Wall clock time and date at job start Wed Apr 1 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00406 * 2 1 4 4 C 1.34784 * 119.99870 * 179.97438 * 2 1 3 5 5 O 1.21585 * 119.99877 * 4.91747 * 4 2 1 6 6 C 1.47578 * 120.00138 * 184.91786 * 4 2 1 7 7 C 1.40305 * 120.48158 * 201.86260 * 6 4 2 8 8 C 1.36919 * 118.48408 * 179.97438 * 7 6 4 9 9 C 1.39325 * 119.38211 * 359.97438 * 8 7 6 10 10 N 1.38767 * 119.53168 * 180.02562 * 9 8 7 11 11 C 1.34775 * 120.00007 * 174.58406 * 10 9 8 12 12 O 1.21763 * 120.00202 * 5.24570 * 11 10 9 13 13 C 1.46147 * 120.00328 * 185.25374 * 11 10 9 14 14 S 1.75667 * 125.22895 * 0.02562 * 13 11 10 15 15 C 1.75475 * 92.09647 * 179.97438 * 14 13 11 16 16 C 1.32763 * 111.36964 * 0.02562 * 15 14 13 17 17 C 1.39602 * 125.23165 * 179.71563 * 13 11 10 18 18 C 1.40498 * 123.72151 * 359.96321 * 17 13 11 19 19 H 1.07998 * 120.00084 * 327.15985 * 18 17 13 20 20 C 1.40334 * 119.99953 * 147.15723 * 18 17 13 21 21 N 1.30623 * 119.99689 * 170.06847 * 20 18 17 22 22 Si 1.86790 * 119.99945 * 350.07447 * 20 18 17 23 23 H 1.48497 * 109.47531 * 86.76472 * 22 20 18 24 24 H 1.48511 * 109.47059 * 206.76346 * 22 20 18 25 25 H 1.48496 * 109.47434 * 326.76111 * 22 20 18 26 26 N 1.32556 * 120.93053 * 359.97438 * 9 8 7 27 27 C 1.31671 * 121.64773 * 359.76736 * 26 9 8 28 28 H 1.09003 * 109.47009 * 89.99964 * 1 2 3 29 29 H 1.08997 * 109.47037 * 330.00303 * 1 2 3 30 30 H 1.08998 * 109.47620 * 209.99906 * 1 2 3 31 31 H 1.08997 * 109.46971 * 84.54515 * 3 2 1 32 32 H 1.09004 * 109.47359 * 204.54881 * 3 2 1 33 33 H 1.09000 * 109.46609 * 324.54967 * 3 2 1 34 34 H 1.08000 * 120.75531 * 359.97438 * 7 6 4 35 35 H 1.08004 * 120.30570 * 179.97438 * 8 7 6 36 36 H 0.97001 * 120.00479 * 354.58488 * 10 9 8 37 37 H 1.07991 * 124.31316 * 179.97438 * 15 14 13 38 38 H 1.08003 * 122.78145 * 179.97438 * 16 15 14 39 39 H 0.97006 * 120.00217 * 179.97438 * 21 20 18 40 40 H 1.08007 * 119.74227 * 180.26355 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.1388 -1.1673 0.0005 5 8 1.5342 -2.2183 -0.0893 6 6 3.6105 -1.1697 0.1101 7 6 4.3555 -2.2729 -0.3333 8 6 5.7187 -2.2313 -0.2126 9 6 6.3218 -1.1044 0.3417 10 7 7.7033 -1.0588 0.4650 11 6 8.3044 0.0673 0.8975 12 8 7.6323 1.0115 1.2707 13 6 9.7631 0.1552 0.9185 14 16 10.8624 -1.1182 0.4126 15 6 12.2702 -0.1376 0.7808 16 6 11.9205 1.0546 1.2487 17 6 10.4970 1.2662 1.3380 18 6 9.9130 2.4580 1.7990 19 1 8.9700 2.7904 1.3909 20 6 10.5550 3.2164 2.7900 21 7 10.1196 4.4130 3.0811 22 14 12.0322 2.5147 3.6926 23 1 13.2676 2.8068 2.9223 24 1 12.1300 3.1344 5.0387 25 1 11.8733 1.0451 3.8347 26 7 5.5948 -0.0747 0.7520 27 6 4.2821 -0.0715 0.6497 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8899 0.5138 31 1 2.2946 1.6321 1.0230 32 1 3.1887 1.1159 -0.4270 33 1 1.6542 2.0018 -0.5961 34 1 3.8647 -3.1351 -0.7600 35 1 6.3208 -3.0645 -0.5440 36 1 8.2363 -1.8373 0.2399 37 1 13.2910 -0.4628 0.6450 38 1 12.6423 1.8054 1.5346 39 1 10.5631 4.9372 3.7663 40 1 3.7202 0.7858 0.9901 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417443654.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:09 Heat of formation + Delta-G solvation = 13.869684 kcal Electronic energy + Delta-G solvation = -26635.827187 eV Core-core repulsion = 22735.980002 eV Total energy + Delta-G solvation = -3899.847185 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.10665 -40.82777 -39.54411 -38.01772 -36.85078 -35.73135 -35.19509 -33.59181 -32.10360 -30.99092 -29.13529 -28.46622 -27.37915 -25.12407 -24.67514 -23.60039 -22.16819 -21.01690 -20.84969 -19.98955 -18.68328 -18.41460 -17.89637 -17.53845 -17.13521 -16.99480 -16.43811 -16.18352 -15.85533 -15.75147 -15.35902 -15.27154 -14.99742 -14.74077 -14.33980 -14.22939 -14.06753 -13.87519 -13.83530 -13.50464 -13.32446 -13.15522 -13.06857 -12.69371 -12.57382 -12.29008 -11.87970 -11.72543 -11.45852 -11.24639 -11.18554 -11.00664 -10.87589 -9.95802 -9.79693 -9.55085 -9.26931 -9.10196 -8.99515 -6.55507 -0.42005 0.09712 0.27245 1.13656 1.19852 1.34271 1.42444 1.53129 1.62374 1.75329 1.93049 2.01777 2.07148 2.40498 2.86521 3.13423 3.31828 3.46498 3.77838 3.86190 3.99490 4.14384 4.22871 4.40141 4.41973 4.44899 4.58939 4.68738 4.69083 4.80808 4.82557 4.90031 4.98287 5.01990 5.15960 5.19404 5.29221 5.41527 5.68718 5.76737 6.16784 6.17570 6.29229 6.46277 6.64733 6.97720 7.07445 7.58837 8.04093 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016462 B = 0.002841 C = 0.002477 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.524125 B = 9851.600785 C =11302.114549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.615 5.615 3 C 0.054 3.946 4 C 0.568 3.432 5 O -0.576 6.576 6 C -0.247 4.247 7 C 0.012 3.988 8 C -0.210 4.210 9 C 0.377 3.623 10 N -0.655 5.655 11 C 0.573 3.427 12 O -0.524 6.524 13 C -0.450 4.450 14 S 0.054 5.946 15 C -0.149 4.149 16 C -0.200 4.200 17 C 0.101 3.899 18 C -0.405 4.405 19 H 0.062 0.938 20 C 0.039 3.961 21 N -0.819 5.819 22 Si 0.971 3.029 23 H -0.230 1.230 24 H -0.272 1.272 25 H -0.251 1.251 26 N -0.525 5.525 27 C 0.147 3.853 28 H 0.064 0.936 29 H 0.101 0.899 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.164 0.836 35 H 0.177 0.823 36 H 0.423 0.577 37 H 0.197 0.803 38 H 0.143 0.857 39 H 0.303 0.697 40 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.121 -9.137 -5.357 12.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.347 5.347 3 C -0.088 4.088 4 C 0.358 3.642 5 O -0.457 6.457 6 C -0.255 4.255 7 C -0.014 4.014 8 C -0.234 4.234 9 C 0.145 3.855 10 N -0.300 5.300 11 C 0.369 3.631 12 O -0.401 6.401 13 C -0.569 4.569 14 S 0.312 5.688 15 C -0.284 4.284 16 C -0.233 4.233 17 C 0.090 3.910 18 C -0.436 4.436 19 H 0.080 0.920 20 C -0.180 4.180 21 N -0.444 5.444 22 Si 0.791 3.209 23 H -0.154 1.154 24 H -0.198 1.198 25 H -0.174 1.174 26 N -0.240 5.240 27 C -0.013 4.013 28 H 0.083 0.917 29 H 0.119 0.881 30 H 0.082 0.918 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.120 0.880 34 H 0.182 0.818 35 H 0.194 0.806 36 H 0.262 0.738 37 H 0.214 0.786 38 H 0.160 0.840 39 H 0.114 0.886 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -6.608 -9.404 -5.228 12.627 hybrid contribution 0.221 0.832 0.523 1.007 sum -6.386 -8.572 -4.706 11.679 Atomic orbital electron populations 1.21826 0.77174 1.04008 1.02816 1.47721 1.08310 1.06101 1.72558 1.22655 0.97991 0.84755 1.03394 1.18096 0.86708 0.83630 0.75777 1.90725 1.70345 1.32232 1.52428 1.20797 0.94109 0.98821 1.11732 1.21340 0.92415 0.96530 0.91100 1.21442 0.95941 0.99325 1.06651 1.19192 0.85125 0.90813 0.90366 1.43543 1.03967 1.16828 1.65626 1.17319 0.86885 0.81680 0.77224 1.90836 1.65385 1.37583 1.46312 1.23033 0.93853 1.00949 1.39030 1.82453 0.96150 1.18449 1.71778 1.25592 1.03182 0.96589 1.03038 1.21544 0.94985 0.99397 1.07360 1.18230 0.91105 0.91165 0.90539 1.19463 1.05894 1.01671 1.16552 0.92006 1.27284 1.00694 0.93361 0.96691 1.69581 1.39027 1.09546 1.26250 0.85525 0.77575 0.80405 0.77416 1.15354 1.19842 1.17445 1.67956 1.07960 1.27747 1.20323 1.24331 0.88842 0.97087 0.91007 0.91728 0.88088 0.91791 0.90111 0.90516 0.87994 0.81813 0.80598 0.73844 0.78575 0.83971 0.88628 0.78950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.43 127.77 1.33 2.63 16 2 N -0.62 -12.88 3.27 -875.68 -2.87 -15.75 16 3 C 0.05 0.89 8.68 127.77 1.11 2.00 16 4 C 0.57 15.64 7.52 86.71 0.65 16.30 16 5 O -0.58 -18.87 16.24 -3.99 -0.06 -18.93 16 6 C -0.25 -6.97 5.59 -19.99 -0.11 -7.08 16 7 C 0.01 0.31 9.66 22.46 0.22 0.53 16 8 C -0.21 -5.44 9.86 22.22 0.22 -5.22 16 9 C 0.38 13.42 7.41 133.14 0.99 14.41 16 10 N -0.65 -24.50 5.35 -312.57 -1.67 -26.17 16 11 C 0.57 27.72 7.71 86.30 0.67 28.39 16 12 O -0.52 -30.03 12.85 -4.55 -0.06 -30.09 16 13 C -0.45 -20.97 6.50 24.65 0.16 -20.81 16 14 S 0.05 1.82 22.26 -56.49 -1.26 0.57 16 15 C -0.15 -4.90 11.07 66.64 0.74 -4.16 16 16 C -0.20 -8.10 7.54 22.61 0.17 -7.93 16 17 C 0.10 5.05 5.15 -20.89 -0.11 4.94 16 18 C -0.40 -23.06 8.82 23.33 0.21 -22.86 16 19 H 0.06 4.10 6.66 -2.91 -0.02 4.08 16 20 C 0.04 2.00 5.51 85.38 0.47 2.47 16 21 N -0.82 -43.75 13.92 21.89 0.30 -43.45 16 22 Si 0.97 38.63 24.59 68.60 1.69 40.32 16 23 H -0.23 -7.85 6.45 99.48 0.64 -7.21 16 24 H -0.27 -10.26 7.11 99.48 0.71 -9.56 16 25 H -0.25 -10.21 6.88 99.48 0.68 -9.52 16 26 N -0.52 -20.93 7.84 -192.16 -1.51 -22.44 16 27 C 0.15 4.58 8.75 85.04 0.74 5.32 16 28 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.10 0.97 8.07 -2.39 -0.02 0.95 16 30 H 0.06 1.19 7.49 -2.39 -0.02 1.17 16 31 H 0.08 1.19 7.21 -2.39 -0.02 1.17 16 32 H 0.08 1.58 4.95 -2.38 -0.01 1.56 16 33 H 0.10 1.15 8.11 -2.39 -0.02 1.13 16 34 H 0.16 3.47 7.87 -2.91 -0.02 3.45 16 35 H 0.18 3.12 8.06 -2.91 -0.02 3.10 16 36 H 0.42 12.61 7.78 -92.71 -0.72 11.89 16 37 H 0.20 4.47 8.06 -2.92 -0.02 4.45 16 38 H 0.14 5.34 4.81 -2.91 -0.01 5.33 16 39 H 0.30 14.15 8.29 -92.70 -0.77 13.38 16 40 H 0.19 5.08 4.13 -2.91 -0.01 5.07 16 Total: -1.00 -78.03 346.58 2.34 -75.70 By element: Atomic # 1 Polarization: 30.99 SS G_CDS: 0.32 Total: 31.32 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.45 Total: 8.94 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -5.74 Total: -107.81 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.12 Total: -49.02 kcal Atomic # 14 Polarization: 38.63 SS G_CDS: 1.69 Total: 40.32 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -1.26 Total: 0.57 kcal Total: -78.03 2.34 -75.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417443654.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.565 kcal (2) G-P(sol) polarization free energy of solvation -78.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds