Wall clock time and date at job start Wed Apr 1 2020 02:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42906 * 113.99864 * 2 1 4 4 C 1.50700 * 109.46857 * 180.02562 * 3 2 1 5 5 N 1.31806 * 119.08258 * 269.97532 * 4 3 2 6 6 C 1.32501 * 120.99257 * 179.68784 * 5 4 3 7 7 C 1.38203 * 119.18475 * 0.60930 * 6 5 4 8 8 C 1.39513 * 118.33676 * 359.42697 * 7 6 5 9 9 N 1.38952 * 120.52689 * 180.29449 * 8 7 6 10 10 C 1.34780 * 120.00195 * 174.94030 * 9 8 7 11 11 O 1.21538 * 120.00208 * 5.08974 * 10 9 8 12 12 C 1.47819 * 119.99632 * 185.09049 * 10 9 8 13 13 C 1.39693 * 120.10765 * 359.72539 * 12 10 9 14 14 C 1.38028 * 120.03568 * 179.74487 * 13 12 10 15 15 C 1.38186 * 120.24673 * 0.55589 * 14 13 12 16 16 C 1.39183 * 120.20765 * 359.69632 * 15 14 13 17 17 S 1.76199 * 120.02192 * 180.02562 * 16 15 14 18 18 C 1.76201 * 99.99803 * 275.01137 * 17 16 15 19 19 H 1.08006 * 120.00043 * 354.99536 * 18 17 16 20 20 C 1.38728 * 119.99845 * 175.00041 * 18 17 16 21 21 N 1.31622 * 120.00295 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99737 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47310 * 59.99777 * 22 20 18 24 24 H 1.48505 * 109.47124 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47507 * 299.99722 * 22 20 18 26 26 C 1.38873 * 119.95598 * 0.02562 * 16 15 14 27 27 N 1.31732 * 119.08648 * 89.99858 * 4 3 2 28 28 H 1.08990 * 109.47166 * 300.00186 * 1 2 3 29 29 H 1.09001 * 109.46878 * 60.00571 * 1 2 3 30 30 H 1.08996 * 109.46991 * 180.02562 * 1 2 3 31 31 H 1.08993 * 109.47118 * 59.99764 * 3 2 1 32 32 H 1.09000 * 109.46738 * 299.99719 * 3 2 1 33 33 H 1.08003 * 120.40775 * 180.30920 * 6 5 4 34 34 H 1.08008 * 120.83114 * 179.69511 * 7 6 5 35 35 H 0.97009 * 119.99876 * 354.94357 * 9 8 7 36 36 H 1.07998 * 119.97978 * 0.02562 * 13 12 10 37 37 H 1.08000 * 119.88063 * 180.27268 * 14 13 12 38 38 H 1.08007 * 119.89675 * 179.72457 * 15 14 13 39 39 H 0.96995 * 120.00091 * 179.97438 * 21 20 18 40 40 H 1.08002 * 120.11875 * 180.02562 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 7 4.1517 1.1362 1.1510 6 6 5.4714 1.0254 1.1946 7 6 6.1829 0.9750 0.0109 8 6 5.4752 1.0312 -1.1901 9 7 6.1442 0.9779 -2.4068 10 6 5.4458 0.9301 -3.5585 11 8 4.2344 1.0268 -3.5390 12 6 6.1531 0.7600 -4.8452 13 6 7.5458 0.6544 -4.8707 14 6 8.2044 0.4904 -6.0726 15 6 7.4920 0.4414 -7.2557 16 6 6.1045 0.5508 -7.2427 17 16 5.2010 0.4870 -8.7540 18 6 5.3077 2.1756 -9.2457 19 1 5.7665 2.9010 -8.5902 20 6 4.8021 2.5734 -10.4749 21 7 4.2433 1.6893 -11.2740 22 14 4.9146 4.3637 -10.9958 23 1 6.3403 4.7768 -11.0435 24 1 4.3072 4.5269 -12.3411 25 1 4.1864 5.2108 -10.0174 26 6 5.4327 0.7103 -6.0377 27 7 4.1505 1.1361 -1.1521 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 5.9851 0.9800 2.1435 34 1 7.2596 0.8899 0.0154 35 1 7.1141 0.9751 -2.4272 36 1 8.1071 0.6966 -3.9490 37 1 9.2808 0.4046 -6.0889 38 1 8.0134 0.3173 -8.1933 39 1 3.8895 1.9675 -12.1332 40 1 4.3561 0.7951 -6.0245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433528014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:25 Heat of formation + Delta-G solvation = -11.190215 kcal Electronic energy + Delta-G solvation = -25789.210364 eV Core-core repulsion = 21888.276501 eV Total energy + Delta-G solvation = -3900.933864 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.48083 -41.12780 -39.31178 -38.78303 -36.69328 -34.66588 -34.35208 -33.24894 -32.02023 -31.70869 -29.26704 -27.76142 -26.88298 -26.33441 -24.49803 -23.92085 -23.39085 -21.94398 -20.19521 -19.53607 -18.88092 -18.21073 -17.66965 -17.11380 -16.94347 -16.77221 -16.62822 -16.57823 -16.50500 -16.40199 -15.77360 -15.44716 -15.37414 -14.93993 -14.76315 -14.63675 -13.90499 -13.68617 -13.32021 -13.29247 -13.13659 -12.97041 -12.78601 -12.69727 -12.43849 -12.41079 -11.85328 -11.78487 -11.45661 -11.23271 -11.22320 -10.80460 -10.79408 -10.12499 -10.09094 -9.87780 -9.72973 -8.83424 -8.40287 -6.20959 -0.44779 -0.15031 0.15597 0.24854 1.28244 1.37950 1.43097 1.48413 1.64480 1.73338 2.22373 2.36865 2.71973 2.81407 2.92759 3.06749 3.36038 3.40102 3.51563 3.67697 3.89903 3.97966 4.04947 4.18637 4.26831 4.30688 4.37837 4.46006 4.48630 4.50612 4.54635 4.63093 4.80856 4.87498 4.98731 5.14446 5.28079 5.36685 5.42048 5.47171 5.69666 5.83315 6.03462 6.14293 6.28063 6.85941 6.99829 7.16968 8.66781 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.002459 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.231306 B =11385.058269 C =12582.232152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.134 3.866 4 C 0.324 3.676 5 N -0.540 5.540 6 C 0.164 3.836 7 C -0.232 4.232 8 C 0.377 3.623 9 N -0.633 5.633 10 C 0.556 3.444 11 O -0.510 6.510 12 C -0.156 4.156 13 C -0.059 4.059 14 C -0.118 4.118 15 C -0.060 4.060 16 C -0.128 4.128 17 S -0.099 6.099 18 C -0.536 4.536 19 H 0.068 0.932 20 C 0.020 3.980 21 N -0.907 5.907 22 Si 0.992 3.008 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.270 1.270 26 C -0.041 4.041 27 N -0.543 5.543 28 H 0.065 0.935 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.221 0.779 34 H 0.203 0.797 35 H 0.441 0.559 36 H 0.182 0.818 37 H 0.179 0.821 38 H 0.132 0.868 39 H 0.274 0.726 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.330 -0.750 27.017 28.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C 0.056 3.944 4 C 0.055 3.945 5 N -0.258 5.258 6 C 0.001 3.999 7 C -0.257 4.257 8 C 0.138 3.862 9 N -0.284 5.284 10 C 0.344 3.656 11 O -0.382 6.382 12 C -0.161 4.161 13 C -0.077 4.077 14 C -0.138 4.138 15 C -0.081 4.081 16 C -0.239 4.239 17 S 0.136 5.864 18 C -0.683 4.683 19 H 0.087 0.913 20 C -0.185 4.185 21 N -0.543 5.543 22 Si 0.814 3.186 23 H -0.184 1.184 24 H -0.196 1.196 25 H -0.195 1.195 26 C -0.063 4.063 27 N -0.265 5.265 28 H 0.084 0.916 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.085 0.915 33 H 0.237 0.763 34 H 0.220 0.780 35 H 0.285 0.715 36 H 0.199 0.801 37 H 0.196 0.804 38 H 0.150 0.850 39 H 0.083 0.917 40 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.968 -1.723 26.142 27.110 hybrid contribution 0.978 1.888 -0.564 2.200 sum 7.946 0.165 25.579 26.785 Atomic orbital electron populations 1.22979 0.78272 1.04176 1.01333 1.87861 1.22401 1.27022 1.95714 1.21003 0.84793 0.85901 1.02741 1.22760 0.97271 0.91536 0.82949 1.68246 1.12129 1.16342 1.29100 1.23889 0.88200 0.87630 1.00164 1.22809 1.04956 1.07403 0.90501 1.19109 0.88767 0.91089 0.87227 1.43254 1.11644 1.71301 1.02166 1.18719 0.86898 0.75789 0.84216 1.90894 1.15320 1.45264 1.86750 1.19768 0.95518 1.09835 0.91015 1.21767 0.90894 0.94605 1.00445 1.21578 1.02077 0.99630 0.90473 1.22137 0.92103 0.93473 1.00387 1.22463 0.97984 1.05385 0.98049 1.83574 1.69312 1.15423 1.18086 1.23021 1.46048 0.93081 1.06183 0.91333 1.26011 0.93772 1.03757 0.95003 1.70102 1.37326 1.36293 1.10572 0.85096 0.79315 0.76601 0.77618 1.18398 1.19641 1.19536 1.21608 0.99608 0.93782 0.91335 1.68113 1.09562 1.17354 1.31462 0.91613 0.93595 0.88317 0.88309 0.91495 0.76259 0.78020 0.71499 0.80119 0.80358 0.85019 0.91675 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.22 10.69 -148.98 -1.59 -12.81 16 3 C 0.13 3.37 6.37 71.24 0.45 3.82 16 4 C 0.32 9.02 7.27 138.77 1.01 10.03 16 5 N -0.54 -12.03 10.33 -188.07 -1.94 -13.97 16 6 C 0.16 2.20 11.29 84.58 0.96 3.15 16 7 C -0.23 -2.87 10.04 22.57 0.23 -2.64 16 8 C 0.38 8.69 7.45 133.01 0.99 9.68 16 9 N -0.63 -12.95 5.33 -310.64 -1.65 -14.60 16 10 C 0.56 17.48 7.73 86.78 0.67 18.15 16 11 O -0.51 -21.52 14.65 -3.83 -0.06 -21.58 16 12 C -0.16 -4.83 5.87 -20.11 -0.12 -4.95 16 13 C -0.06 -1.19 9.54 22.57 0.22 -0.97 16 14 C -0.12 -2.63 10.02 22.21 0.22 -2.40 16 15 C -0.06 -2.04 9.79 22.48 0.22 -1.82 16 16 C -0.13 -5.55 5.45 22.65 0.12 -5.43 16 17 S -0.10 -5.41 21.41 -56.49 -1.21 -6.62 16 18 C -0.54 -31.32 9.46 67.94 0.64 -30.67 16 19 H 0.07 3.94 7.79 -2.91 -0.02 3.91 16 20 C 0.02 1.14 5.49 84.84 0.47 1.60 16 21 N -0.91 -54.69 13.22 21.64 0.29 -54.40 16 22 Si 0.99 44.30 29.55 68.60 2.03 46.33 16 23 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 24 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 26 C -0.04 -1.72 9.34 22.70 0.21 -1.51 16 27 N -0.54 -17.11 7.94 -185.24 -1.47 -18.59 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.81 16 30 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.22 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.20 0.27 8.06 -2.91 -0.02 0.25 16 35 H 0.44 4.05 6.76 -92.70 -0.63 3.42 16 36 H 0.18 1.35 6.41 -2.91 -0.02 1.33 16 37 H 0.18 2.24 8.06 -2.91 -0.02 2.21 16 38 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 39 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 40 H 0.10 4.96 7.65 -2.91 -0.02 4.94 16 Total: -1.00 -90.52 370.42 2.40 -88.12 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: 0.47 Total: 10.30 kcal Atomic # 6 Polarization: -9.72 SS G_CDS: 7.54 Total: -2.19 kcal Atomic # 7 Polarization: -96.78 SS G_CDS: -4.78 Total: -101.57 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -1.65 Total: -34.39 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -5.41 SS G_CDS: -1.21 Total: -6.62 kcal Total: -90.52 2.40 -88.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433528014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.931 kcal (2) G-P(sol) polarization free energy of solvation -90.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds