Wall clock time and date at job start Wed Apr 1 2020 03:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76196 * 99.99981 * 2 1 4 4 N 1.32484 * 119.16120 * 179.97438 * 3 2 1 5 5 C 1.32290 * 120.79014 * 179.97438 * 4 3 2 6 6 C 1.39021 * 119.13973 * 0.02562 * 5 4 3 7 7 O 1.36028 * 120.77112 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00576 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47515 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99788 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00132 * 180.02562 * 9 8 7 12 12 C 1.39237 * 120.00231 * 185.18464 * 11 9 8 13 13 C 1.39486 * 119.82855 * 324.05356 * 12 11 9 14 14 C 1.36370 * 120.16515 * 180.29933 * 13 12 11 15 15 C 1.40876 * 119.82773 * 359.48291 * 14 13 12 16 16 C 1.41160 * 120.16091 * 180.25102 * 15 14 13 17 17 H 1.07993 * 119.99606 * 205.02487 * 16 15 14 18 18 C 1.39904 * 120.00083 * 25.02497 * 16 15 14 19 19 N 1.30878 * 119.99809 * 17.77995 * 18 16 15 20 20 Si 1.86793 * 119.99913 * 197.77575 * 18 16 15 21 21 H 1.48500 * 109.47584 * 94.98593 * 20 18 16 22 22 H 1.48510 * 109.47244 * 214.98294 * 20 18 16 23 23 H 1.48498 * 109.47304 * 334.98123 * 20 18 16 24 24 C 1.40865 * 119.67384 * 0.51475 * 15 14 13 25 25 C 1.36379 * 119.82607 * 359.73526 * 24 15 14 26 26 C 1.39028 * 118.46326 * 0.25492 * 6 5 4 27 27 N 1.32283 * 119.13937 * 359.48455 * 26 6 5 28 28 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46966 * 299.99756 * 1 2 3 30 30 H 1.09003 * 109.47210 * 59.99629 * 1 2 3 31 31 H 1.08005 * 120.42551 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.46857 * 60.00062 * 8 7 6 33 33 H 1.09004 * 109.47037 * 300.01020 * 8 7 6 34 34 H 0.97007 * 119.99967 * 5.17437 * 11 9 8 35 35 H 1.07998 * 119.91418 * 0.02562 * 13 12 11 36 36 H 1.08005 * 120.08508 * 179.69974 * 14 13 12 37 37 H 0.97000 * 119.99698 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.08712 * 179.71205 * 24 15 14 39 39 H 1.07999 * 119.91122 * 179.97438 * 25 24 15 40 40 H 1.07996 * 120.43139 * 179.72619 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3674 2.1700 0.0005 5 6 3.6341 3.4658 0.0000 6 6 2.5812 4.3736 -0.0005 7 8 2.8174 5.7132 -0.0005 8 6 1.6762 6.5733 -0.0005 9 6 2.1300 8.0103 -0.0011 10 8 3.3142 8.2722 -0.0011 11 7 1.2200 9.0044 -0.0007 12 6 1.6356 10.3288 -0.1102 13 6 2.8232 10.7358 0.4977 14 6 3.2336 12.0326 0.4000 15 6 2.4604 12.9595 -0.3265 16 6 2.8813 14.3023 -0.4366 17 1 2.1565 15.0823 -0.6171 18 6 4.2375 14.6228 -0.3121 19 7 5.1452 13.6889 -0.4423 20 14 4.7526 16.3834 0.0400 21 1 4.9403 16.5614 1.5023 22 1 6.0283 16.6758 -0.6620 23 1 3.6989 17.3130 -0.4406 24 6 1.2623 12.5408 -0.9377 25 6 0.8621 11.2418 -0.8268 26 6 1.2813 3.8806 0.0049 27 7 1.0887 2.5719 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.6565 3.8138 0.0009 32 1 1.0768 6.3816 0.8895 33 1 1.0766 6.3815 -0.8904 34 1 0.2754 8.7973 0.0758 35 1 3.4168 10.0232 1.0510 36 1 4.1509 12.3475 0.8753 37 1 6.0854 13.9112 -0.3563 38 1 0.6620 13.2468 -1.4922 39 1 -0.0564 10.9194 -1.2945 40 1 0.4397 4.5574 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001421411129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:45 Heat of formation + Delta-G solvation = 6.771967 kcal Electronic energy + Delta-G solvation = -25433.228353 eV Core-core repulsion = 21533.073387 eV Total energy + Delta-G solvation = -3900.154965 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55577 -39.96666 -38.62051 -37.17674 -34.58462 -34.25681 -33.09843 -31.61232 -29.91657 -29.50119 -29.26072 -28.23045 -25.30650 -24.85608 -24.16334 -21.65582 -21.18081 -19.86069 -19.00871 -18.55298 -18.39686 -17.39337 -16.97605 -16.78003 -16.05990 -15.69043 -15.42310 -15.22637 -14.77726 -14.43738 -14.28832 -14.09219 -13.93722 -13.72183 -13.15258 -13.01881 -12.94484 -12.73651 -12.16839 -12.02374 -11.94444 -11.84443 -11.54088 -11.35089 -11.18618 -10.99942 -10.96575 -10.58420 -10.03690 -9.98129 -9.71760 -9.70807 -9.55102 -9.21001 -8.78139 -7.95521 -7.60684 -7.13160 -6.81269 -4.37029 0.42444 0.55553 0.88375 1.76644 2.30367 2.44823 2.87982 3.02300 3.05127 3.08155 3.20403 3.23365 3.66370 3.73348 3.86997 3.88585 4.20113 4.43087 4.55167 4.61344 4.74249 4.76271 4.80714 4.83985 5.29522 5.40752 5.49331 5.63054 6.05413 6.28159 6.32129 6.64163 6.70077 6.89383 6.96697 7.07927 7.19791 7.40507 7.51409 7.56829 7.85331 7.98668 8.07540 8.21401 8.53871 8.59173 8.81250 8.91433 10.11957 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.001653 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.150375 B =16939.277161 C =17618.052427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 S -0.001 6.001 3 C 0.250 3.750 4 N -0.462 5.462 5 C 0.145 3.855 6 C 0.029 3.971 7 O -0.269 6.269 8 C 0.037 3.963 9 C 0.498 3.502 10 O -0.502 6.502 11 N -0.643 5.643 12 C -0.017 4.017 13 C -0.083 4.083 14 C -0.159 4.159 15 C 0.108 3.892 16 C -0.457 4.457 17 H 0.080 0.920 18 C 0.074 3.926 19 N -0.784 5.784 20 Si 0.910 3.090 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.217 4.217 25 C -0.099 4.099 26 C 0.077 3.923 27 N -0.489 5.489 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.186 0.814 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.396 0.604 35 H 0.106 0.894 36 H 0.120 0.880 37 H 0.283 0.717 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.600 -20.919 1.682 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.231 5.769 3 C -0.125 4.125 4 N -0.178 5.178 5 C -0.026 4.026 6 C -0.025 4.025 7 O -0.178 6.178 8 C -0.042 4.042 9 C 0.282 3.718 10 O -0.376 6.376 11 N -0.288 5.288 12 C -0.108 4.108 13 C -0.103 4.103 14 C -0.179 4.179 15 C 0.105 3.895 16 C -0.486 4.486 17 H 0.098 0.902 18 C -0.145 4.145 19 N -0.409 5.409 20 Si 0.734 3.266 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.185 1.185 24 C -0.237 4.237 25 C -0.119 4.119 26 C -0.093 4.093 27 N -0.207 5.207 28 H 0.124 0.876 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.203 0.797 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.229 0.771 35 H 0.124 0.876 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -7.741 -22.653 1.646 23.995 hybrid contribution -1.144 2.737 0.043 2.967 sum -8.885 -19.915 1.689 21.873 Atomic orbital electron populations 1.23555 0.94223 1.06349 1.07157 1.85822 1.06699 0.93073 1.91301 1.24787 0.87118 1.00741 0.99823 1.68582 1.21082 1.15094 1.13041 1.22852 0.99815 0.86014 0.93928 1.20855 0.96148 0.85665 0.99845 1.86284 1.32413 1.11461 1.87623 1.22667 0.88207 0.89659 1.03698 1.19769 0.87178 0.85568 0.79270 1.90782 1.16374 1.83417 1.47018 1.42700 1.08837 1.05135 1.72143 1.17104 1.00843 0.81635 1.11258 1.20543 0.94960 0.96117 0.98672 1.20999 1.01971 0.92297 1.02597 1.17701 0.90369 0.93341 0.88058 1.19598 0.92628 0.93567 1.42844 0.90230 1.25969 0.96631 0.99603 0.92300 1.69862 1.02457 1.35059 1.33519 0.86273 0.78689 0.82170 0.79462 1.19267 1.20219 1.18517 1.20546 1.01214 0.94607 1.07347 1.20044 0.98640 0.94127 0.99054 1.23379 0.95627 0.92443 0.97807 1.68588 1.34540 1.03380 1.14204 0.87600 0.89154 0.89154 0.79742 0.88926 0.88790 0.77097 0.87569 0.86236 0.90635 0.88538 0.89138 0.80777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.62 101.05 0.97 0.13 16 2 S 0.00 -0.01 22.89 -107.50 -2.46 -2.47 16 3 C 0.25 2.85 7.85 -90.95 -0.71 2.14 16 4 N -0.46 -5.61 10.39 -13.36 -0.14 -5.74 16 5 C 0.15 1.61 11.26 -17.06 -0.19 1.42 16 6 C 0.03 0.32 6.73 -39.00 -0.26 0.05 16 7 O -0.27 -3.40 9.69 -39.74 -0.39 -3.79 16 8 C 0.04 0.38 5.25 36.00 0.19 0.57 16 9 C 0.50 8.03 7.74 -10.99 -0.09 7.95 16 10 O -0.50 -10.85 13.93 -14.35 -0.20 -11.05 16 11 N -0.64 -10.13 5.30 -9.74 -0.05 -10.18 16 12 C -0.02 -0.35 6.30 -83.57 -0.53 -0.88 16 13 C -0.08 -2.01 8.62 -39.79 -0.34 -2.35 16 14 C -0.16 -4.16 8.63 -39.26 -0.34 -4.50 16 15 C 0.11 2.82 5.57 -106.80 -0.59 2.23 16 16 C -0.46 -11.86 9.03 -37.85 -0.34 -12.20 16 17 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 18 C 0.07 1.83 5.13 -17.33 -0.09 1.74 16 19 N -0.78 -20.36 10.98 55.55 0.61 -19.75 16 20 Si 0.91 18.35 29.59 -169.99 -5.03 13.32 16 21 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 22 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 24 C -0.22 -5.08 9.74 -39.26 -0.38 -5.46 16 25 C -0.10 -2.05 9.90 -39.79 -0.39 -2.45 16 26 C 0.08 0.72 10.30 -17.06 -0.18 0.55 16 27 N -0.49 -5.17 9.12 -13.37 -0.12 -5.29 16 28 H 0.11 0.38 8.14 -51.91 -0.42 -0.04 16 29 H 0.09 0.55 8.11 -51.92 -0.42 0.13 16 30 H 0.09 0.55 8.11 -51.91 -0.42 0.13 16 31 H 0.19 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.09 0.65 7.70 -51.93 -0.40 0.25 16 33 H 0.09 0.69 7.72 -51.93 -0.40 0.29 16 34 H 0.40 4.37 8.82 -40.82 -0.36 4.01 16 35 H 0.11 2.59 6.24 -52.49 -0.33 2.26 16 36 H 0.12 3.26 6.19 -52.48 -0.32 2.94 16 37 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 38 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 39 H 0.09 1.56 8.06 -52.49 -0.42 1.13 16 40 H 0.18 1.05 6.45 -52.49 -0.34 0.72 16 LS Contribution 362.76 15.07 5.47 5.47 Total: -1.00 -32.89 362.76 -9.83 -42.71 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.23 Total: 7.83 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -3.28 Total: -11.06 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.30 Total: -40.97 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.59 Total: -14.84 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -5.03 Total: 13.32 kcal Atomic # 16 Polarization: -0.01 SS G_CDS: -2.46 Total: -2.47 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.89 -9.83 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421411129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.483 kcal (2) G-P(sol) polarization free energy of solvation -32.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds