46 -2.29 16 3 C 0.33 4.02 7.85 -90.58 -0.71 3.31 16 4 N -0.53 -6.26 9.09 -13.09 -0.12 -6.38 16 5 C 0.21 2.46 10.80 -16.84 -0.18 2.27 16 6 C -0.26 -3.48 5.92 -104.55 -0.62 -4.09 16 7 C 0.56 8.46 7.77 -12.61 -0.10 8.36 16 8 O -0.53 -9.43 15.30 -15.97 -0.24 -9.67 16 9 N -0.71 -10.45 5.50 -62.62 -0.34 -10.80 16 10 C 0.19 3.12 5.79 -5.19 -0.03 3.09 16 11 C -0.25 -4.84 5.27 -104.33 -0.55 -5.39 16 12 C -0.08 -1.71 9.67 -39.66 -0.38 -2.09 16 13 C -0.17 -4.07 8.70 -38.87 -0.34 -4.40 16 14 C 0.12 2.90 5.58 -106.82 -0.60 2.30 16 15 C -0.46 -11.35 9.05 -37.74 -0.34 -11.69 16 16 H 0.08 1.92 7.91 -52.48 -0.41 1.50 16 17 C 0.08 1.78 5.14 -17.34 -0.09 1.69 16 18 N -0.79 -19.00 10.95 55.55 0.61 -18.39 16 19 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 20 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 22 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 23 C -0.23 -5.19 9.80 -38.87 -0.38 -5.57 16 24 C -0.07 -1.38 9.67 -39.66 -0.38 -1.77 16 25 C 0.43 5.82 7.85 -16.21 -0.13 5.69 16 26 O -0.45 -5.73 11.79 -38.75 -0.46 -6.19 16 27 N -0.53 -7.11 10.40 -13.12 -0.14 -7.24 16 28 H 0.09 0.63 8.11 -51.92 -0.42 0.21 16 29 H 0.09 0.66 8.11 -51.92 -0.42 0.24 16 30 H 0.11 0.44 8.14 -51.92 -0.42 0.02 16 31 H 0.18 1.66 6.51 -52.49 -0.34 1.32 16 32 H 0.40 5.28 6.58 -40.82 -0.27 5.01 16 33 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 34 H 0.06 1.06 8.08 -51.93 -0.42 0.65 16 35 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 36 H 0.12 2.97 6.16 -52.48 -0.32 2.65 16 37 H 0.28 6.22 8.30 -40.82 -0.34 5.88 16 38 H 0.09 1.99 8.06 -52.49 -0.42 1.57 16 39 H 0.09 1.57 8.06 -52.49 -0.42 1.15 16 40 H 0.41 3.35 9.06 45.56 0.41 3.77 16 LS Contribution 364.49 15.07 5.49 5.49 Total: -1.00 -29.51 364.49 -9.99 -39.50 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.44 Total: 11.68 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -3.86 Total: -8.27 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: 0.01 Total: -42.82 kcal Atomic # 8 Polarization: -15.16 SS G_CDS: -0.70 Total: -15.86 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.46 Total: -2.29 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.51 -9.99 -39.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362595590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.209 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds