Wall clock time and date at job start Wed Apr 1 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46493 * 120.00426 * 2 1 4 4 C 1.34784 * 119.99529 * 180.02562 * 2 1 3 5 5 O 1.21507 * 120.00289 * 4.45181 * 4 2 1 6 6 C 1.48165 * 119.99517 * 184.45820 * 4 2 1 7 7 C 1.39994 * 120.88060 * 141.67714 * 6 4 2 8 8 C 1.38007 * 119.16110 * 180.02562 * 7 6 4 9 9 N 1.31880 * 120.99705 * 359.97438 * 8 7 6 10 10 C 1.32314 * 121.95519 * 359.97438 * 9 8 7 11 11 N 1.39244 * 119.64028 * 179.97438 * 10 9 8 12 12 C 1.34774 * 119.99901 * 354.72138 * 11 10 9 13 13 O 1.21768 * 120.00400 * 5.62453 * 12 11 10 14 14 C 1.46158 * 119.99860 * 185.62640 * 12 11 10 15 15 S 1.75665 * 125.23258 * 0.02562 * 14 12 11 16 16 C 1.75467 * 92.09706 * 180.02562 * 15 14 12 17 17 C 1.32764 * 111.37190 * 0.02562 * 16 15 14 18 18 C 1.39597 * 125.22864 * 179.71977 * 14 12 11 19 19 C 1.40501 * 123.72421 * 359.97438 * 18 14 12 20 20 H 1.08004 * 119.99621 * 28.66944 * 19 18 14 21 21 C 1.40318 * 120.00406 * 208.67744 * 19 18 14 22 22 N 1.30635 * 119.99842 * 7.22101 * 21 19 18 23 23 Si 1.86800 * 120.00011 * 187.22007 * 21 19 18 24 24 H 1.48495 * 109.47057 * 90.00093 * 23 21 19 25 25 H 1.48500 * 109.47102 * 209.99696 * 23 21 19 26 26 H 1.48501 * 109.47363 * 329.99827 * 23 21 19 27 27 C 1.39068 * 120.71932 * 0.02562 * 10 9 8 28 28 H 1.09004 * 109.47235 * 270.00337 * 1 2 3 29 29 H 1.09003 * 109.47016 * 29.99742 * 1 2 3 30 30 H 1.08993 * 109.47542 * 149.99916 * 1 2 3 31 31 H 1.09003 * 109.47691 * 268.60012 * 3 2 1 32 32 H 1.09003 * 109.47212 * 28.59868 * 3 2 1 33 33 H 1.08997 * 109.47544 * 148.59844 * 3 2 1 34 34 H 1.08002 * 120.41903 * 0.04312 * 7 6 4 35 35 H 1.08002 * 119.49883 * 179.97438 * 8 7 6 36 36 H 0.96995 * 120.00125 * 174.72025 * 11 10 9 37 37 H 1.07997 * 124.31391 * 179.97438 * 16 15 14 38 38 H 1.07995 * 122.78451 * 180.02562 * 17 16 15 39 39 H 0.97006 * 120.00050 * 180.02562 * 22 21 19 40 40 H 1.08005 * 120.53424 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.1388 -1.1673 -0.0005 5 8 1.5340 -2.2180 -0.0827 6 6 3.6171 -1.1693 0.0992 7 6 4.2851 -2.1414 0.8533 8 6 5.6631 -2.1095 0.9223 9 7 6.3534 -1.1805 0.2900 10 6 5.7653 -0.2428 -0.4349 11 7 6.5414 0.7153 -1.0820 12 6 7.8740 0.7495 -0.8832 13 8 8.4132 -0.1181 -0.2204 14 6 8.6719 1.8280 -1.4632 15 16 8.0391 3.1454 -2.4378 16 6 9.6342 3.8485 -2.6388 17 6 10.5609 3.1323 -2.0134 18 6 10.0532 1.9729 -1.3227 19 6 10.8605 1.0841 -0.5930 20 1 10.5726 0.0476 -0.4973 21 6 12.0407 1.5432 0.0114 22 7 12.3178 2.8198 0.0172 23 14 13.2156 0.3288 0.8079 24 1 14.2052 -0.1347 -0.1976 25 1 13.9251 0.9910 1.9319 26 1 12.4506 -0.8352 1.3227 27 6 4.3806 -0.2030 -0.5568 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5138 31 1 2.4010 1.5708 -1.0273 32 1 1.5979 2.0345 0.4919 33 1 3.1388 1.1447 0.5354 34 1 3.7291 -2.9069 1.3743 35 1 6.1839 -2.8565 1.5028 36 1 6.1230 1.3581 -1.6758 37 1 9.8364 4.7485 -3.2003 38 1 11.6073 3.3994 -2.0167 39 1 13.1338 3.1371 0.4347 40 1 3.9037 0.5641 -1.1489 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001420898299.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:13 Heat of formation + Delta-G solvation = -1.782076 kcal Electronic energy + Delta-G solvation = -26667.620679 eV Core-core repulsion = 22767.094783 eV Total energy + Delta-G solvation = -3900.525896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.03681 -40.76043 -39.52342 -37.85208 -36.80746 -35.63664 -34.91953 -33.79797 -31.54768 -30.60547 -29.03907 -28.09498 -27.74235 -25.17895 -24.65364 -23.68386 -22.27036 -20.70097 -20.65897 -19.70281 -18.79022 -17.86364 -17.59969 -17.32443 -17.06815 -16.99559 -16.72679 -16.38088 -16.08285 -15.68057 -15.46346 -15.12916 -14.66543 -14.47317 -14.23784 -14.22815 -14.04668 -13.73290 -13.55192 -13.48066 -13.17972 -13.05135 -12.92589 -12.78828 -12.72734 -12.10733 -12.05201 -11.75344 -11.48631 -11.42328 -11.11049 -10.91460 -10.76372 -9.88132 -9.81917 -9.44495 -9.20208 -8.91810 -8.86245 -6.47529 -0.22807 -0.01319 0.36386 1.33422 1.33944 1.34937 1.47632 1.54754 1.71712 1.84481 1.96796 2.10422 2.17686 2.45815 2.90087 3.19288 3.29016 3.52132 3.86447 3.89659 4.07590 4.21746 4.37946 4.38435 4.44018 4.56950 4.58411 4.72416 4.79755 4.87672 4.91406 4.96665 4.99905 5.22351 5.27178 5.36843 5.37706 5.55435 5.73929 5.84089 6.09942 6.29871 6.43012 6.61048 6.77056 6.87742 7.16218 7.68518 8.07884 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.015477 B = 0.002931 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.655671 B = 9551.951762 C =11049.721622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.608 5.608 3 C 0.058 3.942 4 C 0.562 3.438 5 O -0.566 6.566 6 C -0.065 4.065 7 C -0.160 4.160 8 C 0.125 3.875 9 N -0.507 5.507 10 C 0.355 3.645 11 N -0.659 5.659 12 C 0.579 3.421 13 O -0.534 6.534 14 C -0.461 4.461 15 S 0.019 5.981 16 C -0.187 4.187 17 C -0.127 4.127 18 C 0.118 3.882 19 C -0.414 4.414 20 H 0.080 0.920 21 C 0.038 3.962 22 N -0.794 5.794 23 Si 0.985 3.015 24 H -0.250 1.250 25 H -0.256 1.256 26 H -0.274 1.274 27 C -0.175 4.175 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.157 0.843 35 H 0.180 0.820 36 H 0.420 0.580 37 H 0.179 0.821 38 H 0.136 0.864 39 H 0.300 0.700 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 2.307 -0.485 15.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.339 5.339 3 C -0.083 4.083 4 C 0.350 3.650 5 O -0.446 6.446 6 C -0.076 4.076 7 C -0.182 4.182 8 C -0.033 4.033 9 N -0.223 5.223 10 C 0.123 3.877 11 N -0.305 5.305 12 C 0.375 3.625 13 O -0.412 6.412 14 C -0.580 4.580 15 S 0.274 5.726 16 C -0.321 4.321 17 C -0.160 4.160 18 C 0.107 3.893 19 C -0.444 4.444 20 H 0.098 0.902 21 C -0.182 4.182 22 N -0.418 5.418 23 Si 0.805 3.195 24 H -0.174 1.174 25 H -0.180 1.180 26 H -0.198 1.198 27 C -0.199 4.199 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.083 0.917 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.174 0.826 35 H 0.197 0.803 36 H 0.258 0.742 37 H 0.196 0.804 38 H 0.154 0.846 39 H 0.112 0.888 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.957 1.884 -0.468 16.075 hybrid contribution 1.113 -0.484 0.521 1.321 sum -14.844 1.400 0.054 14.910 Atomic orbital electron populations 1.21895 0.76984 1.04320 1.02988 1.47766 1.08398 1.06137 1.71613 1.22486 0.98050 0.84194 1.03612 1.18280 0.86464 0.83980 0.76315 1.90755 1.69955 1.32450 1.51410 1.20025 0.93250 0.95886 0.98451 1.22205 0.95258 0.99624 1.01159 1.23041 0.91004 0.94646 0.94565 1.67606 1.41712 1.03756 1.09214 1.18700 0.88196 0.88976 0.91797 1.43501 1.07405 1.32550 1.47027 1.17214 0.80588 0.84670 0.79980 1.90765 1.70652 1.39321 1.40471 1.23007 0.96285 1.09193 1.29500 1.82203 1.10360 1.22328 1.57694 1.25436 0.95590 1.04654 1.06407 1.21505 1.00584 0.95852 0.98025 1.18345 0.90091 0.91229 0.89667 1.19913 1.02877 0.97596 1.24063 0.90164 1.26954 0.98547 0.97697 0.95052 1.69639 1.24508 1.15728 1.31958 0.85137 0.77286 0.78226 0.78814 1.17402 1.17950 1.19815 1.22004 0.90929 1.02121 1.04854 0.91541 0.87714 0.91725 0.90002 0.87897 0.91021 0.82555 0.80278 0.74176 0.80402 0.84596 0.88817 0.80826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.47 127.77 1.34 2.35 16 2 N -0.61 -10.65 3.27 -875.00 -2.86 -13.51 16 3 C 0.06 0.70 8.88 127.77 1.14 1.83 16 4 C 0.56 14.09 7.41 86.88 0.64 14.73 16 5 O -0.57 -17.79 16.49 -3.74 -0.06 -17.85 16 6 C -0.06 -1.70 5.27 -19.90 -0.10 -1.80 16 7 C -0.16 -4.27 9.75 22.64 0.22 -4.05 16 8 C 0.13 3.88 11.17 84.63 0.94 4.82 16 9 N -0.51 -20.28 7.85 -193.25 -1.52 -21.80 16 10 C 0.35 12.61 7.42 132.99 0.99 13.59 16 11 N -0.66 -25.07 5.37 -312.54 -1.68 -26.75 16 12 C 0.58 28.47 7.72 86.30 0.67 29.13 16 13 O -0.53 -30.28 12.79 -4.57 -0.06 -30.33 16 14 C -0.46 -22.64 6.50 24.66 0.16 -22.48 16 15 S 0.02 0.71 22.26 -56.49 -1.26 -0.55 16 16 C -0.19 -7.29 11.07 66.64 0.74 -6.55 16 17 C -0.13 -5.94 9.01 22.61 0.20 -5.74 16 18 C 0.12 6.25 5.62 -20.89 -0.12 6.14 16 19 C -0.41 -22.84 8.38 23.33 0.20 -22.65 16 20 H 0.08 4.79 6.25 -2.91 -0.02 4.77 16 21 C 0.04 1.84 5.41 85.38 0.46 2.30 16 22 N -0.79 -38.08 11.03 21.89 0.24 -37.84 16 23 Si 0.99 38.49 29.57 68.60 2.03 40.52 16 24 H -0.25 -9.11 7.11 99.48 0.71 -8.40 16 25 H -0.26 -9.12 7.11 99.48 0.71 -8.41 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 27 C -0.18 -4.55 7.45 22.78 0.17 -4.38 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.67 8.07 -2.39 -0.02 0.65 16 30 H 0.06 1.05 7.36 -2.39 -0.02 1.03 16 31 H 0.08 0.73 7.12 -2.39 -0.02 0.71 16 32 H 0.10 0.71 8.06 -2.39 -0.02 0.69 16 33 H 0.07 1.10 5.57 -2.39 -0.01 1.09 16 34 H 0.16 3.54 8.06 -2.91 -0.02 3.51 16 35 H 0.18 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.42 13.00 7.79 -92.71 -0.72 12.27 16 37 H 0.18 5.44 8.06 -2.91 -0.02 5.41 16 38 H 0.14 6.38 6.69 -2.91 -0.02 6.36 16 39 H 0.30 12.72 8.29 -92.70 -0.77 11.95 16 40 H 0.17 3.22 5.44 -2.91 -0.02 3.21 16 Total: -1.00 -74.42 354.43 2.87 -71.55 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: 0.40 Total: 29.32 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 7.64 Total: 7.25 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -5.82 Total: -99.90 kcal Atomic # 8 Polarization: -48.07 SS G_CDS: -0.12 Total: -48.19 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: 0.71 SS G_CDS: -1.26 Total: -0.55 kcal Total: -74.42 2.87 -71.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001420898299.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.770 kcal (2) G-P(sol) polarization free energy of solvation -74.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds