Wall clock time and date at job start Wed Apr 1 2020 03:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76203 * 99.99723 * 2 1 4 4 C 1.39353 * 120.49873 * 179.97438 * 3 2 1 5 5 C 1.38960 * 118.26909 * 179.97438 * 4 3 2 6 6 N 1.39129 * 120.47366 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99969 * 174.89836 * 6 5 4 8 8 O 1.21263 * 120.00358 * 5.10437 * 7 6 5 9 9 C 1.50703 * 119.99951 * 185.10736 * 7 6 5 10 10 C 1.50694 * 109.47063 * 180.02562 * 9 7 6 11 11 C 1.38311 * 119.93070 * 269.72355 * 10 9 7 12 12 C 1.38093 * 120.06727 * 179.72481 * 11 10 9 13 13 C 1.38878 * 119.93545 * 0.57411 * 12 11 10 14 14 O 1.35749 * 120.07434 * 179.68109 * 13 12 11 15 15 C 1.34824 * 117.00450 * 185.54707 * 14 13 12 16 16 H 1.08007 * 120.00069 * 354.94402 * 15 14 13 17 17 C 1.38652 * 120.00226 * 174.94608 * 15 14 13 18 18 N 1.31557 * 119.99920 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47155 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47032 * 119.99830 * 19 17 15 22 22 H 1.48504 * 109.47001 * 239.99784 * 19 17 15 23 23 C 1.38885 * 119.86042 * 359.69985 * 13 12 11 24 24 C 1.38101 * 119.92798 * 0.02562 * 23 13 12 25 25 N 1.33159 * 119.05411 * 359.97438 * 5 4 3 26 26 C 1.31725 * 120.91029 * 0.02562 * 25 5 4 27 27 N 1.31748 * 121.91937 * 359.97438 * 26 25 5 28 28 H 1.08998 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47133 * 300.00318 * 1 2 3 30 30 H 1.09004 * 109.47015 * 59.99870 * 1 2 3 31 31 H 1.08006 * 120.86190 * 0.24939 * 4 3 2 32 32 H 0.97003 * 119.99778 * 354.89538 * 6 5 4 33 33 H 1.09005 * 109.46839 * 299.99714 * 9 7 6 34 34 H 1.09000 * 109.47400 * 60.00041 * 9 7 6 35 35 H 1.07997 * 119.95864 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.03414 * 180.27251 * 12 11 10 37 37 H 0.97001 * 119.99536 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.03395 * 179.97438 * 23 13 12 39 39 H 1.07998 * 119.96129 * 180.02562 * 24 23 13 40 40 H 1.08005 * 119.04194 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4212 2.2233 0.0005 5 6 3.6090 3.6002 0.0000 6 7 4.8924 4.1372 0.0010 7 6 5.0654 5.4698 -0.1034 8 8 4.1033 6.2079 -0.1049 9 6 6.4546 6.0425 -0.2182 10 6 6.3721 7.5437 -0.3203 11 6 6.2764 8.1468 -1.5614 12 6 6.1949 9.5219 -1.6580 13 6 6.2212 10.3002 -0.5081 14 8 6.1478 11.6525 -0.6002 15 6 6.2941 12.3528 0.5427 16 1 6.3794 11.8345 1.4864 17 6 6.3350 13.7382 0.5064 18 7 6.2306 14.3695 -0.6430 19 14 6.5370 14.7084 2.0900 20 1 6.6295 13.7699 3.2371 21 1 7.7756 15.5242 2.0161 22 1 5.3658 15.6023 2.2756 23 6 6.3231 9.6920 0.7364 24 6 6.3986 8.3160 0.8267 25 7 2.5430 4.3982 -0.0016 26 6 1.3240 3.8991 -0.0021 27 7 1.1031 2.6002 -0.0016 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.2648 1.5490 -0.0031 32 1 5.6627 3.5526 0.0769 33 1 7.0340 5.7701 0.6640 34 1 6.9397 5.6435 -1.1090 35 1 6.2613 7.5412 -2.4555 36 1 6.1157 9.9920 -2.6271 37 1 6.2597 15.3388 -0.6683 38 1 6.3443 10.2946 1.6324 39 1 6.4774 7.8425 1.7941 40 1 0.4810 4.5742 -0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417567722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:38 Heat of formation + Delta-G solvation = 26.468725 kcal Electronic energy + Delta-G solvation = -25562.096016 eV Core-core repulsion = 21662.795167 eV Total energy + Delta-G solvation = -3899.300849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40669 -39.75494 -38.80365 -36.61963 -35.48611 -33.37372 -32.49388 -31.86826 -30.97890 -30.14605 -29.35526 -26.95871 -25.34567 -24.92699 -24.16247 -21.97409 -21.51090 -20.28690 -19.23247 -17.97501 -17.82340 -17.12523 -16.86680 -16.08262 -15.90620 -15.87308 -15.21789 -15.02075 -14.62269 -14.45654 -14.26481 -14.14858 -13.94411 -13.85100 -13.49013 -13.45400 -12.90898 -12.72349 -12.64067 -12.08830 -11.72456 -11.48023 -11.37243 -11.27262 -11.02682 -10.87844 -10.86421 -10.78440 -10.60292 -10.41022 -10.22518 -9.31401 -9.17319 -9.15372 -8.81497 -8.23964 -8.14591 -7.16913 -6.43711 -4.02112 0.57110 0.72038 0.95655 1.67961 2.16637 2.26163 2.61810 2.65123 3.13681 3.14859 3.20595 3.55069 3.89972 3.98041 4.10505 4.51007 4.52401 4.70425 4.78546 4.79675 4.92234 4.99634 5.11060 5.18613 5.24782 5.31483 5.39501 5.58113 5.67093 5.71951 5.84335 6.22204 6.24613 6.41170 6.42685 6.70485 6.91308 7.03215 7.09201 7.24553 7.36548 7.45990 7.82982 7.85050 8.01693 8.11714 9.02071 9.72445 10.74394 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.001780 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.273819 B =15724.150010 C =16130.884186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.053 6.053 3 C 0.178 3.822 4 C -0.251 4.251 5 C 0.424 3.576 6 N -0.662 5.662 7 C 0.495 3.505 8 O -0.441 6.441 9 C -0.075 4.075 10 C -0.177 4.177 11 C -0.057 4.057 12 C -0.191 4.191 13 C 0.159 3.841 14 O -0.177 6.177 15 C -0.391 4.391 16 H 0.093 0.907 17 C 0.038 3.962 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.276 1.276 22 H -0.276 1.276 23 C -0.233 4.233 24 C -0.054 4.054 25 N -0.515 5.515 26 C 0.344 3.656 27 N -0.554 5.554 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.149 0.851 32 H 0.419 0.581 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.269 0.731 38 H 0.127 0.873 39 H 0.104 0.896 40 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.431 -29.278 1.921 29.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.185 5.815 3 C -0.077 4.077 4 C -0.284 4.284 5 C 0.184 3.816 6 N -0.310 5.310 7 C 0.281 3.719 8 O -0.305 6.305 9 C -0.115 4.115 10 C -0.178 4.178 11 C -0.076 4.076 12 C -0.211 4.211 13 C 0.105 3.895 14 O -0.080 6.080 15 C -0.467 4.467 16 H 0.110 0.890 17 C -0.166 4.166 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.201 1.201 22 H -0.201 1.201 23 C -0.252 4.252 24 C -0.072 4.072 25 N -0.237 5.237 26 C 0.052 3.948 27 N -0.276 5.276 28 H 0.121 0.879 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.167 0.833 32 H 0.256 0.744 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.126 0.874 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.145 0.855 39 H 0.122 0.878 40 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.148 -28.599 1.625 29.104 hybrid contribution 0.280 0.669 0.889 1.147 sum -4.868 -27.930 2.514 28.463 Atomic orbital electron populations 1.23476 0.93320 1.06197 1.07385 1.85774 1.08616 0.96697 1.90454 1.23186 0.91250 0.99478 0.93807 1.21680 0.98205 0.94811 1.13719 1.18571 0.86728 0.88116 0.88226 1.44003 1.05168 1.09670 1.72147 1.21578 0.93354 0.80458 0.76540 1.90869 1.41769 1.57113 1.40780 1.20418 0.92028 0.94832 1.04183 1.18567 1.13766 0.91589 0.93878 1.20394 0.97715 0.93571 0.95894 1.20151 1.11283 0.92772 0.96867 1.19397 0.91905 0.85092 0.93140 1.83974 1.77383 1.11941 1.34740 1.21386 1.51809 0.88697 0.84804 0.88988 1.25297 0.96610 0.95785 0.98878 1.70053 1.45977 1.09043 1.24634 0.85643 0.78264 0.79485 0.80003 1.19099 1.20142 1.20147 1.21107 1.11492 0.94652 0.97934 1.20505 0.97020 0.93274 0.96445 1.68568 0.98516 1.38742 1.17891 1.24971 0.93446 0.88868 0.87565 1.68745 1.33802 1.04645 1.20368 0.87942 0.88999 0.88993 0.83288 0.74377 0.88566 0.88481 0.87362 0.86499 0.92081 0.85536 0.87790 0.78160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 9.68 101.05 0.98 0.22 16 2 S -0.05 -0.39 22.74 -107.50 -2.44 -2.83 16 3 C 0.18 1.76 7.00 -16.55 -0.12 1.64 16 4 C -0.25 -2.31 9.81 -38.90 -0.38 -2.69 16 5 C 0.42 4.94 7.45 -154.31 -1.15 3.79 16 6 N -0.66 -6.44 5.38 -11.34 -0.06 -6.50 16 7 C 0.49 6.60 7.78 -10.98 -0.09 6.52 16 8 O -0.44 -8.21 14.34 5.57 0.08 -8.13 16 9 C -0.07 -0.85 5.83 -29.04 -0.17 -1.02 16 10 C -0.18 -2.98 4.38 -104.57 -0.46 -3.44 16 11 C -0.06 -1.04 9.69 -39.61 -0.38 -1.43 16 12 C -0.19 -4.17 9.99 -39.40 -0.39 -4.56 16 13 C 0.16 3.94 6.65 -39.10 -0.26 3.68 16 14 O -0.18 -5.16 9.76 0.07 0.00 -5.16 16 15 C -0.39 -11.10 9.49 30.89 0.29 -10.80 16 16 H 0.09 2.43 5.20 -52.48 -0.27 2.15 16 17 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -25.57 13.67 55.48 0.76 -24.81 16 19 Si 0.94 20.79 29.55 -169.99 -5.02 15.77 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 22 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 23 C -0.23 -5.19 9.17 -39.39 -0.36 -5.56 16 24 C -0.05 -1.01 9.69 -39.61 -0.38 -1.39 16 25 N -0.52 -7.30 8.05 -13.81 -0.11 -7.41 16 26 C 0.34 4.03 12.28 -92.25 -1.13 2.90 16 27 N -0.55 -6.00 9.30 -13.44 -0.12 -6.13 16 28 H 0.10 0.36 8.14 -51.92 -0.42 -0.07 16 29 H 0.09 0.56 8.14 -51.91 -0.42 0.14 16 30 H 0.09 0.56 8.14 -51.91 -0.42 0.14 16 31 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.42 2.13 8.72 -40.82 -0.36 1.78 16 33 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 34 H 0.10 0.84 8.08 -51.93 -0.42 0.42 16 35 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 2.46 8.06 -52.48 -0.42 2.03 16 37 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.13 2.83 5.64 -52.49 -0.30 2.53 16 39 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 40 H 0.20 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -36.63 367.22 -9.77 -46.40 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.28 Total: 4.46 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -4.10 Total: -11.18 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.46 Total: -44.86 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -2.44 Total: -2.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.63 -9.77 -46.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417567722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.869 kcal (2) G-P(sol) polarization free energy of solvation -36.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.401 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds