Wall clock time and date at job start Wed Apr 1 2020 03:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80993 * 1 3 3 C 1.76202 * 100.00007 * 2 1 4 4 N 1.32551 * 119.19560 * 0.02562 * 3 2 1 5 5 C 1.32711 * 120.63824 * 179.97438 * 4 3 2 6 6 O 1.35515 * 120.46111 * 180.02562 * 5 4 3 7 7 C 1.39450 * 119.07528 * 359.97438 * 5 4 3 8 8 C 1.38210 * 118.51901 * 0.02562 * 7 5 4 9 9 C 1.50698 * 120.36380 * 180.02562 * 8 7 5 10 10 N 1.46494 * 109.47597 * 94.99928 * 9 8 7 11 11 C 1.34776 * 120.00009 * 179.97438 * 10 9 8 12 12 O 1.21609 * 120.00181 * 0.02562 * 11 10 9 13 13 C 1.47435 * 119.99851 * 180.02562 * 11 10 9 14 14 C 1.39227 * 120.28510 * 356.68670 * 13 11 10 15 15 C 1.38223 * 120.09723 * 180.28291 * 14 13 11 16 16 C 1.38826 * 120.67197 * 359.69417 * 15 14 13 17 17 C 1.37607 * 120.57000 * 0.02562 * 16 15 14 18 18 C 1.40702 * 119.88222 * 0.02562 * 17 16 15 19 19 C 1.40891 * 120.32820 * 179.97438 * 18 17 16 20 20 H 1.07998 * 119.99743 * 145.79457 * 19 18 17 21 21 C 1.40273 * 119.99861 * 325.79822 * 19 18 17 22 22 N 1.30629 * 119.99711 * 340.74144 * 21 19 18 23 23 Si 1.86800 * 120.00012 * 160.74702 * 21 19 18 24 24 H 1.48505 * 109.46791 * 269.99431 * 23 21 19 25 25 H 1.48496 * 109.47300 * 29.99461 * 23 21 19 26 26 H 1.48496 * 109.47010 * 149.99877 * 23 21 19 27 27 N 1.32441 * 119.27436 * 0.27537 * 8 7 5 28 28 H 1.09004 * 109.47162 * 59.99689 * 1 2 3 29 29 H 1.08997 * 109.47516 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47686 * 300.00283 * 1 2 3 31 31 H 0.96698 * 114.00040 * 269.97136 * 6 5 4 32 32 H 1.08005 * 120.73835 * 180.02562 * 7 5 4 33 33 H 1.09004 * 109.46984 * 334.99824 * 9 8 7 34 34 H 1.09005 * 109.47130 * 215.00124 * 9 8 7 35 35 H 0.96994 * 119.99831 * 359.97438 * 10 9 8 36 36 H 1.08005 * 119.95480 * 359.97438 * 14 13 11 37 37 H 1.07993 * 119.66771 * 179.71616 * 15 14 13 38 38 H 1.08002 * 119.71786 * 180.02562 * 16 15 14 39 39 H 1.07995 * 120.05544 * 180.02562 * 17 16 15 40 40 H 0.97003 * 120.00596 * 354.83519 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8099 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.0886 2.5729 0.0005 5 6 1.2861 3.8853 0.0010 6 8 0.2332 4.7384 0.0021 7 6 2.5922 4.3740 0.0016 8 6 3.6358 3.4680 0.0010 9 6 5.0635 3.9505 0.0022 10 7 5.5642 3.9913 1.3783 11 6 6.8264 4.3944 1.6244 12 8 7.5496 4.7248 0.7043 13 6 7.3305 4.4350 3.0094 14 6 6.4872 4.1243 4.0728 15 6 6.9623 4.1693 5.3701 16 6 8.2811 4.5166 5.6297 17 6 9.1399 4.8232 4.5992 18 6 8.6810 4.7860 3.2696 19 6 9.5521 5.0987 2.2073 20 1 9.4538 4.5888 1.2604 21 6 10.5471 6.0724 2.3797 22 7 10.4480 6.9431 3.3484 23 14 12.0136 6.1239 1.2239 24 1 13.1021 5.2721 1.7671 25 1 11.6090 5.6177 -0.1122 26 1 12.4958 7.5228 1.0981 27 7 3.3675 2.1710 -0.0056 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.0726 4.9868 -0.8810 32 1 2.7838 5.4369 0.0024 33 1 5.1097 4.9496 -0.4311 34 1 5.6775 3.2699 -0.5878 35 1 4.9872 3.7282 2.1122 36 1 5.4591 3.8527 3.8842 37 1 6.3009 3.9314 6.1900 38 1 8.6361 4.5464 6.6492 39 1 10.1643 5.0919 4.8106 40 1 9.6516 6.9646 3.9018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418215302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:54 Heat of formation + Delta-G solvation = -32.783387 kcal Electronic energy + Delta-G solvation = -26329.144651 eV Core-core repulsion = 22427.274437 eV Total energy + Delta-G solvation = -3901.870214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.35281 -40.81929 -38.99298 -38.67507 -36.46591 -35.77652 -34.24618 -32.83185 -31.86500 -31.22354 -29.92294 -28.51038 -26.98226 -25.89812 -24.49498 -23.59916 -22.72760 -21.34468 -20.41773 -19.92901 -19.21829 -18.37817 -18.12768 -17.31395 -16.80098 -16.57016 -16.51099 -16.13340 -15.88454 -15.71197 -15.60722 -15.41002 -15.25927 -14.49832 -14.39797 -14.24171 -14.07023 -13.92677 -13.60124 -13.44734 -13.24362 -12.91795 -12.69279 -12.50706 -12.19070 -12.06246 -11.96336 -11.87597 -11.49050 -11.47198 -11.24130 -10.95601 -10.66699 -10.39702 -10.14070 -9.63364 -9.50984 -9.10708 -8.92895 -6.46502 -0.56616 -0.38355 0.05289 0.37621 0.89465 1.09294 1.48326 1.63546 1.78986 2.01794 2.20505 2.27559 2.32017 2.53741 2.73625 2.82443 3.33312 3.54960 3.73714 3.91756 4.09453 4.17720 4.22257 4.30151 4.34657 4.41092 4.45823 4.54627 4.77679 4.85991 4.86985 4.93105 5.12330 5.38827 5.41438 5.61115 5.64427 5.69081 5.87517 5.95581 6.18231 6.31866 6.40097 6.56776 6.59010 6.81537 6.89656 7.50804 8.04786 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002509 C = 0.002414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.932001 B =11158.306727 C =11597.772832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.001 6.001 3 C 0.305 3.695 4 N -0.549 5.549 5 C 0.383 3.617 6 O -0.473 6.473 7 C -0.225 4.225 8 C 0.187 3.813 9 C 0.178 3.822 10 N -0.723 5.723 11 C 0.565 3.435 12 O -0.570 6.570 13 C -0.282 4.282 14 C -0.042 4.042 15 C -0.245 4.245 16 C -0.071 4.071 17 C -0.224 4.224 18 C 0.097 3.903 19 C -0.507 4.507 20 H 0.083 0.917 21 C -0.002 4.002 22 N -0.816 5.816 23 Si 1.118 2.882 24 H -0.257 1.257 25 H -0.273 1.273 26 H -0.267 1.267 27 N -0.519 5.519 28 H 0.093 0.907 29 H 0.135 0.865 30 H 0.088 0.912 31 H 0.433 0.567 32 H 0.179 0.821 33 H 0.098 0.902 34 H 0.075 0.925 35 H 0.402 0.598 36 H 0.126 0.874 37 H 0.134 0.866 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.109 -7.712 -6.840 23.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.233 5.767 3 C -0.070 4.070 4 N -0.279 5.279 5 C 0.191 3.809 6 O -0.284 6.284 7 C -0.252 4.252 8 C 0.039 3.961 9 C 0.054 3.946 10 N -0.378 5.378 11 C 0.358 3.642 12 O -0.451 6.451 13 C -0.287 4.287 14 C -0.061 4.061 15 C -0.264 4.264 16 C -0.089 4.089 17 C -0.243 4.243 18 C 0.093 3.907 19 C -0.534 4.534 20 H 0.101 0.899 21 C -0.218 4.218 22 N -0.440 5.440 23 Si 0.935 3.065 24 H -0.181 1.181 25 H -0.198 1.198 26 H -0.192 1.192 27 N -0.239 5.239 28 H 0.112 0.888 29 H 0.153 0.847 30 H 0.107 0.893 31 H 0.297 0.703 32 H 0.197 0.803 33 H 0.116 0.884 34 H 0.093 0.907 35 H 0.238 0.762 36 H 0.144 0.856 37 H 0.152 0.848 38 H 0.143 0.857 39 H 0.109 0.891 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.651 -8.600 -7.203 21.765 hybrid contribution -2.411 1.284 0.317 2.750 sum -21.062 -7.316 -6.886 23.336 Atomic orbital electron populations 1.23668 0.91346 1.08194 1.07182 1.86097 1.09729 0.91271 1.89600 1.25153 0.85775 1.01449 0.94585 1.68326 1.35653 1.04654 1.19219 1.19440 0.86859 0.85954 0.88600 1.84702 1.47123 1.60075 1.36512 1.22961 0.91979 1.04234 1.06028 1.21458 0.96120 0.88057 0.90419 1.20015 0.87496 1.02161 0.84916 1.45625 1.13752 1.70256 1.08161 1.18333 0.80639 0.75964 0.89214 1.90674 1.57058 1.50159 1.47164 1.19708 0.94971 1.21970 0.92025 1.21083 0.97708 0.94757 0.92502 1.20779 0.96407 1.12972 0.96274 1.21151 0.94077 0.95605 0.98090 1.21220 0.98988 1.10860 0.93235 1.17887 0.90824 0.88852 0.93166 1.21133 1.12225 1.19498 1.00574 0.89937 1.28468 1.03484 0.91235 0.98573 1.70469 1.29705 1.29483 1.14309 0.82985 0.71661 0.78018 0.73820 1.18136 1.19784 1.19186 1.68353 1.21689 1.17297 1.16514 0.88795 0.84711 0.89349 0.70271 0.80320 0.88362 0.90702 0.76194 0.85627 0.84847 0.85696 0.89056 0.90408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.62 113.37 1.09 -0.46 16 2 S 0.00 -0.01 22.89 -56.49 -1.29 -1.30 16 3 C 0.31 7.44 7.85 180.43 1.42 8.86 16 4 N -0.55 -11.94 9.16 -309.33 -2.83 -14.78 16 5 C 0.38 7.33 7.83 84.85 0.66 8.00 16 6 O -0.47 -6.41 13.57 -88.17 -1.20 -7.60 16 7 C -0.22 -4.44 9.78 22.56 0.22 -4.22 16 8 C 0.19 4.70 6.18 42.46 0.26 4.97 16 9 C 0.18 5.25 6.02 85.63 0.52 5.77 16 10 N -0.72 -25.23 5.50 -470.10 -2.58 -27.81 16 11 C 0.56 26.18 7.73 86.67 0.67 26.85 16 12 O -0.57 -30.55 13.56 -4.06 -0.06 -30.60 16 13 C -0.28 -13.71 5.92 -19.70 -0.12 -13.83 16 14 C -0.04 -1.69 9.53 22.50 0.21 -1.47 16 15 C -0.25 -9.51 10.03 22.41 0.22 -9.28 16 16 C -0.07 -3.00 10.01 22.26 0.22 -2.78 16 17 C -0.22 -11.32 7.87 22.72 0.18 -11.14 16 18 C 0.10 5.29 5.17 -21.11 -0.11 5.18 16 19 C -0.51 -29.08 7.65 23.41 0.18 -28.90 16 20 H 0.08 5.01 5.92 -2.91 -0.02 5.00 16 21 C 0.00 -0.11 5.04 85.37 0.43 0.32 16 22 N -0.82 -45.24 12.57 21.88 0.28 -44.96 16 23 Si 1.12 46.82 29.98 68.60 2.06 48.87 16 24 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 27 N -0.52 -14.37 10.33 -184.73 -1.91 -16.28 16 28 H 0.09 1.05 8.11 -2.39 -0.02 1.03 16 29 H 0.13 0.81 8.14 -2.40 -0.02 0.79 16 30 H 0.09 1.12 8.11 -2.40 -0.02 1.10 16 31 H 0.43 1.04 9.06 -74.06 -0.67 0.37 16 32 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.10 2.68 8.06 -2.38 -0.02 2.66 16 34 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 35 H 0.40 12.45 6.51 -92.71 -0.60 11.85 16 36 H 0.13 4.07 6.41 -2.91 -0.02 4.05 16 37 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 38 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.09 4.82 6.94 -2.91 -0.02 4.80 16 40 H 0.28 16.19 6.55 -92.71 -0.61 15.58 16 Total: -1.00 -73.97 361.25 -1.46 -75.43 By element: Atomic # 1 Polarization: 31.17 SS G_CDS: 0.02 Total: 31.18 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 6.06 Total: -12.15 kcal Atomic # 7 Polarization: -96.77 SS G_CDS: -7.05 Total: -103.83 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.25 Total: -38.21 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.06 Total: 48.87 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -1.29 Total: -1.30 kcal Total: -73.97 -1.46 -75.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418215302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.649 kcal (2) G-P(sol) polarization free energy of solvation -73.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds