Wall clock time and date at job start Wed Apr 1 2020 02:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34131 * 125.70152 * 2 1 4 4 C 1.38450 * 107.36559 * 180.02562 * 3 2 1 5 5 C 1.46679 * 126.47518 * 179.97438 * 4 3 2 6 6 O 1.21315 * 119.99397 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00127 * 179.97438 * 5 4 3 8 8 N 1.46492 * 109.47008 * 180.02562 * 7 5 4 9 9 C 1.34784 * 120.00217 * 180.02562 * 8 7 5 10 10 O 1.21552 * 119.99611 * 359.97438 * 9 8 7 11 11 C 1.47860 * 119.99972 * 179.97438 * 9 8 7 12 12 C 1.39661 * 120.10534 * 359.97438 * 11 9 8 13 13 C 1.38047 * 120.04191 * 180.02562 * 12 11 9 14 14 C 1.38176 * 120.23812 * 359.67598 * 13 12 11 15 15 C 1.39179 * 120.20540 * 0.60009 * 14 13 12 16 16 S 1.76194 * 120.02163 * 179.69520 * 15 14 13 17 17 C 1.76196 * 100.00182 * 265.25136 * 16 15 14 18 18 H 1.08000 * 120.00393 * 5.12593 * 17 16 15 19 19 C 1.38736 * 120.00006 * 185.12109 * 17 16 15 20 20 N 1.31616 * 119.99932 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 119.99686 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46964 * 60.00073 * 21 19 17 23 23 H 1.48496 * 109.46794 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46962 * 299.99839 * 21 19 17 25 25 C 1.38875 * 119.95687 * 359.42658 * 15 14 13 26 26 C 1.41549 * 107.05387 * 0.26057 * 4 3 2 27 27 N 1.30378 * 107.98152 * 359.55849 * 26 4 3 28 28 H 1.08999 * 109.47497 * 89.99759 * 1 2 3 29 29 H 1.09004 * 109.46922 * 210.00414 * 1 2 3 30 30 H 1.09005 * 109.47024 * 329.99644 * 1 2 3 31 31 H 1.07997 * 126.31646 * 0.02562 * 3 2 1 32 32 H 1.09005 * 109.46791 * 60.00154 * 7 5 4 33 33 H 1.09002 * 109.47038 * 300.00080 * 7 5 4 34 34 H 0.96996 * 120.00373 * 359.97438 * 8 7 5 35 35 H 1.08002 * 119.98248 * 0.02562 * 12 11 9 36 36 H 1.07993 * 119.87788 * 179.97438 * 13 12 11 37 37 H 1.08006 * 119.89818 * 180.31471 * 14 13 12 38 38 H 0.97004 * 119.99833 * 179.97438 * 20 19 17 39 39 H 1.08000 * 120.12505 * 180.25503 * 25 15 14 40 40 H 1.08001 * 126.01544 * 179.69887 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2478 1.0892 0.0000 4 6 3.5620 0.6537 -0.0006 5 6 4.7607 1.4990 -0.0013 6 8 4.6509 2.7071 -0.0010 7 6 6.1286 0.8666 -0.0013 8 7 7.1513 1.9154 -0.0015 9 6 8.4575 1.5830 -0.0021 10 8 8.7868 0.4129 -0.0020 11 6 9.4898 2.6416 -0.0028 12 6 9.1138 3.9867 -0.0035 13 6 10.0787 4.9740 -0.0048 14 6 11.4188 4.6373 0.0014 15 6 11.8049 3.3002 -0.0037 16 16 13.5151 2.8764 -0.0039 17 6 13.7791 2.6704 -1.7337 18 1 12.9865 2.8964 -2.4317 19 6 15.0052 2.2179 -2.1993 20 7 15.9713 1.9430 -1.3488 21 14 15.2852 2.0002 -4.0334 22 1 15.0992 3.3034 -4.7206 23 1 16.6667 1.5089 -4.2682 24 1 14.3121 1.0146 -4.5691 25 6 10.8412 2.3001 -0.0029 26 6 3.5303 -0.7614 -0.0071 27 7 2.2815 -1.1361 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 1.9143 2.1165 0.0004 32 1 6.2425 0.2473 -0.8911 33 1 6.2430 0.2482 0.8890 34 1 6.8886 2.8491 -0.0020 35 1 8.0676 4.2546 -0.0031 36 1 9.7850 6.0132 -0.0057 37 1 12.1690 5.4143 0.0055 38 1 16.8284 1.6263 -1.6743 39 1 11.1378 1.2617 -0.0027 40 1 4.3894 -1.4158 -0.0138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365053588.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:56 Heat of formation + Delta-G solvation = 33.404706 kcal Electronic energy + Delta-G solvation = -25169.978541 eV Core-core repulsion = 21270.978458 eV Total energy + Delta-G solvation = -3899.000083 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.87631 -40.16114 -39.10481 -37.70942 -34.57189 -34.04053 -32.47878 -31.33445 -30.88452 -30.49167 -28.88572 -26.96454 -25.53787 -23.80253 -22.81149 -22.11784 -21.48855 -20.44284 -20.03923 -18.52067 -17.62440 -17.26961 -16.34250 -16.31288 -15.90154 -15.70450 -15.45056 -15.17678 -14.85602 -14.82218 -14.43913 -14.38124 -14.17209 -13.59720 -13.41185 -13.31512 -13.27884 -13.14620 -12.89838 -12.72955 -12.15999 -11.61118 -11.49842 -11.13317 -11.09351 -11.04620 -10.68154 -10.20269 -10.17693 -9.97573 -9.79000 -9.31895 -9.19530 -9.12435 -8.98017 -8.54931 -7.99216 -6.68063 -6.25541 -3.99358 0.76294 1.19774 1.51551 1.71281 1.78104 2.66670 2.96064 3.06000 3.23737 3.25935 3.28915 3.49345 3.62725 4.05160 4.12368 4.16134 4.29705 4.46898 4.51091 4.71248 4.76311 4.86577 4.92049 5.10654 5.13715 5.14683 5.23622 5.28273 5.32128 5.50782 5.77579 5.88049 5.91552 6.02638 6.18916 6.26099 6.30384 6.62762 6.68936 6.95695 6.96931 7.16463 7.23178 7.49176 7.60338 8.27056 8.35519 9.20123 10.81069 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.001882 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.054919 B =14872.401058 C =15560.054466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.362 5.362 3 C 0.133 3.867 4 C -0.324 4.324 5 C 0.430 3.570 6 O -0.468 6.468 7 C 0.079 3.921 8 N -0.727 5.727 9 C 0.567 3.433 10 O -0.534 6.534 11 C -0.155 4.155 12 C -0.088 4.088 13 C -0.141 4.141 14 C -0.054 4.054 15 C -0.108 4.108 16 S -0.034 6.034 17 C -0.520 4.520 18 H 0.075 0.925 19 C 0.074 3.926 20 N -0.870 5.870 21 Si 0.920 3.080 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.273 1.273 25 C -0.017 4.017 26 C 0.097 3.903 27 N -0.298 5.298 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.189 0.811 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.408 0.592 35 H 0.119 0.881 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.270 0.730 39 H 0.140 0.860 40 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.862 0.209 3.575 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.139 5.139 3 C -0.019 4.019 4 C -0.338 4.338 5 C 0.309 3.691 6 O -0.344 6.344 7 C -0.046 4.046 8 N -0.384 5.384 9 C 0.356 3.644 10 O -0.411 6.411 11 C -0.160 4.160 12 C -0.107 4.107 13 C -0.161 4.161 14 C -0.075 4.075 15 C -0.219 4.219 16 S 0.200 5.800 17 C -0.668 4.668 18 H 0.093 0.907 19 C -0.135 4.135 20 N -0.505 5.505 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.198 1.198 25 C -0.039 4.039 26 C -0.091 4.091 27 N -0.117 5.117 28 H 0.101 0.899 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.206 0.794 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.247 0.753 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.080 0.920 39 H 0.158 0.842 40 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -30.684 -1.218 4.479 31.033 hybrid contribution -0.471 1.027 -2.165 2.442 sum -31.154 -0.191 2.313 31.241 Atomic orbital electron populations 1.22063 0.73221 1.05244 1.04191 1.48511 1.07526 1.03964 1.53928 1.23249 0.90392 0.93893 0.94349 1.20719 0.93899 0.94443 1.24703 1.21434 0.89052 0.88052 0.70593 1.90531 1.88973 1.16309 1.38615 1.21475 0.85855 0.92031 1.05198 1.45675 1.05086 1.10515 1.77075 1.18388 0.81803 0.88807 0.75412 1.90774 1.81579 1.19405 1.49382 1.19794 0.93754 0.92749 1.09661 1.21195 0.99012 0.91961 0.98552 1.21065 0.93066 0.98951 1.03016 1.21964 0.95641 0.96205 0.93717 1.22846 1.02904 0.94547 1.01616 1.83588 0.94553 1.89456 1.12366 1.22806 1.01809 1.51903 0.90271 0.90652 1.24996 0.95019 0.94330 0.99197 1.69977 1.03906 1.42208 1.34459 0.86185 0.77486 0.78853 0.82841 1.19836 1.20754 1.19789 1.21947 0.90091 1.00565 0.91319 1.24321 0.95398 0.93855 0.95534 1.77231 1.02149 1.07547 1.24820 0.89933 0.88597 0.88846 0.79361 0.87723 0.87707 0.75333 0.86307 0.85817 0.85070 0.92025 0.84244 0.78488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.18 11.44 59.85 0.68 0.87 16 2 N -0.36 -2.27 3.97 -67.51 -0.27 -2.54 16 3 C 0.13 0.85 11.30 -16.47 -0.19 0.66 16 4 C -0.32 -2.56 6.11 -105.15 -0.64 -3.20 16 5 C 0.43 3.95 7.20 -30.90 -0.22 3.73 16 6 O -0.47 -5.31 16.21 5.53 0.09 -5.22 16 7 C 0.08 0.77 5.64 -5.20 -0.03 0.74 16 8 N -0.73 -9.04 5.48 -62.43 -0.34 -9.38 16 9 C 0.57 9.26 7.77 -12.32 -0.10 9.16 16 10 O -0.53 -10.31 16.34 5.32 0.09 -10.22 16 11 C -0.15 -2.68 5.87 -105.00 -0.62 -3.29 16 12 C -0.09 -1.28 9.54 -39.12 -0.37 -1.65 16 13 C -0.14 -2.10 10.02 -39.67 -0.40 -2.50 16 14 C -0.05 -0.99 9.79 -39.25 -0.38 -1.37 16 15 C -0.11 -2.35 5.45 -39.00 -0.21 -2.56 16 16 S -0.03 -0.89 21.40 -107.50 -2.30 -3.19 16 17 C -0.52 -14.81 9.46 30.92 0.29 -14.52 16 18 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 19 C 0.07 2.08 5.49 -17.46 -0.10 1.98 16 20 N -0.87 -25.57 13.22 55.49 0.73 -24.84 16 21 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 25 C -0.02 -0.36 9.34 -38.92 -0.36 -0.72 16 26 C 0.10 0.72 11.55 -16.91 -0.20 0.53 16 27 N -0.30 -2.55 12.49 30.91 0.39 -2.16 16 28 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 29 H 0.10 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.09 -0.04 8.14 -51.93 -0.42 -0.46 16 31 H 0.19 0.72 8.06 -52.49 -0.42 0.30 16 32 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.41 4.62 5.47 -40.82 -0.22 4.40 16 35 H 0.12 1.33 6.40 -52.49 -0.34 0.99 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.13 2.27 8.06 -52.48 -0.42 1.85 16 38 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.14 3.08 7.65 -52.49 -0.40 2.68 16 40 H 0.20 0.95 8.04 -52.49 -0.42 0.53 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -36.70 374.50 -8.14 -44.84 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.31 Total: 2.63 kcal Atomic # 6 Polarization: -9.32 SS G_CDS: -2.84 Total: -12.15 kcal Atomic # 7 Polarization: -39.43 SS G_CDS: 0.51 Total: -38.92 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.18 Total: -15.45 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -0.89 SS G_CDS: -2.30 Total: -3.19 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.70 -8.14 -44.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365053588.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.249 kcal (2) G-P(sol) polarization free energy of solvation -36.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds