Wall clock time and date at job start Wed Apr 1 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00426 * 2 1 4 4 C 1.34784 * 119.99529 * 180.02562 * 2 1 3 5 5 O 1.21507 * 120.00289 * 4.45181 * 4 2 1 6 6 C 1.48165 * 119.99517 * 184.45820 * 4 2 1 7 7 C 1.39994 * 120.88060 * 141.67714 * 6 4 2 8 8 C 1.38007 * 119.16110 * 180.02562 * 7 6 4 9 9 N 1.31880 * 120.99705 * 359.97438 * 8 7 6 10 10 C 1.32314 * 121.95519 * 359.97438 * 9 8 7 11 11 N 1.39244 * 119.64028 * 179.97438 * 10 9 8 12 12 C 1.34774 * 119.99901 * 354.72138 * 11 10 9 13 13 O 1.21768 * 120.00400 * 5.62453 * 12 11 10 14 14 C 1.46158 * 119.99860 * 185.62640 * 12 11 10 15 15 S 1.75665 * 125.23258 * 0.02562 * 14 12 11 16 16 C 1.75467 * 92.09706 * 180.02562 * 15 14 12 17 17 C 1.32764 * 111.37190 * 0.02562 * 16 15 14 18 18 C 1.39597 * 125.22864 * 179.71977 * 14 12 11 19 19 C 1.40501 * 123.72421 * 359.97438 * 18 14 12 20 20 H 1.08004 * 119.99621 * 28.66944 * 19 18 14 21 21 C 1.40318 * 120.00406 * 208.67744 * 19 18 14 22 22 N 1.30635 * 119.99842 * 7.22101 * 21 19 18 23 23 Si 1.86800 * 120.00011 * 187.22007 * 21 19 18 24 24 H 1.48495 * 109.47057 * 90.00093 * 23 21 19 25 25 H 1.48500 * 109.47102 * 209.99696 * 23 21 19 26 26 H 1.48501 * 109.47363 * 329.99827 * 23 21 19 27 27 C 1.39068 * 120.71932 * 0.02562 * 10 9 8 28 28 H 1.09004 * 109.47235 * 270.00337 * 1 2 3 29 29 H 1.09003 * 109.47016 * 29.99742 * 1 2 3 30 30 H 1.08993 * 109.47542 * 149.99916 * 1 2 3 31 31 H 1.09003 * 109.47691 * 268.60012 * 3 2 1 32 32 H 1.09003 * 109.47212 * 28.59868 * 3 2 1 33 33 H 1.08997 * 109.47544 * 148.59844 * 3 2 1 34 34 H 1.08002 * 120.41903 * 0.04312 * 7 6 4 35 35 H 1.08002 * 119.49883 * 179.97438 * 8 7 6 36 36 H 0.96995 * 120.00125 * 174.72025 * 11 10 9 37 37 H 1.07997 * 124.31391 * 179.97438 * 16 15 14 38 38 H 1.07995 * 122.78451 * 180.02562 * 17 16 15 39 39 H 0.97006 * 120.00050 * 180.02562 * 22 21 19 40 40 H 1.08005 * 120.53424 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5340 -2.2180 -0.0827 6 6 3.6171 -1.1693 0.0992 7 6 4.2851 -2.1414 0.8533 8 6 5.6631 -2.1095 0.9223 9 7 6.3534 -1.1805 0.2900 10 6 5.7653 -0.2428 -0.4349 11 7 6.5414 0.7153 -1.0820 12 6 7.8740 0.7495 -0.8832 13 8 8.4132 -0.1181 -0.2204 14 6 8.6719 1.8280 -1.4632 15 16 8.0391 3.1454 -2.4378 16 6 9.6342 3.8485 -2.6388 17 6 10.5609 3.1323 -2.0134 18 6 10.0532 1.9729 -1.3227 19 6 10.8605 1.0841 -0.5930 20 1 10.5726 0.0476 -0.4973 21 6 12.0407 1.5432 0.0114 22 7 12.3178 2.8198 0.0172 23 14 13.2156 0.3288 0.8079 24 1 14.2052 -0.1347 -0.1976 25 1 13.9251 0.9910 1.9319 26 1 12.4506 -0.8352 1.3227 27 6 4.3806 -0.2030 -0.5568 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 2.4010 1.5708 -1.0273 32 1 1.5979 2.0345 0.4919 33 1 3.1388 1.1447 0.5354 34 1 3.7291 -2.9069 1.3743 35 1 6.1839 -2.8565 1.5028 36 1 6.1230 1.3581 -1.6758 37 1 9.8364 4.7485 -3.2003 38 1 11.6073 3.3994 -2.0167 39 1 13.1338 3.1371 0.4347 40 1 3.9037 0.5641 -1.1489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001420898299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:13 Heat of formation + Delta-G solvation = 18.449915 kcal Electronic energy + Delta-G solvation = -26666.743354 eV Core-core repulsion = 22767.094783 eV Total energy + Delta-G solvation = -3899.648571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.84885 -39.52030 -37.97580 -36.13697 -35.89007 -34.03261 -33.15447 -32.63470 -30.12998 -28.95123 -28.28260 -26.89275 -26.33933 -23.99043 -23.27578 -22.18539 -20.79495 -19.49049 -18.91247 -18.12753 -17.62474 -16.66046 -16.28480 -15.93096 -15.92192 -15.72682 -15.26014 -15.18161 -14.59637 -14.13414 -14.07648 -13.76269 -13.48251 -13.40221 -13.05545 -12.87900 -12.76532 -12.54966 -12.30181 -12.24203 -11.96191 -11.82008 -11.52523 -11.21262 -11.12353 -10.49013 -10.39844 -10.27702 -10.21413 -9.75011 -9.66219 -9.42521 -9.29642 -9.01654 -8.27331 -7.92993 -7.57709 -7.23143 -7.12751 -4.64287 0.91864 1.27497 2.06108 2.58116 2.74736 2.92373 2.96919 2.98572 3.05901 3.44476 3.52807 3.68432 3.80149 3.95759 4.18494 4.45025 4.64929 4.81174 4.94214 5.00153 5.08364 5.11058 5.13518 5.24802 5.32947 5.45039 5.48945 5.66798 5.76506 5.94498 6.03376 6.17121 6.36112 6.52237 6.75727 6.97739 7.00388 7.07265 7.14839 7.34154 7.55175 7.84868 7.88336 8.26428 8.41142 8.49348 8.63427 9.40238 9.79402 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.002931 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.655671 B = 9551.951762 C =11049.721622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.616 5.616 3 C 0.067 3.933 4 C 0.564 3.436 5 O -0.531 6.531 6 C -0.059 4.059 7 C -0.176 4.176 8 C 0.138 3.862 9 N -0.458 5.458 10 C 0.386 3.614 11 N -0.667 5.667 12 C 0.584 3.416 13 O -0.491 6.491 14 C -0.428 4.428 15 S -0.055 6.055 16 C -0.200 4.200 17 C -0.095 4.095 18 C 0.144 3.856 19 C -0.372 4.372 20 H 0.110 0.890 21 C 0.067 3.933 22 N -0.776 5.776 23 Si 0.925 3.075 24 H -0.264 1.264 25 H -0.274 1.274 26 H -0.252 1.252 27 C -0.205 4.205 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.137 0.863 35 H 0.162 0.838 36 H 0.407 0.593 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.289 0.711 40 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.626 0.565 0.046 13.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.349 5.349 3 C -0.076 4.076 4 C 0.353 3.647 5 O -0.407 6.407 6 C -0.070 4.070 7 C -0.198 4.198 8 C -0.022 4.022 9 N -0.173 5.173 10 C 0.153 3.847 11 N -0.311 5.311 12 C 0.380 3.620 13 O -0.367 6.367 14 C -0.546 4.546 15 S 0.199 5.801 16 C -0.334 4.334 17 C -0.127 4.127 18 C 0.133 3.867 19 C -0.402 4.402 20 H 0.128 0.872 21 C -0.155 4.155 22 N -0.400 5.400 23 Si 0.748 3.252 24 H -0.189 1.189 25 H -0.199 1.199 26 H -0.175 1.175 27 C -0.229 4.229 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.243 0.757 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.101 0.899 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.788 0.087 0.078 13.788 hybrid contribution 0.751 0.016 0.374 0.839 sum -13.037 0.103 0.452 13.045 Atomic orbital electron populations 1.21682 0.78630 1.03419 1.02039 1.47622 1.07256 1.06376 1.73674 1.22273 0.98285 0.84763 1.02269 1.18379 0.86927 0.83386 0.76044 1.90766 1.69612 1.31061 1.49264 1.19808 0.92490 0.96034 0.98700 1.21969 0.95842 0.99747 1.02290 1.22740 0.90196 0.94819 0.94403 1.67767 1.39350 1.02295 1.07871 1.18520 0.87010 0.88689 0.90511 1.43955 1.08843 1.31748 1.46600 1.17050 0.79110 0.85206 0.80591 1.90800 1.69232 1.37883 1.38767 1.22515 0.95818 1.07503 1.28796 1.82657 1.11951 1.25387 1.60066 1.24901 0.95647 1.04472 1.08412 1.21638 1.00123 0.95111 0.95863 1.17908 0.89181 0.90145 0.89441 1.19996 1.00559 0.98449 1.21228 0.87185 1.26363 0.97983 0.96077 0.95056 1.69657 1.23730 1.15042 1.31565 0.85992 0.79216 0.81009 0.79008 1.18880 1.19910 1.17515 1.21852 0.92879 1.02103 1.06115 0.92514 0.90947 0.90279 0.91860 0.90738 0.89619 0.84471 0.82067 0.75697 0.84314 0.84028 0.89946 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.67 10.47 59.85 0.63 1.29 16 2 N -0.62 -6.32 3.27 -190.53 -0.62 -6.95 16 3 C 0.07 0.53 8.88 59.84 0.53 1.06 16 4 C 0.56 7.62 7.41 -12.18 -0.09 7.53 16 5 O -0.53 -8.65 16.49 5.36 0.09 -8.56 16 6 C -0.06 -0.82 5.27 -104.68 -0.55 -1.37 16 7 C -0.18 -2.42 9.75 -39.01 -0.38 -2.80 16 8 C 0.14 2.11 11.17 -17.62 -0.20 1.91 16 9 N -0.46 -8.88 7.85 -12.43 -0.10 -8.98 16 10 C 0.39 6.84 7.42 -154.88 -1.15 5.69 16 11 N -0.67 -12.65 5.37 -12.78 -0.07 -12.72 16 12 C 0.58 13.85 7.72 -13.08 -0.10 13.75 16 13 O -0.49 -13.13 12.79 5.13 0.07 -13.06 16 14 C -0.43 -10.30 6.50 -35.90 -0.23 -10.53 16 15 S -0.05 -1.09 22.26 -107.50 -2.39 -3.49 16 16 C -0.20 -4.11 11.07 28.86 0.32 -3.79 16 17 C -0.10 -2.20 9.01 -39.12 -0.35 -2.56 16 18 C 0.14 3.69 5.62 -106.20 -0.60 3.09 16 19 C -0.37 -9.68 8.38 -37.95 -0.32 -10.00 16 20 H 0.11 3.02 6.25 -52.48 -0.33 2.69 16 21 C 0.07 1.59 5.41 -17.28 -0.09 1.50 16 22 N -0.78 -18.23 11.03 55.57 0.61 -17.62 16 23 Si 0.92 18.15 29.57 -169.99 -5.03 13.12 16 24 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 H -0.25 -5.15 7.11 56.52 0.40 -4.75 16 27 C -0.20 -2.82 7.45 -38.79 -0.29 -3.11 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 30 H 0.08 0.72 7.36 -51.93 -0.38 0.33 16 31 H 0.06 0.43 7.12 -51.93 -0.37 0.06 16 32 H 0.07 0.43 8.06 -51.93 -0.42 0.01 16 33 H 0.09 0.79 5.57 -51.93 -0.29 0.50 16 34 H 0.14 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.16 2.02 8.06 -52.49 -0.42 1.59 16 36 H 0.41 6.54 7.79 -40.82 -0.32 6.23 16 37 H 0.14 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.14 3.26 6.69 -52.49 -0.35 2.90 16 39 H 0.29 6.10 8.29 -40.82 -0.34 5.76 16 40 H 0.14 1.54 5.44 -52.48 -0.29 1.25 16 LS Contribution 354.43 15.07 5.34 5.34 Total: -1.00 -31.95 354.43 -8.96 -40.91 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -3.99 Total: 10.32 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -2.87 Total: 1.68 kcal Atomic # 7 Polarization: -46.08 SS G_CDS: -0.18 Total: -46.25 kcal Atomic # 8 Polarization: -21.78 SS G_CDS: 0.15 Total: -21.62 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: -1.09 SS G_CDS: -2.39 Total: -3.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.95 -8.96 -40.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420898299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.358 kcal (2) G-P(sol) polarization free energy of solvation -31.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds