Wall clock time and date at job start Wed Apr 1 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00406 * 2 1 4 4 C 1.34784 * 119.99870 * 179.97438 * 2 1 3 5 5 O 1.21585 * 119.99877 * 4.91747 * 4 2 1 6 6 C 1.47578 * 120.00138 * 184.91786 * 4 2 1 7 7 C 1.40305 * 120.48158 * 201.86260 * 6 4 2 8 8 C 1.36919 * 118.48408 * 179.97438 * 7 6 4 9 9 C 1.39325 * 119.38211 * 359.97438 * 8 7 6 10 10 N 1.38767 * 119.53168 * 180.02562 * 9 8 7 11 11 C 1.34775 * 120.00007 * 174.58406 * 10 9 8 12 12 O 1.21763 * 120.00202 * 5.24570 * 11 10 9 13 13 C 1.46147 * 120.00328 * 185.25374 * 11 10 9 14 14 S 1.75667 * 125.22895 * 0.02562 * 13 11 10 15 15 C 1.75475 * 92.09647 * 179.97438 * 14 13 11 16 16 C 1.32763 * 111.36964 * 0.02562 * 15 14 13 17 17 C 1.39602 * 125.23165 * 179.71563 * 13 11 10 18 18 C 1.40498 * 123.72151 * 359.96321 * 17 13 11 19 19 H 1.07998 * 120.00084 * 327.15985 * 18 17 13 20 20 C 1.40334 * 119.99953 * 147.15723 * 18 17 13 21 21 N 1.30623 * 119.99689 * 170.06847 * 20 18 17 22 22 Si 1.86790 * 119.99945 * 350.07447 * 20 18 17 23 23 H 1.48497 * 109.47531 * 86.76472 * 22 20 18 24 24 H 1.48511 * 109.47059 * 206.76346 * 22 20 18 25 25 H 1.48496 * 109.47434 * 326.76111 * 22 20 18 26 26 N 1.32556 * 120.93053 * 359.97438 * 9 8 7 27 27 C 1.31671 * 121.64773 * 359.76736 * 26 9 8 28 28 H 1.09003 * 109.47009 * 89.99964 * 1 2 3 29 29 H 1.08997 * 109.47037 * 330.00303 * 1 2 3 30 30 H 1.08998 * 109.47620 * 209.99906 * 1 2 3 31 31 H 1.08997 * 109.46971 * 84.54515 * 3 2 1 32 32 H 1.09004 * 109.47359 * 204.54881 * 3 2 1 33 33 H 1.09000 * 109.46609 * 324.54967 * 3 2 1 34 34 H 1.08000 * 120.75531 * 359.97438 * 7 6 4 35 35 H 1.08004 * 120.30570 * 179.97438 * 8 7 6 36 36 H 0.97001 * 120.00479 * 354.58488 * 10 9 8 37 37 H 1.07991 * 124.31316 * 179.97438 * 15 14 13 38 38 H 1.08003 * 122.78145 * 179.97438 * 16 15 14 39 39 H 0.97006 * 120.00217 * 179.97438 * 21 20 18 40 40 H 1.08007 * 119.74227 * 180.26355 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5342 -2.2183 -0.0893 6 6 3.6105 -1.1697 0.1101 7 6 4.3555 -2.2729 -0.3333 8 6 5.7187 -2.2313 -0.2126 9 6 6.3218 -1.1044 0.3417 10 7 7.7033 -1.0588 0.4650 11 6 8.3044 0.0673 0.8975 12 8 7.6323 1.0115 1.2707 13 6 9.7631 0.1552 0.9185 14 16 10.8624 -1.1182 0.4126 15 6 12.2702 -0.1376 0.7808 16 6 11.9205 1.0546 1.2487 17 6 10.4970 1.2662 1.3380 18 6 9.9130 2.4580 1.7990 19 1 8.9700 2.7904 1.3909 20 6 10.5550 3.2164 2.7900 21 7 10.1196 4.4130 3.0811 22 14 12.0322 2.5147 3.6926 23 1 13.2676 2.8068 2.9223 24 1 12.1300 3.1344 5.0387 25 1 11.8733 1.0451 3.8347 26 7 5.5948 -0.0747 0.7520 27 6 4.2821 -0.0715 0.6497 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8899 0.5138 31 1 2.2946 1.6321 1.0230 32 1 3.1887 1.1159 -0.4270 33 1 1.6542 2.0018 -0.5961 34 1 3.8647 -3.1351 -0.7600 35 1 6.3208 -3.0645 -0.5440 36 1 8.2363 -1.8373 0.2399 37 1 13.2910 -0.4628 0.6450 38 1 12.6423 1.8054 1.5346 39 1 10.5631 4.9372 3.7663 40 1 3.7202 0.7858 0.9901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417443654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:10 Heat of formation + Delta-G solvation = 36.345815 kcal Electronic energy + Delta-G solvation = -26634.852549 eV Core-core repulsion = 22735.980002 eV Total energy + Delta-G solvation = -3898.872547 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.87426 -39.51593 -38.02402 -36.37036 -35.82458 -34.15221 -33.43778 -32.35815 -30.84661 -29.35839 -28.08684 -27.03756 -26.24294 -23.77069 -23.45466 -22.03521 -20.64715 -19.93983 -19.14124 -18.45115 -17.30965 -17.23027 -16.59040 -16.07603 -15.93670 -15.47254 -15.20359 -14.70895 -14.58835 -14.40278 -14.14176 -13.77020 -13.43003 -13.36047 -13.08750 -13.06253 -12.83285 -12.70657 -12.45993 -12.33903 -12.18370 -11.70152 -11.65454 -11.51707 -10.97328 -10.55844 -10.34284 -10.17237 -10.08698 -9.83202 -9.77866 -9.52611 -9.36626 -8.88611 -8.36761 -7.99954 -7.78078 -7.48876 -7.23182 -4.70568 0.84616 1.43279 1.72661 2.66777 2.80923 2.81150 2.88047 2.98548 3.01489 3.25537 3.37961 3.42158 3.69950 3.90739 4.35599 4.44391 4.57014 4.85919 4.94889 4.99049 5.01639 5.09025 5.15722 5.19123 5.38566 5.51839 5.58810 5.63333 5.68398 5.83593 6.06251 6.07421 6.28581 6.38895 6.43492 6.68218 6.74896 6.92410 7.10539 7.16300 7.44162 7.78305 8.06100 8.12397 8.24986 8.39241 8.57484 9.29294 9.73317 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.002841 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.524125 B = 9851.600785 C =11302.114549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.621 5.621 3 C 0.058 3.942 4 C 0.573 3.427 5 O -0.546 6.546 6 C -0.256 4.256 7 C 0.014 3.986 8 C -0.234 4.234 9 C 0.410 3.590 10 N -0.662 5.662 11 C 0.578 3.422 12 O -0.478 6.478 13 C -0.421 4.421 14 S -0.024 6.024 15 C -0.172 4.172 16 C -0.166 4.166 17 C 0.110 3.890 18 C -0.354 4.354 19 H 0.119 0.881 20 C 0.076 3.924 21 N -0.769 5.769 22 Si 0.911 3.089 23 H -0.262 1.262 24 H -0.281 1.281 25 H -0.242 1.242 26 N -0.476 5.476 27 C 0.154 3.846 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.141 0.859 35 H 0.138 0.862 36 H 0.409 0.591 37 H 0.146 0.854 38 H 0.131 0.869 39 H 0.294 0.706 40 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.365 -6.347 -4.478 10.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.354 5.354 3 C -0.085 4.085 4 C 0.363 3.637 5 O -0.424 6.424 6 C -0.263 4.263 7 C -0.012 4.012 8 C -0.258 4.258 9 C 0.176 3.824 10 N -0.305 5.305 11 C 0.375 3.625 12 O -0.352 6.352 13 C -0.540 4.540 14 S 0.233 5.767 15 C -0.306 4.306 16 C -0.199 4.199 17 C 0.099 3.901 18 C -0.384 4.384 19 H 0.137 0.863 20 C -0.148 4.148 21 N -0.391 5.391 22 Si 0.736 3.264 23 H -0.188 1.188 24 H -0.207 1.207 25 H -0.165 1.165 26 N -0.191 5.191 27 C -0.007 4.007 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.245 0.755 37 H 0.164 0.836 38 H 0.149 0.851 39 H 0.105 0.895 40 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.801 -6.604 -4.309 11.092 hybrid contribution 0.887 0.188 0.440 1.008 sum -6.914 -6.417 -3.869 10.195 Atomic orbital electron populations 1.21619 0.78872 1.03097 1.01848 1.47581 1.07115 1.06327 1.74393 1.22548 0.98548 0.85171 1.02188 1.18102 0.86918 0.83088 0.75567 1.90741 1.70002 1.31087 1.50618 1.20586 0.93564 0.99015 1.13180 1.21001 0.92478 0.96142 0.91581 1.21183 0.95659 1.00025 1.08970 1.18907 0.85670 0.89468 0.88354 1.43977 1.03145 1.17698 1.65709 1.17026 0.86465 0.81152 0.77894 1.90856 1.64187 1.35608 1.44579 1.22441 0.92557 0.98851 1.40139 1.82813 0.98343 1.21680 1.73866 1.24931 1.00815 0.97992 1.06879 1.21614 0.96784 0.97391 1.04089 1.17890 0.88813 0.91814 0.91619 1.19732 1.06745 0.98750 1.13129 0.86290 1.26490 0.98087 0.93424 0.96828 1.69540 1.36874 1.08122 1.24586 0.86405 0.79945 0.82017 0.78053 1.18837 1.20748 1.16517 1.68105 1.06138 1.25955 1.18914 1.24069 0.89907 0.96029 0.90710 0.92753 0.91104 0.90567 0.91323 0.88902 0.90853 0.84081 0.84368 0.75518 0.83600 0.85138 0.89527 0.80490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.43 59.84 0.62 1.39 16 2 N -0.62 -6.92 3.27 -190.75 -0.62 -7.54 16 3 C 0.06 0.51 8.68 59.85 0.52 1.03 16 4 C 0.57 8.13 7.52 -12.45 -0.09 8.04 16 5 O -0.55 -9.17 16.24 5.29 0.09 -9.08 16 6 C -0.26 -3.68 5.59 -104.81 -0.59 -4.26 16 7 C 0.01 0.19 9.66 -39.28 -0.38 -0.19 16 8 C -0.23 -3.25 9.86 -39.66 -0.39 -3.64 16 9 C 0.41 7.26 7.41 -155.04 -1.15 6.11 16 10 N -0.66 -12.37 5.35 -12.79 -0.07 -12.44 16 11 C 0.58 13.45 7.71 -13.09 -0.10 13.35 16 12 O -0.48 -12.70 12.85 5.13 0.07 -12.64 16 13 C -0.42 -9.73 6.50 -35.90 -0.23 -9.96 16 14 S -0.02 -0.44 22.26 -107.50 -2.39 -2.83 16 15 C -0.17 -3.18 11.07 28.86 0.32 -2.86 16 16 C -0.17 -3.50 7.54 -39.12 -0.30 -3.80 16 17 C 0.11 2.67 5.15 -106.20 -0.55 2.12 16 18 C -0.35 -9.33 8.82 -37.94 -0.33 -9.66 16 19 H 0.12 3.52 6.66 -52.49 -0.35 3.17 16 20 C 0.08 1.86 5.51 -17.28 -0.10 1.77 16 21 N -0.77 -19.14 13.92 55.57 0.77 -18.37 16 22 Si 0.91 18.67 24.59 -169.99 -4.18 14.49 16 23 H -0.26 -4.97 6.45 56.52 0.36 -4.60 16 24 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 25 H -0.24 -5.13 6.88 56.52 0.39 -4.74 16 26 N -0.48 -9.13 7.84 -12.09 -0.09 -9.22 16 27 C 0.15 2.35 8.75 -17.12 -0.15 2.20 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 30 H 0.08 0.75 7.49 -51.93 -0.39 0.36 16 31 H 0.07 0.54 7.21 -51.93 -0.37 0.17 16 32 H 0.09 0.95 4.95 -51.93 -0.26 0.70 16 33 H 0.07 0.49 8.11 -51.93 -0.42 0.07 16 34 H 0.14 1.68 7.87 -52.49 -0.41 1.27 16 35 H 0.14 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.41 6.40 7.78 -40.82 -0.32 6.09 16 37 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.13 2.61 4.81 -52.48 -0.25 2.35 16 39 H 0.29 6.47 8.29 -40.82 -0.34 6.14 16 40 H 0.18 2.26 4.13 -52.48 -0.22 2.04 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -32.13 346.58 -7.97 -40.09 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -3.86 Total: 10.67 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.89 Total: 1.64 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.01 Total: -47.57 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.15 Total: -21.72 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -4.18 Total: 14.49 kcal Atomic # 16 Polarization: -0.44 SS G_CDS: -2.39 Total: -2.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.13 -7.97 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417443654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.441 kcal (2) G-P(sol) polarization free energy of solvation -32.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds