Wall clock time and date at job start Wed Apr 1 2020 03:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81007 * 1 3 3 C 1.76207 * 99.99618 * 2 1 4 4 N 1.32547 * 119.19405 * 359.97438 * 3 2 1 5 5 C 1.32711 * 120.63426 * 180.02562 * 4 3 2 6 6 O 1.35512 * 120.46119 * 180.02562 * 5 4 3 7 7 C 1.39457 * 119.07415 * 359.75498 * 5 4 3 8 8 C 1.38207 * 118.51877 * 0.48986 * 7 5 4 9 9 C 1.50704 * 120.36487 * 179.78827 * 8 7 5 10 10 N 1.46503 * 109.47255 * 94.71695 * 9 8 7 11 11 C 1.34770 * 119.99909 * 180.02562 * 10 9 8 12 12 O 1.21588 * 120.00166 * 0.02562 * 11 10 9 13 13 C 1.47643 * 120.00284 * 179.72287 * 11 10 9 14 14 C 1.40016 * 119.89143 * 0.02562 * 13 11 10 15 15 C 1.36319 * 120.10494 * 179.71856 * 14 13 11 16 16 C 1.40890 * 119.88975 * 0.54786 * 15 14 13 17 17 C 1.41106 * 120.10117 * 179.69849 * 16 15 14 18 18 H 1.08001 * 119.99949 * 155.08699 * 17 16 15 19 19 C 1.40226 * 120.00296 * 335.08998 * 17 16 15 20 20 N 1.30647 * 119.99880 * 342.20926 * 19 17 16 21 21 Si 1.86797 * 120.00240 * 162.20684 * 19 17 16 22 22 H 1.48502 * 109.47322 * 94.66414 * 21 19 17 23 23 H 1.48502 * 109.47482 * 214.66350 * 21 19 17 24 24 H 1.48503 * 109.47032 * 334.66231 * 21 19 17 25 25 C 1.40884 * 119.79603 * 359.72327 * 16 15 14 26 26 C 1.36319 * 119.89064 * 359.97438 * 25 16 15 27 27 N 1.32446 * 119.27443 * 359.50314 * 8 7 5 28 28 H 1.08995 * 109.46693 * 60.00516 * 1 2 3 29 29 H 1.09001 * 109.46678 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47046 * 299.99969 * 1 2 3 31 31 H 0.96701 * 114.00351 * 90.00416 * 6 5 4 32 32 H 1.08001 * 120.73959 * 180.24741 * 7 5 4 33 33 H 1.09002 * 109.46595 * 334.71996 * 9 8 7 34 34 H 1.08991 * 109.46995 * 214.72075 * 9 8 7 35 35 H 0.97000 * 119.99912 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.94986 * 359.97339 * 14 13 11 37 37 H 1.07998 * 120.05209 * 180.27528 * 15 14 13 38 38 H 0.96999 * 120.00104 * 179.97438 * 20 19 17 39 39 H 1.07998 * 120.05972 * 179.97438 * 25 16 15 40 40 H 1.07998 * 119.94698 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 7 1.0886 2.5729 -0.0005 5 6 1.2861 3.8852 -0.0010 6 8 0.2332 4.7383 -0.0010 7 6 2.5921 4.3740 0.0042 8 6 3.6358 3.4680 -0.0007 9 6 5.0635 3.9505 -0.0001 10 7 5.5640 3.9936 1.3761 11 6 6.8258 4.3981 1.6219 12 8 7.5487 4.7278 0.7015 13 6 7.3283 4.4473 3.0093 14 6 6.4920 4.0727 4.0680 15 6 6.9533 4.1111 5.3502 16 6 8.2701 4.5395 5.6101 17 6 8.7500 4.5870 6.9362 18 1 9.8102 4.5154 7.1297 19 6 7.8506 4.7271 8.0029 20 7 6.6368 5.1566 7.7817 21 14 8.3880 4.2996 9.7401 22 1 8.8574 5.5283 10.4295 23 1 7.2408 3.7216 10.4851 24 1 9.4931 3.3090 9.6867 25 6 9.1059 4.9209 4.5421 26 6 8.6377 4.8733 3.2627 27 7 3.3675 2.1710 0.0000 28 1 -0.3632 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.0722 4.9864 0.8823 32 1 2.7838 5.4369 0.0079 33 1 5.1097 4.9490 -0.4349 34 1 5.6775 3.2691 -0.5889 35 1 4.9871 3.7309 2.1103 36 1 5.4813 3.7490 3.8681 37 1 6.3090 3.8177 6.1658 38 1 6.0145 5.2531 8.5194 39 1 10.1158 5.2504 4.7365 40 1 9.2775 5.1659 2.4432 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363459737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:51 Heat of formation + Delta-G solvation = -33.985344 kcal Electronic energy + Delta-G solvation = -25806.407500 eV Core-core repulsion = 21904.485165 eV Total energy + Delta-G solvation = -3901.922335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.33729 -40.76584 -39.00897 -38.71978 -36.43499 -35.67315 -34.29351 -32.83035 -31.98242 -31.30068 -29.94690 -28.83761 -27.24088 -25.88348 -24.22779 -23.39465 -22.74498 -21.36231 -20.34265 -19.39034 -19.29908 -18.47141 -18.25422 -17.39761 -16.97933 -16.96545 -16.50601 -16.02469 -15.79630 -15.73691 -15.41428 -15.27338 -15.04337 -14.51302 -14.36058 -14.22655 -14.01249 -13.86833 -13.65515 -13.45395 -13.27960 -13.16748 -12.84621 -12.63671 -12.36993 -12.18115 -11.90945 -11.77484 -11.48691 -11.38088 -11.23844 -11.11762 -10.78176 -10.61194 -10.19394 -9.57753 -9.41224 -8.91856 -8.80062 -6.48291 -0.54906 -0.36736 0.06553 0.42931 1.09731 1.15349 1.38518 1.42398 1.54905 1.98272 2.10148 2.17890 2.33068 2.55273 2.77453 2.81526 3.34877 3.69043 3.74760 3.93671 4.10513 4.22024 4.28762 4.30293 4.34805 4.45541 4.47231 4.58318 4.87854 4.92555 4.93364 5.02859 5.15047 5.29252 5.37163 5.58531 5.62676 5.80952 5.92810 5.99424 6.22540 6.39511 6.53375 6.57091 6.59175 6.76978 6.88405 7.35619 8.15251 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.002351 C = 0.002177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.828002 B =11909.047461 C =12860.094592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.001 6.001 3 C 0.305 3.695 4 N -0.550 5.550 5 C 0.380 3.620 6 O -0.474 6.474 7 C -0.223 4.223 8 C 0.184 3.816 9 C 0.178 3.822 10 N -0.719 5.719 11 C 0.579 3.421 12 O -0.597 6.597 13 C -0.292 4.292 14 C -0.053 4.053 15 C -0.198 4.198 16 C 0.102 3.898 17 C -0.472 4.472 18 H 0.086 0.914 19 C 0.038 3.962 20 N -0.797 5.797 21 Si 0.986 3.014 22 H -0.261 1.261 23 H -0.262 1.262 24 H -0.258 1.258 25 C -0.252 4.252 26 C -0.030 4.030 27 N -0.518 5.518 28 H 0.089 0.911 29 H 0.134 0.866 30 H 0.091 0.909 31 H 0.433 0.567 32 H 0.182 0.818 33 H 0.104 0.896 34 H 0.080 0.920 35 H 0.405 0.595 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.689 -5.210 -8.541 19.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.233 5.767 3 C -0.070 4.070 4 N -0.280 5.280 5 C 0.189 3.811 6 O -0.285 6.285 7 C -0.250 4.250 8 C 0.036 3.964 9 C 0.054 3.946 10 N -0.372 5.372 11 C 0.373 3.627 12 O -0.481 6.481 13 C -0.296 4.296 14 C -0.072 4.072 15 C -0.217 4.217 16 C 0.099 3.901 17 C -0.499 4.499 18 H 0.104 0.896 19 C -0.181 4.181 20 N -0.421 5.421 21 Si 0.806 3.194 22 H -0.185 1.185 23 H -0.186 1.186 24 H -0.181 1.181 25 C -0.272 4.272 26 C -0.049 4.049 27 N -0.238 5.238 28 H 0.108 0.892 29 H 0.153 0.847 30 H 0.110 0.890 31 H 0.297 0.703 32 H 0.199 0.801 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.241 0.759 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.905 -6.854 -9.685 19.843 hybrid contribution -0.782 1.966 1.401 2.537 sum -16.687 -4.888 -8.284 19.261 Atomic orbital electron populations 1.23663 0.91426 1.08164 1.07140 1.86085 1.09666 0.91389 1.89607 1.25131 0.85846 1.01402 0.94664 1.68317 1.35753 1.04751 1.19193 1.19483 0.86993 0.85936 0.88695 1.84679 1.47230 1.60089 1.36514 1.22991 0.91895 1.04370 1.05783 1.21539 0.96366 0.88012 0.90467 1.20098 0.87304 1.02550 0.84697 1.45584 1.13793 1.69447 1.08394 1.18305 0.80682 0.74993 0.88725 1.90635 1.57880 1.52435 1.47127 1.19100 0.97158 1.22043 0.91334 1.20662 0.97494 0.96653 0.92356 1.20987 0.97740 1.07302 0.95678 1.18135 0.92292 0.86201 0.93495 1.20121 0.95756 1.42806 0.91251 0.89613 1.26917 0.94046 0.91084 1.06038 1.69759 1.06665 1.28734 1.36908 0.85123 0.79488 0.79716 0.75101 1.18534 1.18620 1.18139 1.20868 1.00994 1.12519 0.92785 1.20523 0.94135 0.94369 0.95915 1.68352 1.21589 1.17367 1.16445 0.89182 0.84749 0.89043 0.70322 0.80056 0.87778 0.90216 0.75891 0.86555 0.87003 0.89193 0.87654 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.63 9.62 113.37 1.09 -0.54 16 2 S 0.00 -0.02 22.89 -56.49 -1.29 -1.32 16 3 C 0.30 7.45 7.85 180.44 1.42 8.86 16 4 N -0.55 -12.15 9.16 -309.33 -2.83 -14.99 16 5 C 0.38 7.31 7.83 84.85 0.66 7.97 16 6 O -0.47 -6.58 13.57 -88.14 -1.20 -7.78 16 7 C -0.22 -4.24 9.78 22.56 0.22 -4.02 16 8 C 0.18 4.40 6.18 42.46 0.26 4.66 16 9 C 0.18 4.69 6.02 85.63 0.52 5.20 16 10 N -0.72 -22.77 5.50 -469.89 -2.58 -25.36 16 11 C 0.58 23.59 7.76 86.73 0.67 24.27 16 12 O -0.60 -27.26 16.32 -3.99 -0.07 -27.33 16 13 C -0.29 -13.07 5.89 -19.93 -0.12 -13.19 16 14 C -0.05 -2.29 9.47 22.25 0.21 -2.08 16 15 C -0.20 -9.69 8.63 22.47 0.19 -9.50 16 16 C 0.10 5.24 5.57 -21.28 -0.12 5.13 16 17 C -0.47 -23.60 9.04 23.46 0.21 -23.39 16 18 H 0.09 4.11 7.91 -2.91 -0.02 4.09 16 19 C 0.04 1.76 5.13 85.35 0.44 2.19 16 20 N -0.80 -37.55 10.97 21.87 0.24 -37.31 16 21 Si 0.99 34.36 29.60 68.60 2.03 36.39 16 22 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 23 H -0.26 -8.62 7.11 99.48 0.71 -7.91 16 24 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 25 C -0.25 -12.34 9.73 22.47 0.22 -12.12 16 26 C -0.03 -1.42 9.52 22.25 0.21 -1.21 16 27 N -0.52 -14.00 10.33 -184.72 -1.91 -15.91 16 28 H 0.09 1.14 8.11 -2.40 -0.02 1.12 16 29 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.14 8.11 -2.40 -0.02 1.12 16 31 H 0.43 1.62 9.06 -74.06 -0.67 0.95 16 32 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.10 2.45 8.06 -2.39 -0.02 2.43 16 34 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.40 11.86 6.47 -92.71 -0.60 11.27 16 36 H 0.12 4.22 6.37 -2.91 -0.02 4.20 16 37 H 0.11 5.57 6.17 -2.91 -0.02 5.56 16 38 H 0.30 12.38 8.29 -92.71 -0.77 11.61 16 39 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 40 H 0.11 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -66.29 366.29 -1.66 -67.95 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.14 Total: 33.40 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: 6.09 Total: -7.76 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -7.09 Total: -93.57 kcal Atomic # 8 Polarization: -33.84 SS G_CDS: -1.26 Total: -35.10 kcal Atomic # 14 Polarization: 34.36 SS G_CDS: 2.03 Total: 36.39 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -1.29 Total: -1.32 kcal Total: -66.29 -1.66 -67.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363459737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.969 kcal (2) G-P(sol) polarization free energy of solvation -66.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds