Wall clock time and date at job start Wed Apr 1 2020 03:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76207 * 99.99618 * 2 1 4 4 N 1.32547 * 119.19405 * 359.97438 * 3 2 1 5 5 C 1.32711 * 120.63426 * 180.02562 * 4 3 2 6 6 O 1.35512 * 120.46119 * 180.02562 * 5 4 3 7 7 C 1.39457 * 119.07415 * 359.75498 * 5 4 3 8 8 C 1.38207 * 118.51877 * 0.48986 * 7 5 4 9 9 C 1.50704 * 120.36487 * 179.78827 * 8 7 5 10 10 N 1.46503 * 109.47255 * 94.71695 * 9 8 7 11 11 C 1.34770 * 119.99909 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00166 * 0.02562 * 11 10 9 13 13 C 1.47643 * 120.00284 * 179.72287 * 11 10 9 14 14 C 1.40016 * 119.89143 * 0.02562 * 13 11 10 15 15 C 1.36319 * 120.10494 * 179.71856 * 14 13 11 16 16 C 1.40890 * 119.88975 * 0.54786 * 15 14 13 17 17 C 1.41106 * 120.10117 * 179.69849 * 16 15 14 18 18 H 1.08001 * 119.99949 * 155.08699 * 17 16 15 19 19 C 1.40226 * 120.00296 * 335.08998 * 17 16 15 20 20 N 1.30647 * 119.99880 * 342.20926 * 19 17 16 21 21 Si 1.86797 * 120.00240 * 162.20684 * 19 17 16 22 22 H 1.48502 * 109.47322 * 94.66414 * 21 19 17 23 23 H 1.48502 * 109.47482 * 214.66350 * 21 19 17 24 24 H 1.48503 * 109.47032 * 334.66231 * 21 19 17 25 25 C 1.40884 * 119.79603 * 359.72327 * 16 15 14 26 26 C 1.36319 * 119.89064 * 359.97438 * 25 16 15 27 27 N 1.32446 * 119.27443 * 359.50314 * 8 7 5 28 28 H 1.08995 * 109.46693 * 60.00516 * 1 2 3 29 29 H 1.09001 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47046 * 299.99969 * 1 2 3 31 31 H 0.96701 * 114.00351 * 90.00416 * 6 5 4 32 32 H 1.08001 * 120.73959 * 180.24741 * 7 5 4 33 33 H 1.09002 * 109.46595 * 334.71996 * 9 8 7 34 34 H 1.08991 * 109.46995 * 214.72075 * 9 8 7 35 35 H 0.97000 * 119.99912 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.94986 * 359.97339 * 14 13 11 37 37 H 1.07998 * 120.05209 * 180.27528 * 15 14 13 38 38 H 0.96999 * 120.00104 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05972 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.94698 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0886 2.5729 -0.0005 5 6 1.2861 3.8852 -0.0010 6 8 0.2332 4.7383 -0.0010 7 6 2.5921 4.3740 0.0042 8 6 3.6358 3.4680 -0.0007 9 6 5.0635 3.9505 -0.0001 10 7 5.5640 3.9936 1.3761 11 6 6.8258 4.3981 1.6219 12 8 7.5487 4.7278 0.7015 13 6 7.3283 4.4473 3.0093 14 6 6.4920 4.0727 4.0680 15 6 6.9533 4.1111 5.3502 16 6 8.2701 4.5395 5.6101 17 6 8.7500 4.5870 6.9362 18 1 9.8102 4.5154 7.1297 19 6 7.8506 4.7271 8.0029 20 7 6.6368 5.1566 7.7817 21 14 8.3880 4.2996 9.7401 22 1 8.8574 5.5283 10.4295 23 1 7.2408 3.7216 10.4851 24 1 9.4931 3.3090 9.6867 25 6 9.1059 4.9209 4.5421 26 6 8.6377 4.8733 3.2627 27 7 3.3675 2.1710 0.0000 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.0722 4.9864 0.8823 32 1 2.7838 5.4369 0.0079 33 1 5.1097 4.9490 -0.4349 34 1 5.6775 3.2691 -0.5889 35 1 4.9871 3.7309 2.1103 36 1 5.4813 3.7490 3.8681 37 1 6.3090 3.8177 6.1658 38 1 6.0145 5.2531 8.5194 39 1 10.1158 5.2504 4.7365 40 1 9.2775 5.1659 2.4432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363459737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:52 Heat of formation + Delta-G solvation = -12.103834 kcal Electronic energy + Delta-G solvation = -25805.458647 eV Core-core repulsion = 21904.485165 eV Total energy + Delta-G solvation = -3900.973481 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.45417 -39.15789 -38.05525 -37.17186 -35.20656 -33.90866 -33.14235 -31.87096 -30.31489 -29.48560 -29.31398 -27.55755 -25.63923 -25.01265 -23.10560 -21.84185 -20.95682 -19.79660 -19.46051 -18.34855 -17.58583 -17.55846 -16.92310 -16.16327 -15.94481 -15.60508 -15.34829 -14.85275 -14.62113 -14.40225 -14.15550 -13.95962 -13.68908 -13.41924 -13.21571 -12.87775 -12.77922 -12.65138 -12.38560 -12.12670 -11.95543 -11.41601 -11.40240 -11.28821 -11.00550 -10.95535 -10.71841 -10.66955 -10.40659 -10.09639 -9.75705 -9.59787 -9.38273 -9.05516 -8.76156 -8.12878 -7.75751 -7.58152 -7.07493 -4.63760 0.32884 0.50265 0.85822 1.75149 2.18262 2.87636 2.88573 2.92508 2.98797 3.00553 3.19558 3.64999 3.70985 3.80968 3.93003 4.22835 4.52483 4.57632 4.76545 4.81699 4.85214 4.96235 5.44126 5.47011 5.49949 5.56638 5.73828 5.98308 6.02358 6.28468 6.48986 6.71986 6.75341 6.79177 6.91383 6.99741 7.09286 7.39793 7.46246 7.59784 7.73830 7.82569 8.03197 8.11537 8.36252 8.59539 8.71531 8.96724 9.84554 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002351 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.828002 B =11909.047461 C =12860.094592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S 0.017 5.983 3 C 0.318 3.682 4 N -0.546 5.546 5 C 0.377 3.623 6 O -0.474 6.474 7 C -0.231 4.231 8 C 0.194 3.806 9 C 0.174 3.826 10 N -0.735 5.735 11 C 0.576 3.424 12 O -0.571 6.571 13 C -0.284 4.284 14 C -0.061 4.061 15 C -0.178 4.178 16 C 0.129 3.871 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.074 3.926 20 N -0.771 5.771 21 Si 0.913 3.087 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.257 1.257 25 C -0.238 4.238 26 C -0.020 4.020 27 N -0.491 5.491 28 H 0.090 0.910 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.411 0.589 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.399 0.601 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.099 0.901 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.723 -5.096 -8.897 17.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.251 5.749 3 C -0.057 4.057 4 N -0.276 5.276 5 C 0.186 3.814 6 O -0.282 6.282 7 C -0.259 4.259 8 C 0.046 3.954 9 C 0.050 3.950 10 N -0.390 5.390 11 C 0.372 3.628 12 O -0.453 6.453 13 C -0.288 4.288 14 C -0.080 4.080 15 C -0.197 4.197 16 C 0.126 3.874 17 C -0.468 4.468 18 H 0.104 0.896 19 C -0.147 4.147 20 N -0.395 5.395 21 Si 0.736 3.264 22 H -0.192 1.192 23 H -0.197 1.197 24 H -0.180 1.180 25 C -0.258 4.258 26 C -0.039 4.039 27 N -0.210 5.210 28 H 0.109 0.891 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.271 0.729 32 H 0.177 0.823 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.234 0.766 36 H 0.104 0.896 37 H 0.137 0.863 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.892 -6.744 -10.038 18.419 hybrid contribution -1.245 1.918 1.618 2.801 sum -15.137 -4.826 -8.421 17.982 Atomic orbital electron populations 1.23598 0.94326 1.06464 1.07273 1.86053 1.06473 0.92382 1.89999 1.24825 0.86030 1.00400 0.94493 1.68255 1.36075 1.04223 1.19022 1.19335 0.86344 0.85971 0.89702 1.84708 1.48106 1.60821 1.34566 1.22833 0.92467 1.03616 1.06980 1.21743 0.96759 0.87796 0.89133 1.20034 0.86549 1.01787 0.86674 1.45787 1.15213 1.71256 1.06747 1.18584 0.79594 0.74835 0.89831 1.90649 1.56811 1.51092 1.46748 1.18817 0.97285 1.22750 0.89995 1.20445 0.96281 0.97972 0.93349 1.20963 0.97803 1.05979 0.94956 1.17790 0.91466 0.85450 0.92706 1.19859 0.95185 1.41258 0.90536 0.89648 1.26108 0.94261 0.91924 1.02405 1.69742 1.05734 1.28826 1.35151 0.86211 0.79822 0.79992 0.80365 1.19212 1.19729 1.18037 1.20721 1.00553 1.11964 0.92554 1.20361 0.93382 0.94177 0.96021 1.68400 1.20649 1.16597 1.15306 0.89079 0.87428 0.89046 0.72914 0.82292 0.89364 0.89226 0.76621 0.89581 0.86259 0.90242 0.88301 0.87990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.62 101.05 0.97 -0.06 16 2 S 0.02 0.18 22.89 -107.50 -2.46 -2.29 16 3 C 0.32 4.04 7.85 -90.87 -0.71 3.33 16 4 N -0.55 -6.49 9.16 -13.49 -0.12 -6.61 16 5 C 0.38 4.05 7.83 -16.72 -0.13 3.92 16 6 O -0.47 -3.96 13.57 -18.23 -0.25 -4.21 16 7 C -0.23 -2.46 9.78 -39.14 -0.38 -2.85 16 8 C 0.19 2.45 6.18 -82.34 -0.51 1.95 16 9 C 0.17 2.41 6.02 -5.19 -0.03 2.37 16 10 N -0.74 -12.09 5.50 -62.49 -0.34 -12.44 16 11 C 0.58 11.92 7.76 -12.42 -0.10 11.82 16 12 O -0.57 -13.14 16.32 5.29 0.09 -13.05 16 13 C -0.28 -6.37 5.89 -104.73 -0.62 -6.98 16 14 C -0.06 -1.34 9.47 -39.61 -0.38 -1.72 16 15 C -0.18 -4.30 8.63 -39.27 -0.34 -4.64 16 16 C 0.13 3.24 5.57 -106.80 -0.60 2.65 16 17 C -0.44 -10.81 9.04 -37.75 -0.34 -11.15 16 18 H 0.09 2.00 7.91 -52.49 -0.42 1.58 16 19 C 0.07 1.71 5.13 -17.31 -0.09 1.62 16 20 N -0.77 -18.18 10.97 55.56 0.61 -17.57 16 21 Si 0.91 17.01 29.60 -169.99 -5.03 11.98 16 22 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 23 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 24 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 25 C -0.24 -5.68 9.73 -39.27 -0.38 -6.07 16 26 C -0.02 -0.47 9.52 -39.61 -0.38 -0.84 16 27 N -0.49 -6.82 10.33 -9.74 -0.10 -6.92 16 28 H 0.09 0.66 8.11 -51.92 -0.42 0.24 16 29 H 0.11 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.09 0.66 8.11 -51.92 -0.42 0.24 16 31 H 0.41 1.40 9.06 45.56 0.41 1.81 16 32 H 0.16 1.36 8.06 -52.49 -0.42 0.93 16 33 H 0.09 1.12 8.06 -51.93 -0.42 0.70 16 34 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.40 6.16 6.47 -40.82 -0.26 5.90 16 36 H 0.09 1.62 6.37 -52.49 -0.33 1.29 16 37 H 0.12 2.93 6.17 -52.49 -0.32 2.60 16 38 H 0.29 6.06 8.29 -40.82 -0.34 5.72 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 40 H 0.10 2.27 7.63 -52.49 -0.40 1.87 16 LS Contribution 366.29 15.07 5.52 5.52 Total: -1.00 -30.56 366.29 -9.51 -40.07 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -3.41 Total: 12.15 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -4.01 Total: -6.65 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 0.04 Total: -43.53 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.16 Total: -17.26 kcal Atomic # 14 Polarization: 17.01 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -2.46 Total: -2.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.56 -9.51 -40.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363459737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.971 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds