Wall clock time and date at job start Wed Apr 1 2020 02:50:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 120.00014 * 2 1 4 4 N 1.34773 * 120.00524 * 180.02562 * 2 1 3 5 5 C 1.39406 * 120.00127 * 184.80844 * 4 2 1 6 6 C 1.39040 * 119.69449 * 185.43782 * 5 4 2 7 7 C 1.38365 * 119.09868 * 179.97438 * 6 5 4 8 8 C 1.38833 * 118.49582 * 0.02562 * 7 6 5 9 9 C 1.50705 * 120.34523 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46806 * 89.99955 * 9 8 7 11 11 C 1.34781 * 119.99687 * 179.97438 * 10 9 8 12 12 O 1.21761 * 119.99625 * 0.02562 * 11 10 9 13 13 C 1.46239 * 119.99853 * 180.02562 * 11 10 9 14 14 S 1.75666 * 125.22822 * 0.15181 * 13 11 10 15 15 C 1.75470 * 92.08656 * 180.21002 * 14 13 11 16 16 C 1.32763 * 111.36918 * 359.80157 * 15 14 13 17 17 C 1.39548 * 125.22373 * 180.02562 * 13 11 10 18 18 C 1.40538 * 123.71564 * 359.97438 * 17 13 11 19 19 H 1.07999 * 119.99824 * 354.37860 * 18 17 13 20 20 C 1.40310 * 119.99984 * 174.38496 * 18 17 13 21 21 N 1.30638 * 120.00078 * 213.21328 * 20 18 17 22 22 Si 1.86806 * 119.99984 * 33.20452 * 20 18 17 23 23 H 1.48498 * 109.47048 * 264.41802 * 22 20 18 24 24 H 1.48502 * 109.46986 * 24.41770 * 22 20 18 25 25 H 1.48502 * 109.46811 * 144.41575 * 22 20 18 26 26 C 1.38074 * 119.31044 * 0.25078 * 8 7 6 27 27 N 1.31936 * 120.84998 * 359.50166 * 26 8 7 28 28 H 1.09000 * 109.46537 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46967 * 299.98967 * 1 2 3 30 30 H 1.08990 * 109.47731 * 59.99554 * 1 2 3 31 31 H 0.97001 * 119.99938 * 4.79775 * 4 2 1 32 32 H 1.07998 * 120.44804 * 0.02562 * 6 5 4 33 33 H 1.08000 * 120.74677 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46733 * 330.00280 * 9 8 7 35 35 H 1.08995 * 109.47082 * 210.00189 * 9 8 7 36 36 H 0.96999 * 120.00413 * 0.02562 * 10 9 8 37 37 H 1.08007 * 124.31522 * 179.82662 * 15 14 13 38 38 H 1.07999 * 122.78823 * 179.97438 * 16 15 14 39 39 H 0.97000 * 119.99751 * 354.97909 * 21 20 18 40 40 H 1.07999 * 119.57438 * 179.74321 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 -0.0005 5 6 3.5713 -1.1692 0.1007 6 6 4.2685 -2.3667 -0.0143 7 6 5.6483 -2.3544 0.0876 8 6 6.2859 -1.1399 0.3023 9 6 7.7870 -1.0785 0.4204 10 7 8.3730 -0.8695 -0.9059 11 6 9.7107 -0.7813 -1.0453 12 8 10.4320 -0.8757 -0.0690 13 6 10.2956 -0.5721 -2.3692 14 16 9.3876 -0.4135 -3.8647 15 6 10.8535 -0.2189 -4.8092 16 6 11.9346 -0.2678 -4.0401 17 6 11.6607 -0.4655 -2.6383 18 6 12.6589 -0.5469 -1.6523 19 1 12.3841 -0.6090 -0.6097 20 6 14.0122 -0.5473 -2.0225 21 7 14.8803 -1.2290 -1.3237 22 14 14.5728 0.4267 -3.5147 23 1 14.6277 -0.4687 -4.6981 24 1 13.6143 1.5310 -3.7736 25 1 15.9219 0.9920 -3.2586 26 6 5.5299 0.0102 0.4124 27 7 4.2154 -0.0315 0.3063 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8898 31 1 1.6986 -2.0057 -0.0712 32 1 3.7402 -3.2936 -0.1817 33 1 6.2165 -3.2689 0.0019 34 1 8.1572 -2.0149 0.8378 35 1 8.0665 -0.2532 1.0753 36 1 7.7983 -0.7940 -1.6837 37 1 10.8738 -0.0771 -5.8797 38 1 12.9361 -0.1685 -4.4319 39 1 14.6033 -1.6752 -0.5081 40 1 6.0211 0.9566 0.5836 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433464437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:51 Heat of formation + Delta-G solvation = -0.235717 kcal Electronic energy + Delta-G solvation = -25899.123621 eV Core-core repulsion = 21998.664780 eV Total energy + Delta-G solvation = -3900.458841 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.99711 -39.34437 -38.23612 -36.35372 -35.40203 -33.95999 -33.48764 -32.37420 -31.22523 -29.75054 -29.00198 -26.83541 -25.16332 -24.17789 -22.32755 -21.69666 -20.82434 -20.49080 -19.23533 -18.45514 -18.03548 -17.34993 -16.44115 -15.98578 -15.75577 -15.51659 -15.15755 -14.89683 -14.75983 -14.22738 -14.01279 -13.98098 -13.77762 -13.34137 -13.22394 -13.10976 -13.00369 -12.57674 -12.33197 -12.21261 -11.91962 -11.77651 -11.57321 -11.21540 -10.93877 -10.81608 -10.44611 -10.36986 -9.98027 -9.95141 -9.45176 -9.24609 -9.22328 -8.60112 -8.29276 -8.24071 -7.72923 -7.69036 -7.43764 -4.62846 0.87070 1.18323 1.99374 2.38224 2.57237 2.85260 2.88185 3.08082 3.28121 3.53974 3.61098 3.68262 3.71698 4.11432 4.33291 4.35291 4.52322 4.68104 4.70829 4.84485 4.91612 4.95790 4.98209 5.07425 5.34665 5.41378 5.73973 5.75862 5.79658 5.90657 5.99948 6.06583 6.29343 6.57733 6.68054 6.87477 6.88515 7.12206 7.17825 7.29820 7.46461 7.73737 8.05821 8.08370 8.35204 8.45622 8.74355 9.55462 9.58127 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.002239 C = 0.002131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.642301 B =12500.496279 C =13133.428241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.498 3.502 3 O -0.477 6.477 4 N -0.664 5.664 5 C 0.354 3.646 6 C -0.208 4.208 7 C -0.031 4.031 8 C -0.177 4.177 9 C 0.177 3.823 10 N -0.749 5.749 11 C 0.601 3.399 12 O -0.569 6.569 13 C -0.451 4.451 14 S -0.028 6.028 15 C -0.170 4.170 16 C -0.168 4.168 17 C 0.110 3.890 18 C -0.424 4.424 19 H 0.122 0.878 20 C 0.037 3.963 21 N -0.756 5.756 22 Si 1.070 2.930 23 H -0.271 1.271 24 H -0.261 1.261 25 H -0.283 1.283 26 C 0.150 3.850 27 N -0.478 5.478 28 H 0.076 0.924 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.416 0.584 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.390 0.610 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.300 0.700 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.358 -3.451 0.073 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.284 3.716 3 O -0.345 6.345 4 N -0.312 5.312 5 C 0.123 3.877 6 C -0.231 4.231 7 C -0.057 4.057 8 C -0.180 4.180 9 C 0.052 3.948 10 N -0.402 5.402 11 C 0.399 3.601 12 O -0.454 6.454 13 C -0.570 4.570 14 S 0.228 5.772 15 C -0.305 4.305 16 C -0.201 4.201 17 C 0.100 3.900 18 C -0.453 4.453 19 H 0.139 0.861 20 C -0.191 4.191 21 N -0.375 5.375 22 Si 0.897 3.103 23 H -0.198 1.198 24 H -0.186 1.186 25 H -0.210 1.210 26 C -0.008 4.008 27 N -0.192 5.192 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.253 0.747 32 H 0.153 0.847 33 H 0.158 0.842 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.223 0.777 37 H 0.162 0.838 38 H 0.135 0.865 39 H 0.112 0.888 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -21.180 -1.674 -0.291 21.248 hybrid contribution 0.044 -1.762 0.698 1.896 sum -21.136 -3.437 0.407 21.417 Atomic orbital electron populations 1.21864 0.90838 1.04371 1.05709 1.21097 0.90655 0.83433 0.76393 1.90864 1.69927 1.30383 1.43368 1.43776 1.04115 1.10704 1.72570 1.18515 0.84612 0.90146 0.94448 1.21433 0.95074 0.97569 1.09042 1.21356 0.93323 0.98248 0.92790 1.21001 0.97384 0.94406 1.05241 1.19801 0.85952 1.02188 0.86831 1.45884 1.07325 1.79083 1.07939 1.16764 0.79984 0.75632 0.87702 1.90628 1.59932 1.54681 1.40118 1.22054 0.94487 1.47848 0.92583 1.82792 1.10627 1.82008 1.01749 1.24928 0.96314 1.07579 1.01655 1.21465 0.97844 1.06160 0.94638 1.17776 0.91598 0.90426 0.90178 1.21277 0.90773 1.34825 0.98468 0.86085 1.27767 0.93619 0.93763 1.03980 1.70464 1.39717 1.15046 1.12305 0.83758 0.75968 0.77327 0.73258 1.19793 1.18558 1.21038 1.22668 0.87817 0.98185 0.92163 1.67662 1.10085 1.26503 1.14933 0.90481 0.88375 0.88410 0.74715 0.84661 0.84169 0.91385 0.91213 0.77735 0.83823 0.86464 0.88790 0.82165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.77 10.39 36.00 0.37 -0.40 16 2 C 0.50 4.95 7.89 -10.99 -0.09 4.86 16 3 O -0.48 -7.36 15.40 5.56 0.09 -7.28 16 4 N -0.66 -5.60 5.39 -11.43 -0.06 -5.66 16 5 C 0.35 4.19 7.41 -154.71 -1.15 3.04 16 6 C -0.21 -2.03 9.94 -39.24 -0.39 -2.42 16 7 C -0.03 -0.34 9.85 -39.31 -0.39 -0.73 16 8 C -0.18 -2.36 5.27 -104.46 -0.55 -2.91 16 9 C 0.18 2.83 5.82 -5.19 -0.03 2.80 16 10 N -0.75 -14.43 5.54 -62.93 -0.35 -14.78 16 11 C 0.60 14.68 7.76 -13.04 -0.10 14.58 16 12 O -0.57 -15.68 14.29 5.13 0.07 -15.60 16 13 C -0.45 -11.28 6.51 -35.88 -0.23 -11.51 16 14 S -0.03 -0.58 22.25 -107.50 -2.39 -2.97 16 15 C -0.17 -3.47 11.07 28.86 0.32 -3.15 16 16 C -0.17 -3.84 8.16 -39.12 -0.32 -4.16 16 17 C 0.11 2.88 5.71 -106.21 -0.61 2.27 16 18 C -0.42 -11.56 9.03 -37.94 -0.34 -11.90 16 19 H 0.12 3.63 5.73 -52.49 -0.30 3.33 16 20 C 0.04 0.92 5.44 -17.28 -0.09 0.83 16 21 N -0.76 -19.13 13.64 55.57 0.76 -18.37 16 22 Si 1.07 22.10 24.83 -169.99 -4.22 17.88 16 23 H -0.27 -5.21 6.79 56.52 0.38 -4.83 16 24 H -0.26 -5.28 6.68 56.52 0.38 -4.90 16 25 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 26 C 0.15 2.11 10.85 -17.57 -0.19 1.92 16 27 N -0.48 -7.13 7.93 -12.37 -0.10 -7.22 16 28 H 0.08 0.12 7.92 -51.93 -0.41 -0.29 16 29 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.42 1.61 8.54 -40.82 -0.35 1.26 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 35 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 36 H 0.39 7.06 7.54 -40.82 -0.31 6.75 16 37 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 38 H 0.12 2.51 2.69 -52.49 -0.14 2.37 16 39 H 0.30 7.51 8.73 -40.82 -0.36 7.15 16 40 H 0.16 2.13 8.06 -52.49 -0.42 1.71 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -34.81 356.80 -8.69 -43.51 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: -4.08 Total: 12.00 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -3.79 Total: -6.87 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.25 Total: -46.04 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.16 Total: -22.88 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.22 Total: 17.88 kcal Atomic # 16 Polarization: -0.58 SS G_CDS: -2.39 Total: -2.97 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.81 -8.69 -43.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433464437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.270 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds