Wall clock time and date at job start Wed Apr 1 2020 03:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81005 * 1 3 3 C 1.76196 * 99.99981 * 2 1 4 4 N 1.32484 * 119.16120 * 179.97438 * 3 2 1 5 5 C 1.32290 * 120.79014 * 179.97438 * 4 3 2 6 6 C 1.39021 * 119.13973 * 0.02562 * 5 4 3 7 7 O 1.36028 * 120.77112 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00576 * 180.02562 * 7 6 5 9 9 C 1.50699 * 109.47515 * 180.02562 * 8 7 6 10 10 O 1.21277 * 119.99788 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00132 * 180.02562 * 9 8 7 12 12 C 1.39237 * 120.00231 * 185.18464 * 11 9 8 13 13 C 1.39486 * 119.82855 * 324.05356 * 12 11 9 14 14 C 1.36370 * 120.16515 * 180.29933 * 13 12 11 15 15 C 1.40876 * 119.82773 * 359.48291 * 14 13 12 16 16 C 1.41160 * 120.16091 * 180.25102 * 15 14 13 17 17 H 1.07993 * 119.99606 * 205.02487 * 16 15 14 18 18 C 1.39904 * 120.00083 * 25.02497 * 16 15 14 19 19 N 1.30878 * 119.99809 * 17.77995 * 18 16 15 20 20 Si 1.86793 * 119.99913 * 197.77575 * 18 16 15 21 21 H 1.48500 * 109.47584 * 94.98593 * 20 18 16 22 22 H 1.48510 * 109.47244 * 214.98294 * 20 18 16 23 23 H 1.48498 * 109.47304 * 334.98123 * 20 18 16 24 24 C 1.40865 * 119.67384 * 0.51475 * 15 14 13 25 25 C 1.36379 * 119.82607 * 359.73526 * 24 15 14 26 26 C 1.39028 * 118.46326 * 0.25492 * 6 5 4 27 27 N 1.32283 * 119.13937 * 359.48455 * 26 6 5 28 28 H 1.09005 * 109.46930 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.46966 * 299.99756 * 1 2 3 30 30 H 1.09003 * 109.47210 * 59.99629 * 1 2 3 31 31 H 1.08005 * 120.42551 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.46857 * 60.00062 * 8 7 6 33 33 H 1.09004 * 109.47037 * 300.01020 * 8 7 6 34 34 H 0.97007 * 119.99967 * 5.17437 * 11 9 8 35 35 H 1.07998 * 119.91418 * 0.02562 * 13 12 11 36 36 H 1.08005 * 120.08508 * 179.69974 * 14 13 12 37 37 H 0.97000 * 119.99698 * 179.97438 * 19 18 16 38 38 H 1.07998 * 120.08712 * 179.71205 * 24 15 14 39 39 H 1.07999 * 119.91122 * 179.97438 * 25 24 15 40 40 H 1.07996 * 120.43139 * 179.72619 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8101 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 7 3.3674 2.1700 0.0005 5 6 3.6341 3.4658 0.0000 6 6 2.5812 4.3736 -0.0005 7 8 2.8174 5.7132 -0.0005 8 6 1.6762 6.5733 -0.0005 9 6 2.1300 8.0103 -0.0011 10 8 3.3142 8.2722 -0.0011 11 7 1.2200 9.0044 -0.0007 12 6 1.6356 10.3288 -0.1102 13 6 2.8232 10.7358 0.4977 14 6 3.2336 12.0326 0.4000 15 6 2.4604 12.9595 -0.3265 16 6 2.8813 14.3023 -0.4366 17 1 2.1565 15.0823 -0.6171 18 6 4.2375 14.6228 -0.3121 19 7 5.1452 13.6889 -0.4423 20 14 4.7526 16.3834 0.0400 21 1 4.9403 16.5614 1.5023 22 1 6.0283 16.6758 -0.6620 23 1 3.6989 17.3130 -0.4406 24 6 1.2623 12.5408 -0.9377 25 6 0.8621 11.2418 -0.8268 26 6 1.2813 3.8806 0.0049 27 7 1.0887 2.5719 0.0000 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 4.6565 3.8138 0.0009 32 1 1.0768 6.3816 0.8895 33 1 1.0766 6.3815 -0.8904 34 1 0.2754 8.7973 0.0758 35 1 3.4168 10.0232 1.0510 36 1 4.1509 12.3475 0.8753 37 1 6.0854 13.9112 -0.3563 38 1 0.6620 13.2468 -1.4922 39 1 -0.0564 10.9194 -1.2945 40 1 0.4397 4.5574 0.0092 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001421411129.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:44 Heat of formation + Delta-G solvation = -14.329831 kcal Electronic energy + Delta-G solvation = -25434.143395 eV Core-core repulsion = 21533.073387 eV Total energy + Delta-G solvation = -3901.070008 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.35287 -41.27916 -39.72741 -38.78317 -36.23092 -35.03448 -34.79402 -32.45349 -31.50365 -31.16910 -29.91294 -29.37241 -26.75068 -25.80454 -25.11482 -23.31270 -22.87220 -21.32922 -19.75843 -19.47867 -19.31356 -19.22512 -18.27360 -17.65147 -17.46115 -17.03108 -16.38889 -16.30340 -15.82736 -15.69669 -15.46841 -15.17984 -14.97842 -14.78442 -14.48613 -14.24020 -13.97752 -13.83520 -13.71293 -13.46594 -13.37731 -12.84189 -12.75598 -12.74335 -12.60543 -12.32948 -12.14728 -11.75253 -11.71516 -11.59431 -11.24973 -10.83835 -10.50223 -10.46930 -10.45563 -9.46063 -8.91675 -8.65642 -8.63690 -6.28945 -0.36672 -0.20045 0.19617 0.78141 1.14228 1.21997 1.37021 1.39541 1.41798 1.52299 1.72256 2.19707 2.42580 2.57740 2.74876 3.03048 3.10820 3.48683 3.56239 3.72862 3.84152 3.96523 4.05873 4.36899 4.39489 4.44566 4.48229 4.56469 4.73960 4.97472 4.98599 5.09444 5.16923 5.28832 5.40938 5.51472 5.67776 5.83161 5.94930 6.06913 6.09498 6.33362 6.62685 6.65928 6.68452 6.91374 6.99681 7.35187 8.31513 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.035518 B = 0.001653 C = 0.001589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.150375 B =16939.277161 C =17618.052427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 S -0.018 6.018 3 C 0.236 3.764 4 N -0.486 5.486 5 C 0.130 3.870 6 C 0.023 3.977 7 O -0.298 6.298 8 C 0.044 3.956 9 C 0.495 3.505 10 O -0.565 6.565 11 N -0.631 5.631 12 C 0.003 3.997 13 C -0.100 4.100 14 C -0.185 4.185 15 C 0.074 3.926 16 C -0.494 4.494 17 H 0.083 0.917 18 C 0.030 3.970 19 N -0.828 5.828 20 Si 0.985 3.015 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.252 1.252 24 C -0.225 4.225 25 C -0.092 4.092 26 C 0.088 3.912 27 N -0.493 5.493 28 H 0.131 0.869 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.190 0.810 32 H 0.138 0.862 33 H 0.137 0.863 34 H 0.425 0.575 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.287 0.713 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.016 -22.182 1.302 25.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 S 0.214 5.786 3 C -0.138 4.138 4 N -0.203 5.203 5 C -0.040 4.040 6 C -0.031 4.031 7 O -0.208 6.208 8 C -0.033 4.033 9 C 0.282 3.718 10 O -0.443 6.443 11 N -0.279 5.279 12 C -0.091 4.091 13 C -0.120 4.120 14 C -0.205 4.205 15 C 0.071 3.929 16 C -0.523 4.523 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.454 5.454 20 Si 0.805 3.195 21 H -0.189 1.189 22 H -0.196 1.196 23 H -0.175 1.175 24 C -0.245 4.245 25 C -0.112 4.112 26 C -0.081 4.081 27 N -0.211 5.211 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.207 0.793 32 H 0.156 0.844 33 H 0.155 0.845 34 H 0.263 0.737 35 H 0.113 0.887 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.129 0.871 39 H 0.158 0.842 40 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -11.218 -23.960 1.268 26.487 hybrid contribution -0.207 2.885 0.158 2.896 sum -11.426 -21.075 1.426 24.015 Atomic orbital electron populations 1.23633 0.91370 1.08013 1.07161 1.85878 1.09841 0.92002 1.90852 1.25205 0.87188 1.01900 0.99548 1.68609 1.21837 1.15577 1.14267 1.23040 1.00677 0.86169 0.94085 1.20794 0.96772 0.84763 1.00739 1.86233 1.33989 1.12365 1.88230 1.22763 0.87748 0.84974 1.07844 1.20828 0.86161 0.87957 0.76861 1.90776 1.19293 1.84779 1.49489 1.42545 1.10583 1.03035 1.71712 1.17167 0.99044 0.84246 1.08619 1.20599 0.96617 0.95167 0.99624 1.20888 1.01891 0.93622 1.04121 1.18043 0.91900 0.93808 0.89142 1.19866 0.93565 0.93910 1.44961 0.89888 1.26871 0.96232 1.03995 0.91381 1.69948 1.02903 1.37410 1.35126 0.85151 0.78452 0.76613 0.79248 1.18876 1.19571 1.17542 1.20842 1.00384 0.96303 1.06943 1.20439 0.99952 0.92827 0.97986 1.23995 0.96017 0.92533 0.95581 1.68686 1.34002 1.03802 1.14579 0.85079 0.89049 0.89076 0.79265 0.84417 0.84534 0.73674 0.88712 0.88884 0.90271 0.87088 0.84179 0.76809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.23 9.62 113.37 1.09 -0.14 16 2 S -0.02 -0.29 22.89 -56.49 -1.29 -1.59 16 3 C 0.24 5.07 7.85 180.46 1.42 6.49 16 4 N -0.49 -11.64 10.39 -196.19 -2.04 -13.67 16 5 C 0.13 2.84 11.26 84.81 0.96 3.80 16 6 C 0.02 0.45 6.73 22.65 0.15 0.61 16 7 O -0.30 -6.90 9.69 -74.84 -0.73 -7.62 16 8 C 0.04 0.72 5.25 71.24 0.37 1.10 16 9 C 0.49 14.80 7.74 87.66 0.68 15.48 16 10 O -0.57 -24.62 13.93 16.02 0.22 -24.40 16 11 N -0.63 -17.77 5.30 -303.12 -1.61 -19.38 16 12 C 0.00 0.10 6.30 38.56 0.24 0.34 16 13 C -0.10 -4.99 8.62 22.13 0.19 -4.80 16 14 C -0.19 -10.23 8.63 22.48 0.19 -10.04 16 15 C 0.07 3.98 5.57 -21.27 -0.12 3.86 16 16 C -0.49 -26.56 9.03 23.39 0.21 -26.35 16 17 H 0.08 4.21 7.91 -2.91 -0.02 4.19 16 18 C 0.03 1.54 5.13 85.24 0.44 1.97 16 19 N -0.83 -45.37 10.98 21.82 0.24 -45.13 16 20 Si 0.98 38.66 29.59 68.60 2.03 40.69 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 24 C -0.22 -10.38 9.74 22.48 0.22 -10.16 16 25 C -0.09 -3.60 9.90 22.13 0.22 -3.38 16 26 C 0.09 1.34 10.30 84.81 0.87 2.21 16 27 N -0.49 -9.08 9.12 -196.20 -1.79 -10.87 16 28 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.09 0.86 8.11 -2.40 -0.02 0.85 16 30 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 31 H 0.19 3.62 8.06 -2.91 -0.02 3.59 16 32 H 0.14 1.08 7.70 -2.39 -0.02 1.06 16 33 H 0.14 1.14 7.72 -2.38 -0.02 1.13 16 34 H 0.42 7.11 8.82 -92.70 -0.82 6.29 16 35 H 0.09 4.87 6.24 -2.91 -0.02 4.85 16 36 H 0.09 5.51 6.19 -2.91 -0.02 5.49 16 37 H 0.29 14.31 8.30 -92.71 -0.77 13.54 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.14 4.07 8.06 -2.91 -0.02 4.04 16 40 H 0.22 1.27 6.45 -2.91 -0.02 1.25 16 Total: -1.00 -78.72 362.76 2.47 -76.25 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.29 Total: 24.71 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 7.14 Total: -18.99 kcal Atomic # 7 Polarization: -83.86 SS G_CDS: -5.20 Total: -89.05 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.50 Total: -32.02 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: -0.29 SS G_CDS: -1.29 Total: -1.59 kcal Total: -78.72 2.47 -76.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001421411129.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.923 kcal (2) G-P(sol) polarization free energy of solvation -78.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds