Wall clock time and date at job start Wed Apr 1 2020 03:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81004 * 1 3 3 C 1.76198 * 100.00033 * 2 1 4 4 N 1.32816 * 118.99795 * 359.97438 * 3 2 1 5 5 C 1.31964 * 121.06676 * 180.02562 * 4 3 2 6 6 C 1.39998 * 119.06909 * 359.97438 * 5 4 3 7 7 C 1.47238 * 120.90077 * 180.02562 * 6 5 4 8 8 O 1.21620 * 119.99860 * 179.97438 * 7 6 5 9 9 N 1.34772 * 119.99709 * 359.97438 * 7 6 5 10 10 C 1.46502 * 119.99479 * 180.02562 * 9 7 6 11 11 C 1.50706 * 109.47103 * 179.97438 * 10 9 7 12 12 C 1.38635 * 119.74799 * 269.72763 * 11 10 9 13 13 C 1.37617 * 120.24688 * 179.72120 * 12 11 10 14 14 C 1.40712 * 119.74401 * 0.56472 * 13 12 11 15 15 C 1.41401 * 120.24233 * 179.68273 * 14 13 12 16 16 H 1.08004 * 119.99690 * 204.40608 * 15 14 13 17 17 C 1.39941 * 120.00260 * 24.41058 * 15 14 13 18 18 N 1.30830 * 119.99775 * 17.84268 * 17 15 14 19 19 Si 1.86792 * 120.00234 * 197.84444 * 17 15 14 20 20 H 1.48503 * 109.47028 * 89.99974 * 19 17 15 21 21 H 1.48503 * 109.47457 * 209.99581 * 19 17 15 22 22 H 1.48494 * 109.47345 * 330.00315 * 19 17 15 23 23 C 1.40720 * 119.51442 * 359.70718 * 14 13 12 24 24 C 1.37619 * 119.74219 * 359.97438 * 23 14 13 25 25 C 1.40961 * 118.19798 * 0.02562 * 6 5 4 26 26 O 1.35275 * 120.57090 * 179.72398 * 25 6 5 27 27 N 1.32553 * 118.85588 * 359.97438 * 25 6 5 28 28 H 1.09000 * 109.47287 * 300.00076 * 1 2 3 29 29 H 1.08998 * 109.47221 * 60.00386 * 1 2 3 30 30 H 1.09000 * 109.46707 * 179.97438 * 1 2 3 31 31 H 1.07999 * 120.46340 * 179.97438 * 5 4 3 32 32 H 0.96998 * 120.00501 * 359.97438 * 9 7 6 33 33 H 1.09000 * 109.47003 * 299.98631 * 10 9 7 34 34 H 1.08998 * 109.47542 * 59.99692 * 10 9 7 35 35 H 1.08003 * 119.87606 * 359.97438 * 12 11 10 36 36 H 1.08003 * 120.12794 * 180.27731 * 13 12 11 37 37 H 0.96996 * 119.99658 * 180.02562 * 18 17 15 38 38 H 1.07999 * 120.12825 * 179.97438 * 23 14 13 39 39 H 1.07997 * 119.87593 * 179.97438 * 24 23 14 40 40 H 0.96697 * 114.00612 * 89.99626 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 1.0838 2.5710 -0.0005 5 6 1.2659 3.8780 -0.0010 6 6 2.5717 4.3829 -0.0005 7 6 2.8214 5.8339 -0.0005 8 8 3.9625 6.2546 0.0004 9 7 1.7854 6.6959 -0.0015 10 6 2.0338 8.1397 -0.0021 11 6 0.7188 8.8758 -0.0039 12 6 0.1226 9.2161 -1.2083 13 6 -1.0810 9.8832 -1.2220 14 6 -1.7006 10.2303 -0.0072 15 6 -2.9340 10.9217 -0.0089 16 1 -3.2170 11.5233 0.8422 17 6 -3.7881 10.8265 -1.1134 18 7 -3.6357 9.8549 -1.9762 19 14 -5.1456 12.0865 -1.3558 20 1 -4.6303 13.2196 -2.1657 21 1 -6.2885 11.4533 -2.0616 22 1 -5.5971 12.5884 -0.0332 23 6 -1.0835 9.8848 1.2093 24 6 0.1169 9.2119 1.1990 25 6 3.6409 3.4643 0.0000 26 8 4.9218 3.8995 -0.0050 27 7 3.3697 2.1669 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.4195 4.5488 -0.0019 32 1 0.8752 6.3604 -0.0027 33 1 2.6011 8.4111 0.8882 34 1 2.6024 8.4102 -0.8918 35 1 0.6025 8.9530 -2.1394 36 1 -1.5460 10.1434 -2.1614 37 1 -4.2275 9.7891 -2.7419 38 1 -1.5500 10.1467 2.1474 39 1 0.5927 8.9460 2.1313 40 1 5.2966 4.0294 0.8768 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362595590.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:06 Heat of formation + Delta-G solvation = -30.873575 kcal Electronic energy + Delta-G solvation = -25928.398233 eV Core-core repulsion = 22026.610835 eV Total energy + Delta-G solvation = -3901.787398 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44984 -40.47360 -39.39362 -38.75835 -36.32232 -35.21350 -34.62670 -33.21941 -31.85446 -31.15152 -29.82813 -28.69347 -26.76589 -25.59830 -24.97106 -22.88988 -22.11284 -21.83813 -20.71275 -19.49368 -19.23002 -19.02320 -18.35109 -17.19558 -17.07983 -16.62901 -16.26187 -15.98766 -15.93516 -15.59558 -15.34730 -15.29877 -15.26067 -14.76192 -14.23784 -14.19928 -13.81667 -13.61519 -13.59965 -13.44401 -13.41268 -12.83189 -12.72457 -12.60029 -12.47287 -12.09742 -12.05608 -11.77344 -11.50754 -11.27945 -11.21889 -11.11513 -10.95273 -10.67373 -10.09406 -9.38763 -9.27694 -8.96728 -8.66896 -6.36390 -0.99484 -0.32545 -0.02785 0.83777 1.08687 1.15274 1.39225 1.47592 1.51343 1.59386 2.08872 2.19288 2.21665 2.44174 2.75320 3.02787 3.24072 3.52219 3.66785 3.77214 4.18056 4.25166 4.33401 4.35369 4.38356 4.53182 4.68092 4.71080 4.82320 4.99889 5.06542 5.15227 5.34804 5.38469 5.44580 5.44952 5.69494 5.91908 6.09781 6.21097 6.32135 6.37168 6.45008 6.51901 6.69042 6.92672 7.01440 7.09535 8.29228 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013667 B = 0.002267 C = 0.002012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2048.286212 B =12345.824647 C =13913.788562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S 0.026 5.974 3 C 0.319 3.681 4 N -0.535 5.535 5 C 0.224 3.776 6 C -0.278 4.278 7 C 0.569 3.431 8 O -0.559 6.559 9 N -0.705 5.705 10 C 0.195 3.805 11 C -0.228 4.228 12 C -0.082 4.082 13 C -0.192 4.192 14 C 0.087 3.913 15 C -0.496 4.496 16 H 0.076 0.924 17 C 0.038 3.962 18 N -0.817 5.817 19 Si 0.978 3.022 20 H -0.264 1.264 21 H -0.268 1.268 22 H -0.259 1.259 23 C -0.243 4.243 24 C -0.065 4.065 25 C 0.430 3.570 26 O -0.463 6.463 27 N -0.547 5.547 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.204 0.796 32 H 0.407 0.593 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.289 0.711 38 H 0.098 0.902 39 H 0.118 0.882 40 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.400 -16.624 3.766 17.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.312 4.312 2 S 0.261 5.739 3 C -0.054 4.054 4 N -0.255 5.255 5 C 0.054 3.946 6 C -0.291 4.291 7 C 0.355 3.645 8 O -0.439 6.439 9 N -0.356 5.356 10 C 0.073 3.927 11 C -0.230 4.230 12 C -0.100 4.100 13 C -0.212 4.212 14 C 0.084 3.916 15 C -0.525 4.525 16 H 0.094 0.906 17 C -0.178 4.178 18 N -0.442 5.442 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.192 1.192 22 H -0.183 1.183 23 C -0.263 4.263 24 C -0.084 4.084 25 C 0.238 3.762 26 O -0.274 6.274 27 N -0.276 5.276 28 H 0.114 0.886 29 H 0.111 0.889 30 H 0.155 0.845 31 H 0.220 0.780 32 H 0.244 0.756 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.100 0.900 38 H 0.116 0.884 39 H 0.136 0.864 40 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 6.675 -18.416 2.987 19.815 hybrid contribution -1.541 2.611 0.121 3.034 sum 5.134 -15.805 3.108 16.907 Atomic orbital electron populations 1.23785 0.91268 1.08493 1.07672 1.85962 1.09765 0.90186 1.87950 1.25693 0.85678 1.02676 0.91403 1.68868 1.33238 1.04272 1.19075 1.23874 0.95502 0.91585 0.83616 1.21816 0.96236 0.95521 1.15543 1.17650 0.85067 0.85013 0.76799 1.90792 1.22362 1.79359 1.51347 1.46208 1.09136 1.06805 1.73433 1.19821 0.93855 0.77609 1.01447 1.19172 0.99304 1.11522 0.92961 1.20764 0.94763 0.97781 0.96732 1.21263 0.96054 1.05899 0.97988 1.18002 0.92387 0.89205 0.91990 1.19897 1.02471 1.27111 1.02998 0.90633 1.26708 1.00735 0.96315 0.94080 1.69855 1.36087 1.26997 1.11310 0.85251 0.76895 0.78390 0.79524 1.18907 1.19243 1.18256 1.21168 0.99607 1.08906 0.96607 1.20691 0.94245 0.96656 0.96784 1.19509 0.85771 0.86096 0.84829 1.84597 1.21712 1.85312 1.35776 1.68176 1.22625 1.16672 1.20120 0.88583 0.88881 0.84457 0.77955 0.75624 0.91241 0.92184 0.87797 0.88241 0.90046 0.88421 0.86361 0.70521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.61 113.37 1.09 -0.39 16 2 S 0.03 0.43 22.89 -56.49 -1.29 -0.86 16 3 C 0.32 7.32 7.85 180.34 1.42 8.73 16 4 N -0.54 -11.60 9.09 -195.33 -1.77 -13.37 16 5 C 0.22 4.72 10.80 85.10 0.92 5.63 16 6 C -0.28 -6.91 5.92 -19.82 -0.12 -7.03 16 7 C 0.57 16.24 7.77 86.61 0.67 16.91 16 8 O -0.56 -19.20 15.30 16.20 0.25 -18.95 16 9 N -0.70 -19.19 5.50 -470.29 -2.59 -21.78 16 10 C 0.19 6.07 5.79 85.63 0.50 6.57 16 11 C -0.23 -8.43 5.27 -19.67 -0.10 -8.54 16 12 C -0.08 -3.41 9.67 22.22 0.21 -3.19 16 13 C -0.19 -9.44 8.70 22.73 0.20 -9.24 16 14 C 0.09 4.38 5.58 -21.29 -0.12 4.26 16 15 C -0.50 -25.40 9.05 23.46 0.21 -25.19 16 16 H 0.08 3.76 7.91 -2.91 -0.02 3.74 16 17 C 0.04 1.80 5.14 85.25 0.44 2.24 16 18 N -0.82 -40.45 10.95 21.83 0.24 -40.21 16 19 Si 0.98 36.48 29.59 68.60 2.03 38.51 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 21 H -0.27 -9.49 7.11 99.48 0.71 -8.78 16 22 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 23 C -0.24 -10.94 9.80 22.73 0.22 -10.72 16 24 C -0.07 -2.50 9.67 22.22 0.21 -2.29 16 25 C 0.43 11.19 7.85 85.25 0.67 11.86 16 26 O -0.46 -11.52 11.79 -65.30 -0.77 -12.29 16 27 N -0.55 -14.20 10.40 -308.37 -3.21 -17.41 16 28 H 0.10 1.04 8.11 -2.40 -0.02 1.02 16 29 H 0.09 1.07 8.11 -2.40 -0.02 1.05 16 30 H 0.14 0.66 8.14 -2.40 -0.02 0.64 16 31 H 0.20 3.20 6.51 -2.91 -0.02 3.18 16 32 H 0.41 9.79 6.58 -92.71 -0.61 9.18 16 33 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 34 H 0.06 1.94 8.08 -2.39 -0.02 1.92 16 35 H 0.10 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.10 5.19 6.16 -2.91 -0.02 5.17 16 37 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 38 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 39 H 0.12 3.83 8.06 -2.91 -0.02 3.81 16 40 H 0.43 6.75 9.06 -74.06 -0.67 6.08 16 Total: -1.00 -64.21 364.49 -0.85 -65.06 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: -0.16 Total: 31.67 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 6.42 Total: -10.37 kcal Atomic # 7 Polarization: -85.43 SS G_CDS: -7.33 Total: -92.77 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.52 Total: -31.24 kcal Atomic # 14 Polarization: 36.48 SS G_CDS: 2.03 Total: 38.51 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -1.29 Total: -0.86 kcal Total: -64.21 -0.85 -65.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362595590.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.183 kcal (2) G-P(sol) polarization free energy of solvation -64.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds