Wall clock time and date at job start Wed Apr 1 2020 03:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76203 * 99.99723 * 2 1 4 4 C 1.39353 * 120.49873 * 179.97438 * 3 2 1 5 5 C 1.38960 * 118.26909 * 179.97438 * 4 3 2 6 6 N 1.39129 * 120.47366 * 179.97438 * 5 4 3 7 7 C 1.34777 * 119.99969 * 174.89836 * 6 5 4 8 8 O 1.21263 * 120.00358 * 5.10437 * 7 6 5 9 9 C 1.50703 * 119.99951 * 185.10736 * 7 6 5 10 10 C 1.50694 * 109.47063 * 180.02562 * 9 7 6 11 11 C 1.38311 * 119.93070 * 269.72355 * 10 9 7 12 12 C 1.38093 * 120.06727 * 179.72481 * 11 10 9 13 13 C 1.38878 * 119.93545 * 0.57411 * 12 11 10 14 14 O 1.35749 * 120.07434 * 179.68109 * 13 12 11 15 15 C 1.34824 * 117.00450 * 185.54707 * 14 13 12 16 16 H 1.08007 * 120.00069 * 354.94402 * 15 14 13 17 17 C 1.38652 * 120.00226 * 174.94608 * 15 14 13 18 18 N 1.31557 * 119.99920 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47155 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47032 * 119.99830 * 19 17 15 22 22 H 1.48504 * 109.47001 * 239.99784 * 19 17 15 23 23 C 1.38885 * 119.86042 * 359.69985 * 13 12 11 24 24 C 1.38101 * 119.92798 * 0.02562 * 23 13 12 25 25 N 1.33159 * 119.05411 * 359.97438 * 5 4 3 26 26 C 1.31725 * 120.91029 * 0.02562 * 25 5 4 27 27 N 1.31748 * 121.91937 * 359.97438 * 26 25 5 28 28 H 1.08998 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47133 * 300.00318 * 1 2 3 30 30 H 1.09004 * 109.47015 * 59.99870 * 1 2 3 31 31 H 1.08006 * 120.86190 * 0.24939 * 4 3 2 32 32 H 0.97003 * 119.99778 * 354.89538 * 6 5 4 33 33 H 1.09005 * 109.46839 * 299.99714 * 9 7 6 34 34 H 1.09000 * 109.47400 * 60.00041 * 9 7 6 35 35 H 1.07997 * 119.95864 * 359.97438 * 11 10 9 36 36 H 1.08004 * 120.03414 * 180.27251 * 12 11 10 37 37 H 0.97001 * 119.99536 * 180.02562 * 18 17 15 38 38 H 1.08000 * 120.03395 * 179.97438 * 23 13 12 39 39 H 1.07998 * 119.96129 * 180.02562 * 24 23 13 40 40 H 1.08005 * 119.04194 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 3.4212 2.2233 0.0005 5 6 3.6090 3.6002 0.0000 6 7 4.8924 4.1372 0.0010 7 6 5.0654 5.4698 -0.1034 8 8 4.1033 6.2079 -0.1049 9 6 6.4546 6.0425 -0.2182 10 6 6.3721 7.5437 -0.3203 11 6 6.2764 8.1468 -1.5614 12 6 6.1949 9.5219 -1.6580 13 6 6.2212 10.3002 -0.5081 14 8 6.1478 11.6525 -0.6002 15 6 6.2941 12.3528 0.5427 16 1 6.3794 11.8345 1.4864 17 6 6.3350 13.7382 0.5064 18 7 6.2306 14.3695 -0.6430 19 14 6.5370 14.7084 2.0900 20 1 6.6295 13.7699 3.2371 21 1 7.7756 15.5242 2.0161 22 1 5.3658 15.6023 2.2756 23 6 6.3231 9.6920 0.7364 24 6 6.3986 8.3160 0.8267 25 7 2.5430 4.3982 -0.0016 26 6 1.3240 3.8991 -0.0021 27 7 1.1031 2.6002 -0.0016 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 4.2648 1.5490 -0.0031 32 1 5.6627 3.5526 0.0769 33 1 7.0340 5.7701 0.6640 34 1 6.9397 5.6435 -1.1090 35 1 6.2613 7.5412 -2.4555 36 1 6.1157 9.9920 -2.6271 37 1 6.2597 15.3388 -0.6683 38 1 6.3443 10.2946 1.6324 39 1 6.4774 7.8425 1.7941 40 1 0.4810 4.5742 -0.0038 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417567722.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:37 Heat of formation + Delta-G solvation = 2.612704 kcal Electronic energy + Delta-G solvation = -25563.130491 eV Core-core repulsion = 21662.795167 eV Total energy + Delta-G solvation = -3900.335324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.23789 -40.99011 -40.32216 -38.27103 -36.47050 -34.43094 -34.18070 -33.06090 -32.07426 -31.76906 -29.82092 -28.39984 -27.15431 -25.81352 -25.08304 -23.64125 -22.76130 -21.54608 -20.05362 -19.83683 -18.86810 -18.70230 -17.82059 -16.94070 -16.86419 -16.58589 -16.40371 -16.30947 -16.05525 -15.73646 -15.61802 -15.52224 -15.10906 -14.84602 -14.74770 -14.44851 -14.38473 -14.13194 -13.61849 -13.37916 -13.02993 -12.98536 -12.59422 -12.49045 -12.30259 -12.25579 -12.10113 -12.05296 -11.67602 -11.66193 -11.26845 -11.17917 -10.80330 -10.07075 -9.97862 -9.76226 -8.91264 -8.81836 -8.48041 -6.16175 -0.18948 -0.09997 0.32601 0.61824 0.65014 1.15398 1.33575 1.41852 1.52360 1.66465 1.77890 2.16995 2.73341 2.81009 3.09266 3.19492 3.36644 3.51571 3.79341 3.84572 3.98679 4.05558 4.18124 4.24946 4.33987 4.38100 4.38545 4.48518 4.59468 4.70395 4.80638 4.86560 4.98626 5.08829 5.14485 5.30276 5.44281 5.55851 5.65772 5.71855 5.76532 6.02652 6.21806 6.33926 6.96597 6.98583 7.27385 7.78105 8.75639 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.025699 B = 0.001780 C = 0.001735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.273819 B =15724.150010 C =16130.884186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.030 6.030 3 C 0.157 3.843 4 C -0.236 4.236 5 C 0.404 3.596 6 N -0.641 5.641 7 C 0.501 3.499 8 O -0.506 6.506 9 C -0.071 4.071 10 C -0.149 4.149 11 C -0.055 4.055 12 C -0.208 4.208 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.413 4.413 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.921 5.921 19 Si 1.020 2.980 20 H -0.252 1.252 21 H -0.265 1.265 22 H -0.269 1.269 23 C -0.246 4.246 24 C -0.057 4.057 25 N -0.558 5.558 26 C 0.330 3.670 27 N -0.557 5.557 28 H 0.127 0.873 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.184 0.816 32 H 0.443 0.557 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.147 0.853 36 H 0.111 0.889 37 H 0.273 0.727 38 H 0.116 0.884 39 H 0.140 0.860 40 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.365 -34.020 3.212 34.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.207 5.793 3 C -0.098 4.098 4 C -0.269 4.269 5 C 0.164 3.836 6 N -0.292 5.292 7 C 0.288 3.712 8 O -0.375 6.375 9 C -0.110 4.110 10 C -0.150 4.150 11 C -0.073 4.073 12 C -0.227 4.227 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.175 1.175 21 H -0.190 1.190 22 H -0.194 1.194 23 C -0.265 4.265 24 C -0.075 4.075 25 N -0.281 5.281 26 C 0.039 3.961 27 N -0.279 5.279 28 H 0.146 0.854 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.202 0.798 32 H 0.285 0.715 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.129 0.871 37 H 0.082 0.918 38 H 0.134 0.866 39 H 0.158 0.842 40 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.047 -33.477 2.920 33.847 hybrid contribution -0.113 1.601 0.411 1.657 sum -4.160 -31.876 3.331 32.319 Atomic orbital electron populations 1.23565 0.92256 1.07691 1.06893 1.85692 1.09784 0.94116 1.89672 1.23760 0.91627 1.00862 0.93539 1.21976 0.99064 0.94186 1.11687 1.18825 0.86750 0.88987 0.89072 1.43670 1.05559 1.08885 1.71045 1.21761 0.93094 0.81169 0.75177 1.90880 1.43673 1.58846 1.44095 1.20561 0.91786 0.90233 1.08399 1.19216 1.08261 0.95071 0.92447 1.20887 0.95961 0.92144 0.98336 1.20442 1.11805 0.94556 0.95930 1.19962 0.94187 0.84270 0.95290 1.83934 1.80696 1.14064 1.35417 1.21865 1.52267 0.89527 0.85294 0.88213 1.26621 0.95993 0.96557 1.03015 1.70198 1.48829 1.09450 1.27481 0.84512 0.78578 0.77725 0.75248 1.17523 1.19018 1.19440 1.21232 1.12056 0.96571 0.96617 1.20950 0.95833 0.91757 0.99006 1.68507 0.99802 1.40524 1.19286 1.25206 0.93420 0.89566 0.87947 1.68793 1.34360 1.04404 1.20333 0.85443 0.89462 0.89494 0.79829 0.71536 0.84321 0.84192 0.83500 0.87133 0.91842 0.86603 0.84238 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.68 113.37 1.10 -0.12 16 2 S -0.03 -0.36 22.74 -56.49 -1.28 -1.64 16 3 C 0.16 2.74 7.00 84.76 0.59 3.34 16 4 C -0.24 -3.61 9.81 22.71 0.22 -3.39 16 5 C 0.40 8.41 7.45 132.75 0.99 9.40 16 6 N -0.64 -9.92 5.38 -308.19 -1.66 -11.58 16 7 C 0.50 11.50 7.78 87.66 0.68 12.18 16 8 O -0.51 -18.08 14.34 -2.98 -0.04 -18.12 16 9 C -0.07 -1.21 5.83 29.10 0.17 -1.04 16 10 C -0.15 -4.53 4.38 -19.83 -0.09 -4.62 16 11 C -0.06 -1.91 9.69 22.25 0.22 -1.69 16 12 C -0.21 -9.35 9.99 22.39 0.22 -9.13 16 13 C 0.11 5.94 6.65 22.58 0.15 6.09 16 14 O -0.23 -14.75 9.76 -22.66 -0.22 -14.97 16 15 C -0.41 -25.00 9.49 67.92 0.64 -24.36 16 16 H 0.10 5.57 5.20 -2.91 -0.02 5.56 16 17 C -0.02 -1.45 5.49 84.83 0.47 -0.98 16 18 N -0.92 -58.08 13.67 21.61 0.30 -57.79 16 19 Si 1.02 44.17 29.55 68.60 2.03 46.19 16 20 H -0.25 -10.10 7.11 99.48 0.71 -9.39 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 23 C -0.25 -11.25 9.17 22.39 0.21 -11.05 16 24 C -0.06 -2.03 9.69 22.25 0.22 -1.81 16 25 N -0.56 -15.44 8.05 -197.61 -1.59 -17.03 16 26 C 0.33 7.69 12.28 180.92 2.22 9.91 16 27 N -0.56 -11.48 9.30 -196.42 -1.83 -13.31 16 28 H 0.13 0.50 8.14 -2.40 -0.02 0.48 16 29 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.18 1.35 8.06 -2.91 -0.02 1.32 16 32 H 0.44 2.10 8.72 -92.71 -0.81 1.30 16 33 H 0.14 1.38 8.08 -2.38 -0.02 1.36 16 34 H 0.14 1.37 8.08 -2.39 -0.02 1.36 16 35 H 0.15 3.90 8.06 -2.91 -0.02 3.88 16 36 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 37 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 38 H 0.12 5.42 5.64 -2.91 -0.02 5.40 16 39 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 40 H 0.21 3.98 8.06 -2.91 -0.02 3.95 16 Total: -1.00 -89.53 367.22 4.00 -85.53 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.30 Total: 19.97 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 8.01 Total: -17.26 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -4.78 Total: -99.70 kcal Atomic # 8 Polarization: -32.83 SS G_CDS: -0.26 Total: -33.09 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -0.36 SS G_CDS: -1.28 Total: -1.64 kcal Total: -89.53 4.00 -85.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417567722.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.140 kcal (2) G-P(sol) polarization free energy of solvation -89.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds