Wall clock time and date at job start Wed Apr 1 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47226 * 2 1 4 4 N 1.46502 * 109.46724 * 240.00036 * 2 1 3 5 5 C 1.34774 * 120.00012 * 85.00604 * 4 2 1 6 6 O 1.21700 * 120.00271 * 359.97438 * 5 4 2 7 7 C 1.46583 * 119.99935 * 179.97438 * 5 4 2 8 8 C 1.36651 * 125.46079 * 179.97438 * 7 5 4 9 9 C 1.37471 * 113.29588 * 179.97438 * 8 7 5 10 10 C 1.33818 * 115.10307 * 0.02562 * 9 8 7 11 11 S 1.70609 * 110.95441 * 359.71961 * 10 9 8 12 12 C 1.50692 * 109.47359 * 119.99885 * 2 1 3 13 13 O 1.21275 * 120.00333 * 119.99534 * 12 2 1 14 14 N 1.34781 * 120.00139 * 299.99819 * 12 2 1 15 15 C 1.39265 * 120.00209 * 185.57960 * 14 12 2 16 16 C 1.39674 * 119.57566 * 18.84554 * 15 14 12 17 17 C 1.38652 * 119.49665 * 179.97438 * 16 15 14 18 18 C 1.38355 * 118.67052 * 0.02562 * 17 16 15 19 19 C 1.40581 * 119.12699 * 359.97438 * 18 17 16 20 20 C 1.41333 * 119.78587 * 179.97438 * 19 18 17 21 21 H 1.08002 * 120.00235 * 8.93424 * 20 19 18 22 22 C 1.40023 * 120.00094 * 188.93626 * 20 19 18 23 23 N 1.30744 * 120.00111 * 196.07864 * 22 20 19 24 24 Si 1.86798 * 120.00063 * 16.06966 * 22 20 19 25 25 H 1.48496 * 109.47681 * 270.00212 * 24 22 20 26 26 H 1.48505 * 109.46940 * 30.00841 * 24 22 20 27 27 H 1.48506 * 109.47034 * 150.00315 * 24 22 20 28 28 N 1.31910 * 119.57585 * 199.08593 * 15 14 12 29 29 H 1.08999 * 109.47413 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47125 * 300.00274 * 1 2 3 31 31 H 1.08999 * 109.46946 * 60.00062 * 1 2 3 32 32 H 0.97006 * 119.99816 * 264.99277 * 4 2 1 33 33 H 1.07998 * 123.34631 * 359.97438 * 8 7 5 34 34 H 1.08004 * 122.44426 * 180.02562 * 9 8 7 35 35 H 1.07998 * 124.52179 * 180.02562 * 10 9 8 36 36 H 0.97004 * 119.99512 * 5.58178 * 14 12 2 37 37 H 1.08003 * 120.24820 * 359.96417 * 16 15 14 38 38 H 1.07995 * 120.66856 * 179.97438 * 17 16 15 39 39 H 1.07989 * 120.43490 * 180.02562 * 18 17 16 40 40 H 0.96996 * 119.99903 * 354.92519 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3571 6 8 1.8573 1.1625 -2.4119 7 6 2.6361 -0.7091 -3.5539 8 6 2.8085 -0.1389 -4.7837 9 6 3.2814 -1.0178 -5.7290 10 6 3.4891 -2.2651 -5.2911 11 16 3.1018 -2.4027 -3.6352 12 6 2.0324 -0.7103 1.2304 13 8 2.7295 -1.6964 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.2639 -0.8344 3.5893 16 6 3.4246 -1.6021 3.4701 17 6 3.9780 -2.1829 4.6010 18 6 3.3578 -1.9823 5.8213 19 6 2.1916 -1.1992 5.8757 20 6 1.5464 -0.9857 7.1150 21 1 2.0224 -1.2987 8.0326 22 6 0.2901 -0.3686 7.1531 23 7 -0.1679 0.1127 8.2791 24 14 -0.7314 -0.2328 5.5951 25 1 -0.4047 1.0369 4.8979 26 1 -0.4276 -1.3801 4.7024 27 1 -2.1743 -0.2476 5.9463 28 7 1.6858 -0.6598 4.7620 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 2.5946 0.8990 -4.9920 34 1 3.4713 -0.7231 -6.7506 35 1 3.8577 -3.0752 -5.9028 36 1 1.0845 0.4887 2.5452 37 1 3.8873 -1.7424 2.5044 38 1 4.8748 -2.7805 4.5305 39 1 3.7647 -2.4210 6.7203 40 1 0.3281 -0.0222 9.1016 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412504604.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:48:11 Heat of formation + Delta-G solvation = -6.451749 kcal Electronic energy + Delta-G solvation = -26508.150868 eV Core-core repulsion = 22607.422480 eV Total energy + Delta-G solvation = -3900.728388 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.77740 -39.73079 -38.32360 -37.72742 -35.24178 -34.75548 -33.60058 -31.69436 -31.13374 -29.88915 -29.15888 -25.75341 -25.44031 -24.56967 -22.52011 -21.83588 -21.12565 -20.20945 -19.59809 -19.11794 -18.32850 -17.63247 -16.66640 -16.36188 -15.99780 -15.60897 -15.28357 -15.11878 -14.98809 -14.50398 -14.10712 -13.97522 -13.68651 -13.38847 -13.14929 -13.07937 -12.93899 -12.71578 -12.50056 -12.45611 -12.27435 -11.91812 -11.85270 -11.31891 -11.20227 -10.92402 -10.42207 -10.37996 -10.06814 -9.82221 -9.61169 -9.32084 -9.20084 -9.13533 -8.96512 -8.57800 -7.97842 -7.50441 -7.32573 -4.81088 0.14746 1.10807 1.52118 2.02264 2.05888 2.54388 2.61128 2.87897 2.93961 3.26071 3.43374 3.56284 3.85648 4.28492 4.38044 4.52866 4.55423 4.63622 4.81282 4.91072 4.94688 5.10017 5.36167 5.47817 5.52548 5.59036 5.78990 5.79888 5.91133 5.93894 5.98727 6.01924 6.38641 6.46145 6.48528 7.04148 7.10746 7.14497 7.38643 7.46858 7.53280 7.69971 7.83498 8.03815 8.15829 8.32150 8.59760 9.36785 9.92826 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002500 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.566382 B =11196.414225 C =12093.606384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 H 0.122 0.878 4 N -0.708 5.708 5 C 0.597 3.403 6 O -0.529 6.529 7 C -0.268 4.268 8 C -0.054 4.054 9 C -0.152 4.152 10 C -0.231 4.231 11 S 0.214 5.786 12 C 0.514 3.486 13 O -0.510 6.510 14 N -0.646 5.646 15 C 0.381 3.619 16 C -0.310 4.310 17 C -0.037 4.037 18 C -0.275 4.275 19 C 0.273 3.727 20 C -0.479 4.479 21 H 0.084 0.916 22 C 0.048 3.952 23 N -0.801 5.801 24 Si 1.142 2.858 25 H -0.287 1.287 26 H -0.280 1.280 27 H -0.326 1.326 28 N -0.593 5.593 29 H 0.068 0.932 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.408 0.592 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.169 0.831 36 H 0.410 0.590 37 H 0.138 0.862 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.332 -2.634 -24.023 24.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.140 0.860 4 N -0.361 5.361 5 C 0.383 3.617 6 O -0.407 6.407 7 C -0.389 4.389 8 C -0.088 4.088 9 C -0.183 4.183 10 C -0.369 4.369 11 S 0.481 5.519 12 C 0.299 3.701 13 O -0.385 6.385 14 N -0.291 5.291 15 C 0.150 3.850 16 C -0.335 4.335 17 C -0.061 4.061 18 C -0.297 4.297 19 C 0.150 3.850 20 C -0.511 4.511 21 H 0.102 0.898 22 C -0.174 4.174 23 N -0.423 5.423 24 Si 0.975 3.025 25 H -0.214 1.214 26 H -0.207 1.207 27 H -0.258 1.258 28 N -0.318 5.318 29 H 0.087 0.913 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.246 0.754 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.187 0.813 36 H 0.246 0.754 37 H 0.155 0.845 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 1.592 -2.592 -23.484 23.680 hybrid contribution 2.183 -0.104 -0.200 2.194 sum 3.775 -2.696 -23.684 24.134 Atomic orbital electron populations 1.22200 0.92203 1.03732 1.04153 1.20781 0.96139 0.98151 0.82851 0.85991 1.45597 1.67486 1.14671 1.08392 1.16874 0.77210 0.86016 0.81606 1.90839 1.50414 1.14807 1.84614 1.24577 1.16406 0.98996 0.98885 1.20813 0.96300 1.01470 0.90207 1.20058 1.04155 0.92468 1.01628 1.25400 1.08293 1.02365 1.00869 1.83316 1.58211 1.05842 1.04511 1.20428 0.80786 0.84642 0.84262 1.90632 1.36808 1.25082 1.85959 1.43154 1.45839 1.35823 1.04301 1.18049 0.89514 0.92351 0.85076 1.21481 1.00457 1.11222 1.00329 1.20915 0.96972 0.95706 0.92486 1.21631 1.02011 1.08961 0.97138 1.18175 0.89825 0.87385 0.89658 1.20671 1.03336 1.34515 0.92593 0.89775 1.27673 0.96643 0.88638 1.04444 1.70612 1.41538 1.29226 1.00904 0.82156 0.70252 0.78526 0.71568 1.21380 1.20706 1.25807 1.66172 1.34660 1.32665 0.98281 0.91302 0.90306 0.90352 0.75422 0.82791 0.83651 0.81304 0.75419 0.84508 0.87612 0.87650 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 9.38 37.16 0.35 -1.37 16 2 C 0.13 1.58 2.99 -69.08 -0.21 1.38 16 3 H 0.12 1.45 7.58 -51.93 -0.39 1.06 16 4 N -0.71 -8.42 4.95 -56.28 -0.28 -8.70 16 5 C 0.60 7.42 7.75 -12.90 -0.10 7.32 16 6 O -0.53 -7.90 16.50 5.19 0.09 -7.81 16 7 C -0.27 -2.77 6.45 -36.79 -0.24 -3.00 16 8 C -0.05 -0.49 10.01 -40.43 -0.40 -0.89 16 9 C -0.15 -1.07 10.15 -41.41 -0.42 -1.49 16 10 C -0.23 -1.53 10.92 29.18 0.32 -1.21 16 11 S 0.21 1.71 22.16 -107.50 -2.38 -0.68 16 12 C 0.51 8.03 7.06 -10.99 -0.08 7.95 16 13 O -0.51 -9.14 12.64 5.56 0.07 -9.07 16 14 N -0.65 -11.35 5.34 -11.40 -0.06 -11.41 16 15 C 0.38 8.45 7.51 -154.98 -1.16 7.28 16 16 C -0.31 -6.77 8.83 -38.89 -0.34 -7.12 16 17 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 18 C -0.27 -6.45 9.83 -38.66 -0.38 -6.83 16 19 C 0.27 7.05 6.27 -85.00 -0.53 6.52 16 20 C -0.48 -12.80 9.51 -37.74 -0.36 -13.16 16 21 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 22 C 0.05 1.28 5.51 -17.35 -0.10 1.18 16 23 N -0.80 -21.35 13.65 55.55 0.76 -20.59 16 24 Si 1.14 26.86 25.93 -169.99 -4.41 22.45 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.69 6.55 56.52 0.37 -6.32 16 27 H -0.33 -7.55 7.11 56.52 0.40 -7.15 16 28 N -0.59 -14.62 5.06 -10.26 -0.05 -14.67 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.75 7.45 -51.93 -0.39 0.36 16 31 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.41 4.65 6.90 -40.82 -0.28 4.37 16 33 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 36 H 0.41 6.26 8.09 -40.82 -0.33 5.93 16 37 H 0.14 2.89 5.33 -52.50 -0.28 2.61 16 38 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.11 2.30 8.06 -52.49 -0.42 1.88 16 40 H 0.28 7.27 8.73 -40.82 -0.36 6.91 16 LS Contribution 358.02 15.07 5.40 5.40 Total: -1.00 -31.52 358.02 -9.16 -40.68 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.24 Total: 9.02 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -4.05 Total: -4.61 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: 0.37 Total: -55.37 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.16 Total: -16.88 kcal Atomic # 14 Polarization: 26.86 SS G_CDS: -4.41 Total: 22.45 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.38 Total: -0.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.52 -9.16 -40.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412504604.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.227 kcal (2) G-P(sol) polarization free energy of solvation -31.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds