Wall clock time and date at job start Wed Apr 1 2020 02:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99864 * 2 1 4 4 C 1.50700 * 109.46857 * 180.02562 * 3 2 1 5 5 N 1.31806 * 119.08258 * 269.97532 * 4 3 2 6 6 C 1.32501 * 120.99257 * 179.68784 * 5 4 3 7 7 C 1.38203 * 119.18475 * 0.60930 * 6 5 4 8 8 C 1.39513 * 118.33676 * 359.42697 * 7 6 5 9 9 N 1.38952 * 120.52689 * 180.29449 * 8 7 6 10 10 C 1.34780 * 120.00195 * 174.94030 * 9 8 7 11 11 O 1.21538 * 120.00208 * 5.08974 * 10 9 8 12 12 C 1.47819 * 119.99632 * 185.09049 * 10 9 8 13 13 C 1.39693 * 120.10765 * 359.72539 * 12 10 9 14 14 C 1.38028 * 120.03568 * 179.74487 * 13 12 10 15 15 C 1.38186 * 120.24673 * 0.55589 * 14 13 12 16 16 C 1.39183 * 120.20765 * 359.69632 * 15 14 13 17 17 S 1.76199 * 120.02192 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99803 * 275.01137 * 17 16 15 19 19 H 1.08006 * 120.00043 * 354.99536 * 18 17 16 20 20 C 1.38728 * 119.99845 * 175.00041 * 18 17 16 21 21 N 1.31622 * 120.00295 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99737 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47310 * 59.99777 * 22 20 18 24 24 H 1.48505 * 109.47124 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47507 * 299.99722 * 22 20 18 26 26 C 1.38873 * 119.95598 * 0.02562 * 16 15 14 27 27 N 1.31732 * 119.08648 * 89.99858 * 4 3 2 28 28 H 1.08990 * 109.47166 * 300.00186 * 1 2 3 29 29 H 1.09001 * 109.46878 * 60.00571 * 1 2 3 30 30 H 1.08996 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47118 * 59.99764 * 3 2 1 32 32 H 1.09000 * 109.46738 * 299.99719 * 3 2 1 33 33 H 1.08003 * 120.40775 * 180.30920 * 6 5 4 34 34 H 1.08008 * 120.83114 * 179.69511 * 7 6 5 35 35 H 0.97009 * 119.99876 * 354.94357 * 9 8 7 36 36 H 1.07998 * 119.97978 * 0.02562 * 13 12 10 37 37 H 1.08000 * 119.88063 * 180.27268 * 14 13 12 38 38 H 1.08007 * 119.89675 * 179.72457 * 15 14 13 39 39 H 0.96995 * 120.00091 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.11875 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.1517 1.1362 1.1510 6 6 5.4714 1.0254 1.1946 7 6 6.1829 0.9750 0.0109 8 6 5.4752 1.0312 -1.1901 9 7 6.1442 0.9779 -2.4068 10 6 5.4458 0.9301 -3.5585 11 8 4.2344 1.0268 -3.5390 12 6 6.1531 0.7600 -4.8452 13 6 7.5458 0.6544 -4.8707 14 6 8.2044 0.4904 -6.0726 15 6 7.4920 0.4414 -7.2557 16 6 6.1045 0.5508 -7.2427 17 16 5.2010 0.4870 -8.7540 18 6 5.3077 2.1756 -9.2457 19 1 5.7665 2.9010 -8.5902 20 6 4.8021 2.5734 -10.4749 21 7 4.2433 1.6893 -11.2740 22 14 4.9146 4.3637 -10.9958 23 1 6.3403 4.7768 -11.0435 24 1 4.3072 4.5269 -12.3411 25 1 4.1864 5.2108 -10.0174 26 6 5.4327 0.7103 -6.0377 27 7 4.1505 1.1361 -1.1521 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.9851 0.9800 2.1435 34 1 7.2596 0.8899 0.0154 35 1 7.1141 0.9751 -2.4272 36 1 8.1071 0.6966 -3.9490 37 1 9.2808 0.4046 -6.0889 38 1 8.0134 0.3173 -8.1933 39 1 3.8895 1.9675 -12.1332 40 1 4.3561 0.7951 -6.0245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433528014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:26 Heat of formation + Delta-G solvation = 14.124006 kcal Electronic energy + Delta-G solvation = -25788.112657 eV Core-core repulsion = 21888.276501 eV Total energy + Delta-G solvation = -3899.836157 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.56799 -39.98917 -38.12889 -37.82382 -35.61743 -33.47594 -32.54599 -32.23585 -30.75654 -30.50448 -28.45519 -26.09124 -25.62073 -25.29200 -23.48597 -22.85622 -22.20186 -20.79178 -18.88676 -18.08825 -17.61373 -17.11250 -16.79399 -15.92258 -15.84819 -15.71099 -15.60654 -15.53305 -15.24644 -14.88484 -14.53312 -14.33881 -14.15198 -13.89298 -13.51476 -13.02459 -12.89247 -12.55022 -12.48302 -11.80880 -11.74308 -11.59588 -11.25644 -11.20437 -11.10454 -11.02902 -10.76990 -10.34091 -10.29283 -9.98409 -9.93757 -9.20700 -9.18915 -9.09731 -9.05198 -8.70702 -8.10793 -6.76220 -6.32164 -4.06804 0.51666 0.81362 1.17273 1.56251 2.43598 2.84838 3.15662 3.19369 3.22181 3.23841 3.39563 3.64511 3.88381 4.00155 4.18778 4.20697 4.34159 4.60875 4.75830 4.90658 4.94237 4.95898 5.04303 5.10709 5.15418 5.17832 5.27014 5.33737 5.42842 5.48738 5.62802 5.73896 5.77109 5.86934 6.13264 6.26477 6.41608 6.53049 6.55693 6.83747 6.85299 7.06708 7.16051 7.53382 7.88575 8.07991 8.28398 9.13446 10.74587 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.002459 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.231306 B =11385.058269 C =12582.232152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.382 6.382 3 C 0.134 3.866 4 C 0.350 3.650 5 N -0.531 5.531 6 C 0.169 3.831 7 C -0.264 4.264 8 C 0.412 3.588 9 N -0.655 5.655 10 C 0.554 3.446 11 O -0.456 6.456 12 C -0.156 4.156 13 C -0.091 4.091 14 C -0.139 4.139 15 C -0.051 4.051 16 C -0.105 4.105 17 S -0.032 6.032 18 C -0.522 4.522 19 H 0.075 0.925 20 C 0.074 3.926 21 N -0.870 5.870 22 Si 0.921 3.079 23 H -0.273 1.273 24 H -0.282 1.282 25 H -0.272 1.272 26 C -0.015 4.015 27 N -0.495 5.495 28 H 0.043 0.957 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.173 0.827 34 H 0.150 0.850 35 H 0.420 0.580 36 H 0.117 0.883 37 H 0.126 0.874 38 H 0.133 0.867 39 H 0.271 0.729 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -1.601 23.545 24.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.056 3.944 4 C 0.080 3.920 5 N -0.249 5.249 6 C 0.005 3.995 7 C -0.290 4.290 8 C 0.171 3.829 9 N -0.303 5.303 10 C 0.342 3.658 11 O -0.324 6.324 12 C -0.161 4.161 13 C -0.110 4.110 14 C -0.159 4.159 15 C -0.072 4.072 16 C -0.216 4.216 17 S 0.203 5.797 18 C -0.669 4.669 19 H 0.094 0.906 20 C -0.135 4.135 21 N -0.505 5.505 22 Si 0.747 3.253 23 H -0.198 1.198 24 H -0.207 1.207 25 H -0.198 1.198 26 C -0.037 4.037 27 N -0.217 5.217 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.099 0.901 33 H 0.190 0.810 34 H 0.168 0.832 35 H 0.258 0.742 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.151 0.849 39 H 0.081 0.919 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.667 -2.562 22.627 22.927 hybrid contribution 2.212 2.231 0.248 3.151 sum 4.879 -0.331 22.875 23.391 Atomic orbital electron populations 1.22782 0.79993 1.03151 1.00317 1.87915 1.20340 1.26165 1.95537 1.20947 0.84841 0.86189 1.02452 1.22594 0.96649 0.90059 0.82686 1.68207 1.10165 1.16489 1.30048 1.22984 0.89235 0.89219 0.98029 1.22312 1.02712 1.11240 0.92762 1.18666 0.88981 0.89314 0.85934 1.43644 1.10888 1.72244 1.03540 1.18710 0.87468 0.76473 0.83174 1.90905 1.12941 1.42638 1.85936 1.19711 0.93865 1.10129 0.92383 1.21116 0.92710 0.99125 0.98021 1.21074 0.99821 1.02625 0.92336 1.22061 0.93725 0.93168 0.98221 1.22876 0.96756 1.01060 1.00884 1.83665 1.66576 1.15465 1.13999 1.22790 1.46041 0.92201 1.05908 0.90649 1.24997 0.94440 0.98958 0.95120 1.69971 1.36375 1.34038 1.10124 0.86174 0.78676 0.82600 0.77852 1.19849 1.20702 1.19752 1.21930 1.00862 0.91170 0.89743 1.68243 1.07262 1.16132 1.30037 0.93823 0.93447 0.89299 0.90440 0.90099 0.80970 0.83226 0.74150 0.86542 0.85647 0.84878 0.91940 0.84096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.38 -4.99 10.69 -35.23 -0.38 -5.37 16 3 C 0.13 1.61 6.37 36.01 0.23 1.84 16 4 C 0.35 4.85 7.27 -157.24 -1.14 3.70 16 5 N -0.53 -6.40 10.33 -10.80 -0.11 -6.51 16 6 C 0.17 1.49 11.29 -17.28 -0.20 1.29 16 7 C -0.26 -2.27 10.04 -39.12 -0.39 -2.66 16 8 C 0.41 5.20 7.45 -154.46 -1.15 4.05 16 9 N -0.66 -7.68 5.33 -12.15 -0.06 -7.74 16 10 C 0.55 8.82 7.73 -12.34 -0.10 8.72 16 11 O -0.46 -9.06 14.65 5.33 0.08 -8.99 16 12 C -0.16 -2.49 5.87 -105.00 -0.62 -3.10 16 13 C -0.09 -1.14 9.54 -39.12 -0.37 -1.51 16 14 C -0.14 -1.87 10.02 -39.68 -0.40 -2.27 16 15 C -0.05 -0.88 9.79 -39.25 -0.38 -1.27 16 16 C -0.11 -2.18 5.45 -39.00 -0.21 -2.39 16 17 S -0.03 -0.80 21.41 -107.50 -2.30 -3.11 16 18 C -0.52 -14.50 9.46 30.91 0.29 -14.21 16 19 H 0.08 2.07 7.79 -52.48 -0.41 1.66 16 20 C 0.07 2.05 5.49 -17.46 -0.10 1.95 16 21 N -0.87 -25.18 13.22 55.49 0.73 -24.44 16 22 Si 0.92 21.16 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 26 C -0.02 -0.30 9.34 -38.91 -0.36 -0.66 16 27 N -0.50 -7.73 7.94 -9.90 -0.08 -7.81 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.17 0.80 8.06 -52.48 -0.42 0.37 16 34 H 0.15 0.68 8.06 -52.48 -0.42 0.26 16 35 H 0.42 3.12 6.76 -40.82 -0.28 2.85 16 36 H 0.12 0.93 6.41 -52.49 -0.34 0.59 16 37 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 38 H 0.13 2.25 8.06 -52.48 -0.42 1.83 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.14 2.95 7.65 -52.49 -0.40 2.55 16 LS Contribution 370.42 15.07 5.58 5.58 Total: -1.00 -36.19 370.42 -9.71 -45.91 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -4.36 Total: 1.44 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: -3.79 Total: -5.10 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.48 Total: -46.50 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.30 Total: -14.35 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -2.30 Total: -3.11 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.19 -9.71 -45.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433528014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.030 kcal (2) G-P(sol) polarization free energy of solvation -36.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds