Wall clock time and date at job start Wed Apr 1 2020 03:02:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76202 * 100.00007 * 2 1 4 4 N 1.32551 * 119.19560 * 0.02562 * 3 2 1 5 5 C 1.32711 * 120.63824 * 179.97438 * 4 3 2 6 6 O 1.35515 * 120.46111 * 180.02562 * 5 4 3 7 7 C 1.39450 * 119.07528 * 359.97438 * 5 4 3 8 8 C 1.38210 * 118.51901 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.36380 * 180.02562 * 8 7 5 10 10 N 1.46494 * 109.47597 * 94.99928 * 9 8 7 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39227 * 120.28510 * 356.68670 * 13 11 10 15 15 C 1.38223 * 120.09723 * 180.28291 * 14 13 11 16 16 C 1.38826 * 120.67197 * 359.69417 * 15 14 13 17 17 C 1.37607 * 120.57000 * 0.02562 * 16 15 14 18 18 C 1.40702 * 119.88222 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32820 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99743 * 145.79457 * 19 18 17 21 21 C 1.40273 * 119.99861 * 325.79822 * 19 18 17 22 22 N 1.30629 * 119.99711 * 340.74144 * 21 19 18 23 23 Si 1.86800 * 120.00012 * 160.74702 * 21 19 18 24 24 H 1.48505 * 109.46791 * 269.99431 * 23 21 19 25 25 H 1.48496 * 109.47300 * 29.99461 * 23 21 19 26 26 H 1.48496 * 109.47010 * 149.99877 * 23 21 19 27 27 N 1.32441 * 119.27436 * 0.27537 * 8 7 5 28 28 H 1.09004 * 109.47162 * 59.99689 * 1 2 3 29 29 H 1.08997 * 109.47516 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47686 * 300.00283 * 1 2 3 31 31 H 0.96698 * 114.00040 * 269.97136 * 6 5 4 32 32 H 1.08005 * 120.73835 * 180.02562 * 7 5 4 33 33 H 1.09004 * 109.46984 * 334.99824 * 9 8 7 34 34 H 1.09005 * 109.47130 * 215.00124 * 9 8 7 35 35 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.95480 * 359.97438 * 14 13 11 37 37 H 1.07993 * 119.66771 * 179.71616 * 15 14 13 38 38 H 1.08002 * 119.71786 * 180.02562 * 16 15 14 39 39 H 1.07995 * 120.05544 * 180.02562 * 17 16 15 40 40 H 0.97003 * 120.00596 * 354.83519 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0886 2.5729 0.0005 5 6 1.2861 3.8853 0.0010 6 8 0.2332 4.7384 0.0021 7 6 2.5922 4.3740 0.0016 8 6 3.6358 3.4680 0.0010 9 6 5.0635 3.9505 0.0022 10 7 5.5642 3.9913 1.3783 11 6 6.8264 4.3944 1.6244 12 8 7.5496 4.7248 0.7043 13 6 7.3305 4.4350 3.0094 14 6 6.4872 4.1243 4.0728 15 6 6.9623 4.1693 5.3701 16 6 8.2811 4.5166 5.6297 17 6 9.1399 4.8232 4.5992 18 6 8.6810 4.7860 3.2696 19 6 9.5521 5.0987 2.2073 20 1 9.4538 4.5888 1.2604 21 6 10.5471 6.0724 2.3797 22 7 10.4480 6.9431 3.3484 23 14 12.0136 6.1239 1.2239 24 1 13.1021 5.2721 1.7671 25 1 11.6090 5.6177 -0.1122 26 1 12.4958 7.5228 1.0981 27 7 3.3675 2.1710 -0.0056 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.0726 4.9868 -0.8810 32 1 2.7838 5.4369 0.0024 33 1 5.1097 4.9496 -0.4311 34 1 5.6775 3.2699 -0.5878 35 1 4.9872 3.7282 2.1122 36 1 5.4591 3.8527 3.8842 37 1 6.3009 3.9314 6.1900 38 1 8.6361 4.5464 6.6492 39 1 10.1643 5.0919 4.8106 40 1 9.6516 6.9646 3.9018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418215302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:55 Heat of formation + Delta-G solvation = -8.480658 kcal Electronic energy + Delta-G solvation = -26328.090805 eV Core-core repulsion = 22427.274437 eV Total energy + Delta-G solvation = -3900.816368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.44111 -39.08834 -38.06913 -37.05904 -35.09142 -34.00157 -32.98449 -31.83328 -30.15547 -29.45023 -29.26210 -27.22019 -25.17210 -24.99573 -23.20551 -22.11555 -20.92678 -19.74346 -19.40430 -18.40146 -17.99964 -17.57048 -16.57805 -16.20897 -15.76725 -15.36288 -14.91277 -14.75595 -14.63450 -14.32960 -14.17532 -14.00101 -13.76015 -13.62363 -13.29261 -12.87184 -12.66232 -12.58626 -12.33271 -12.19262 -11.74170 -11.40986 -11.15679 -10.94253 -10.90626 -10.76677 -10.71109 -10.40794 -10.37418 -10.18142 -9.74402 -9.62992 -9.09506 -8.60152 -8.53171 -8.13264 -7.81382 -7.62810 -7.16468 -4.48331 0.33964 0.51386 0.85691 1.74545 2.20718 2.72138 2.91934 3.18020 3.19776 3.30517 3.41468 3.67964 3.99702 4.03470 4.05494 4.24551 4.59298 4.62040 4.77447 4.82216 4.83799 4.98834 5.42831 5.44357 5.51825 5.61608 5.79470 5.85023 6.02217 6.15073 6.45750 6.50468 6.69823 6.88783 6.91180 6.97600 7.25498 7.47319 7.47595 7.57799 7.70420 7.86525 8.05183 8.18374 8.27362 8.70663 8.84016 9.25645 10.02615 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002509 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.932001 B =11158.306727 C =11597.772832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S 0.017 5.983 3 C 0.317 3.683 4 N -0.547 5.547 5 C 0.376 3.624 6 O -0.473 6.473 7 C -0.232 4.232 8 C 0.197 3.803 9 C 0.175 3.825 10 N -0.742 5.742 11 C 0.568 3.432 12 O -0.533 6.533 13 C -0.265 4.265 14 C -0.042 4.042 15 C -0.258 4.258 16 C -0.075 4.075 17 C -0.200 4.200 18 C 0.121 3.879 19 C -0.465 4.465 20 H 0.107 0.893 21 C 0.031 3.969 22 N -0.793 5.793 23 Si 1.073 2.927 24 H -0.275 1.275 25 H -0.272 1.272 26 H -0.277 1.277 27 N -0.491 5.491 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.091 0.909 31 H 0.409 0.591 32 H 0.159 0.841 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.393 0.607 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.107 0.893 40 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.216 -7.087 -7.483 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.250 5.750 3 C -0.058 4.058 4 N -0.277 5.277 5 C 0.185 3.815 6 O -0.280 6.280 7 C -0.260 4.260 8 C 0.048 3.952 9 C 0.050 3.950 10 N -0.398 5.398 11 C 0.362 3.638 12 O -0.411 6.411 13 C -0.270 4.270 14 C -0.061 4.061 15 C -0.278 4.278 16 C -0.094 4.094 17 C -0.219 4.219 18 C 0.117 3.883 19 C -0.492 4.492 20 H 0.124 0.876 21 C -0.191 4.191 22 N -0.416 5.416 23 Si 0.896 3.104 24 H -0.200 1.200 25 H -0.197 1.197 26 H -0.202 1.202 27 N -0.209 5.209 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.110 0.890 31 H 0.268 0.732 32 H 0.177 0.823 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.227 0.773 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.125 0.875 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.693 -7.959 -7.849 19.268 hybrid contribution -2.937 1.217 0.441 3.210 sum -18.630 -6.742 -7.408 21.152 Atomic orbital electron populations 1.23592 0.94379 1.06436 1.07250 1.86049 1.06406 0.92450 1.90074 1.24823 0.86071 1.00364 0.94567 1.68246 1.36079 1.04207 1.19127 1.19332 0.86318 0.85973 0.89851 1.84739 1.48110 1.60836 1.34336 1.22841 0.92448 1.03644 1.07051 1.21800 0.96905 0.87704 0.88791 1.19994 0.86296 1.01688 0.86978 1.45919 1.15389 1.72150 1.06388 1.18377 0.79417 0.76028 0.89928 1.90692 1.55629 1.48439 1.46330 1.19304 0.95039 1.22432 0.90182 1.20704 0.96354 0.95933 0.93092 1.20244 0.96517 1.15788 0.95220 1.20752 0.93853 0.97486 0.97280 1.21256 0.98912 1.08894 0.92833 1.17497 0.89697 0.88667 0.92468 1.21219 1.09602 1.17425 1.00959 0.87571 1.27279 1.01608 0.92282 0.97913 1.70362 1.30082 1.28357 1.12838 0.83520 0.73928 0.77355 0.75594 1.20039 1.19692 1.20164 1.68414 1.20568 1.16663 1.15284 0.89152 0.87444 0.89025 0.73164 0.82311 0.89488 0.89320 0.77269 0.89330 0.88887 0.88824 0.87467 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.62 101.05 0.97 -0.05 16 2 S 0.02 0.17 22.89 -107.50 -2.46 -2.29 16 3 C 0.32 4.07 7.85 -90.87 -0.71 3.36 16 4 N -0.55 -6.53 9.16 -13.50 -0.12 -6.65 16 5 C 0.38 4.08 7.83 -16.72 -0.13 3.95 16 6 O -0.47 -3.97 13.57 -18.24 -0.25 -4.22 16 7 C -0.23 -2.56 9.78 -39.14 -0.38 -2.94 16 8 C 0.20 2.58 6.18 -82.34 -0.51 2.08 16 9 C 0.18 2.61 6.02 -5.20 -0.03 2.57 16 10 N -0.74 -13.17 5.50 -62.56 -0.34 -13.51 16 11 C 0.57 12.95 7.73 -12.52 -0.10 12.85 16 12 O -0.53 -13.70 13.56 5.27 0.07 -13.63 16 13 C -0.26 -6.40 5.92 -104.36 -0.62 -7.02 16 14 C -0.04 -0.89 9.53 -39.22 -0.37 -1.27 16 15 C -0.26 -5.45 10.03 -39.37 -0.39 -5.85 16 16 C -0.07 -1.65 10.01 -39.59 -0.40 -2.05 16 17 C -0.20 -4.96 7.87 -38.88 -0.31 -5.26 16 18 C 0.12 3.20 5.17 -106.54 -0.55 2.65 16 19 C -0.47 -12.65 7.65 -37.81 -0.29 -12.94 16 20 H 0.11 3.01 5.92 -52.49 -0.31 2.70 16 21 C 0.03 0.80 5.04 -17.30 -0.09 0.71 16 22 N -0.79 -21.06 12.57 55.56 0.70 -20.36 16 23 Si 1.07 22.37 29.98 -169.99 -5.10 17.27 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 27 N -0.49 -6.98 10.33 -9.74 -0.10 -7.08 16 28 H 0.09 0.61 8.11 -51.91 -0.42 0.19 16 29 H 0.11 0.49 8.14 -51.92 -0.42 0.06 16 30 H 0.09 0.69 8.11 -51.92 -0.42 0.27 16 31 H 0.41 1.20 9.06 45.56 0.41 1.61 16 32 H 0.16 1.44 8.06 -52.48 -0.42 1.01 16 33 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 34 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.39 6.44 6.51 -40.82 -0.27 6.17 16 36 H 0.09 1.60 6.41 -52.48 -0.34 1.27 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 39 H 0.11 2.71 6.94 -52.49 -0.36 2.34 16 40 H 0.30 8.11 6.55 -40.82 -0.27 7.84 16 LS Contribution 361.25 15.07 5.44 5.44 Total: -1.00 -32.41 361.25 -9.37 -41.78 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: -3.30 Total: 12.45 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: -3.91 Total: -9.20 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: 0.13 Total: -47.60 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.18 Total: -17.85 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.10 Total: 17.27 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -2.46 Total: -2.29 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.41 -9.37 -41.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418215302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.295 kcal (2) G-P(sol) polarization free energy of solvation -32.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds