Wall clock time and date at job start Wed Apr 1 2020 02:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34131 * 125.70287 * 2 1 4 4 C 1.38454 * 107.37046 * 180.02562 * 3 2 1 5 5 C 1.46664 * 126.47701 * 180.02562 * 4 3 2 6 6 O 1.21316 * 119.99888 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00240 * 179.97438 * 5 4 3 8 8 N 1.46497 * 109.47456 * 179.97438 * 7 5 4 9 9 C 1.34780 * 120.00366 * 180.02562 * 8 7 5 10 10 O 1.21604 * 119.99709 * 0.02562 * 9 8 7 11 11 C 1.47429 * 119.99956 * 180.02562 * 9 8 7 12 12 C 1.39672 * 120.21756 * 0.25452 * 11 9 8 13 13 C 1.37810 * 119.93747 * 180.27711 * 12 11 9 14 14 C 1.38652 * 120.38325 * 359.72378 * 13 12 11 15 15 C 1.37911 * 120.43793 * 0.02562 * 14 13 12 16 16 C 1.39120 * 120.05120 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18970 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00220 * 353.15297 * 17 16 15 19 19 H 1.08001 * 119.99783 * 354.35202 * 18 17 16 20 20 C 1.38812 * 120.00190 * 174.34598 * 18 17 16 21 21 N 1.31553 * 119.99601 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47337 * 119.99683 * 22 20 18 25 25 H 1.48503 * 109.46956 * 240.00297 * 22 20 18 26 26 C 1.41553 * 107.04632 * 0.26183 * 4 3 2 27 27 N 1.30368 * 107.98732 * 359.55588 * 26 4 3 28 28 H 1.08997 * 109.47385 * 90.00262 * 1 2 3 29 29 H 1.09000 * 109.47032 * 209.99897 * 1 2 3 30 30 H 1.08994 * 109.47623 * 329.99833 * 1 2 3 31 31 H 1.07997 * 126.31584 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47041 * 59.99856 * 7 5 4 33 33 H 1.09003 * 109.47617 * 300.00181 * 7 5 4 34 34 H 0.97001 * 120.00026 * 0.02562 * 8 7 5 35 35 H 1.08008 * 120.03189 * 359.97438 * 12 11 9 36 36 H 1.07999 * 119.80841 * 179.74372 * 13 12 11 37 37 H 1.07997 * 119.78260 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.98204 * 180.02562 * 15 14 13 39 39 H 0.97004 * 119.99870 * 180.02562 * 21 20 18 40 40 H 1.08010 * 126.00741 * 179.70094 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2477 1.0892 0.0000 4 6 3.5620 0.6537 -0.0006 5 6 4.7606 1.4990 -0.0003 6 8 4.6508 2.7071 0.0010 7 6 6.1285 0.8667 -0.0004 8 7 7.1513 1.9155 -0.0007 9 6 8.4575 1.5831 -0.0014 10 8 8.7870 0.4125 -0.0023 11 6 9.4868 2.6386 -0.0010 12 6 9.1134 3.9845 0.0053 13 6 10.0803 4.9665 -0.0002 14 6 11.4246 4.6270 -0.0063 15 6 11.8108 3.3031 -0.0074 16 6 10.8500 2.2970 -0.0019 17 16 11.3393 0.6044 -0.0041 18 6 13.0782 0.7889 -0.2204 19 1 13.4996 1.7675 -0.3971 20 6 13.9066 -0.3235 -0.1637 21 7 13.3932 -1.5156 0.0511 22 14 15.7502 -0.1279 -0.3923 23 1 16.0717 1.3042 -0.6185 24 1 16.4536 -0.6073 0.8244 25 1 16.1908 -0.9248 -1.5654 26 6 3.5302 -0.7614 -0.0071 27 7 2.2816 -1.1361 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.9143 2.1164 0.0004 32 1 6.2427 0.2481 -0.8906 33 1 6.2428 0.2475 0.8893 34 1 6.8886 2.8492 -0.0003 35 1 8.0678 4.2554 0.0096 36 1 9.7892 6.0065 0.0006 37 1 12.1742 5.4044 -0.0101 38 1 12.8600 3.0470 -0.0118 39 1 13.9721 -2.2929 0.0911 40 1 4.3895 -1.4158 -0.0138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434402333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:00 Heat of formation + Delta-G solvation = 41.761985 kcal Electronic energy + Delta-G solvation = -25688.248704 eV Core-core repulsion = 21789.611020 eV Total energy + Delta-G solvation = -3898.637684 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71269 -39.77451 -38.78714 -37.33440 -34.18569 -33.86350 -32.72597 -31.09380 -30.64679 -30.22674 -28.65885 -26.74158 -25.79531 -23.50865 -22.50972 -21.85021 -21.33137 -20.10229 -19.86018 -18.36313 -17.52680 -17.04249 -16.14192 -15.99380 -15.85433 -15.41900 -15.30623 -15.12562 -14.70429 -14.66563 -14.10590 -13.95727 -13.80199 -13.61007 -13.29523 -13.15292 -13.04057 -12.94117 -12.62388 -12.51930 -11.79730 -11.55381 -11.34588 -11.19582 -11.16638 -10.88854 -10.29940 -10.02455 -9.97657 -9.78471 -9.63685 -9.47820 -9.11591 -8.81088 -8.69361 -8.28847 -8.04261 -6.49899 -6.43783 -4.13659 0.93613 1.57049 1.68315 1.92657 2.06992 2.85725 3.12803 3.14070 3.22354 3.33771 3.46810 3.54176 3.86365 4.09004 4.22497 4.30882 4.53146 4.58608 4.66641 4.86735 4.90648 4.97382 5.06911 5.16600 5.32339 5.43413 5.44672 5.48414 5.59389 5.65786 5.99605 6.05246 6.16989 6.33782 6.43252 6.64033 6.70257 6.90392 7.07010 7.11949 7.17650 7.37811 7.48155 7.63416 7.92869 8.19462 8.79027 9.02807 10.59581 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002318 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.423931 B =12075.377750 C =13715.385344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.364 5.364 3 C 0.131 3.869 4 C -0.322 4.322 5 C 0.430 3.570 6 O -0.470 6.470 7 C 0.082 3.918 8 N -0.733 5.733 9 C 0.555 3.445 10 O -0.509 6.509 11 C -0.177 4.177 12 C -0.060 4.060 13 C -0.186 4.186 14 C -0.076 4.076 15 C -0.154 4.154 16 C -0.056 4.056 17 S 0.183 5.817 18 C -0.594 4.594 19 H 0.091 0.909 20 C 0.083 3.917 21 N -0.858 5.858 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.098 3.902 27 N -0.300 5.300 28 H 0.081 0.919 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.189 0.811 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.404 0.596 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.139 0.861 39 H 0.274 0.726 40 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.038 6.518 0.154 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.141 5.141 3 C -0.021 4.021 4 C -0.335 4.335 5 C 0.309 3.691 6 O -0.346 6.346 7 C -0.043 4.043 8 N -0.391 5.391 9 C 0.344 3.656 10 O -0.387 6.387 11 C -0.192 4.192 12 C -0.080 4.080 13 C -0.211 4.211 14 C -0.098 4.098 15 C -0.179 4.179 16 C -0.176 4.176 17 S 0.447 5.553 18 C -0.741 4.741 19 H 0.109 0.891 20 C -0.128 4.128 21 N -0.491 5.491 22 Si 0.744 3.256 23 H -0.192 1.192 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.090 4.090 27 N -0.119 5.119 28 H 0.100 0.900 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.205 0.795 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.242 0.758 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.130 0.870 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -24.274 3.650 0.288 24.549 hybrid contribution 2.152 2.408 -0.249 3.239 sum -22.123 6.058 0.040 22.937 Atomic orbital electron populations 1.22031 0.73387 1.05140 1.04075 1.48495 1.07438 1.04011 1.54175 1.23231 0.90441 0.93817 0.94646 1.20773 0.93950 0.94491 1.24312 1.21506 0.89185 0.88014 0.70430 1.90513 1.89050 1.16375 1.38705 1.21397 0.85691 0.92202 1.05008 1.45638 1.05035 1.09934 1.78478 1.18288 0.81624 0.88998 0.76640 1.90782 1.80250 1.19061 1.48572 1.19049 0.91747 0.92567 1.15805 1.20959 0.98330 0.91855 0.96852 1.20646 0.93033 0.98195 1.09216 1.21090 0.95681 0.95878 0.97184 1.21432 1.00262 0.91911 1.04295 1.23086 0.94156 1.03484 0.96847 1.84715 1.02020 0.93147 1.75396 1.24097 0.95497 0.97693 1.56812 0.89097 1.25099 1.00221 0.94282 0.93209 1.69986 1.36562 0.98699 1.43834 0.86103 0.82354 0.78883 0.78212 1.19160 1.20264 1.20263 1.24352 0.95363 0.93937 0.95333 1.77222 1.02187 1.07493 1.24987 0.90040 0.88677 0.88945 0.79456 0.87941 0.87930 0.75822 0.86936 0.87036 0.87020 0.84356 0.91618 0.78390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.29 11.44 59.84 0.68 0.97 16 2 N -0.36 -2.75 3.97 -67.52 -0.27 -3.02 16 3 C 0.13 1.01 11.30 -16.47 -0.19 0.83 16 4 C -0.32 -3.08 6.11 -105.15 -0.64 -3.72 16 5 C 0.43 4.78 7.20 -30.91 -0.22 4.56 16 6 O -0.47 -6.16 16.21 5.53 0.09 -6.07 16 7 C 0.08 1.00 5.64 -5.20 -0.03 0.97 16 8 N -0.73 -11.09 5.48 -62.57 -0.34 -11.43 16 9 C 0.55 10.85 7.75 -12.52 -0.10 10.76 16 10 O -0.51 -11.64 13.77 5.27 0.07 -11.57 16 11 C -0.18 -3.57 5.89 -104.75 -0.62 -4.19 16 12 C -0.06 -1.00 9.53 -39.20 -0.37 -1.37 16 13 C -0.19 -2.98 10.02 -39.58 -0.40 -3.38 16 14 C -0.08 -1.33 10.03 -39.55 -0.40 -1.72 16 15 C -0.15 -3.26 9.22 -39.37 -0.36 -3.62 16 16 C -0.06 -1.29 6.15 -38.39 -0.24 -1.53 16 17 S 0.18 4.90 18.56 -107.50 -2.00 2.91 16 18 C -0.59 -16.42 9.00 30.94 0.28 -16.14 16 19 H 0.09 2.39 4.98 -52.49 -0.26 2.13 16 20 C 0.08 2.27 5.49 -17.46 -0.10 2.17 16 21 N -0.86 -24.70 13.22 55.49 0.73 -23.97 16 22 Si 0.92 20.74 29.55 -169.99 -5.02 15.72 16 23 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.10 0.90 11.55 -16.91 -0.20 0.71 16 27 N -0.30 -2.99 12.49 30.91 0.39 -2.61 16 28 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.06 8.14 -51.93 -0.42 -0.36 16 31 H 0.19 0.96 8.06 -52.49 -0.42 0.54 16 32 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 5.59 5.47 -40.82 -0.22 5.37 16 35 H 0.11 1.52 6.40 -52.48 -0.34 1.19 16 36 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.14 3.04 5.04 -52.49 -0.26 2.78 16 39 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.20 1.36 8.04 -52.48 -0.42 0.93 16 LS Contribution 364.00 15.07 5.49 5.49 Total: -1.00 -35.63 364.00 -7.78 -43.41 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.02 Total: 5.84 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -2.89 Total: -14.70 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 0.51 Total: -41.02 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: 0.16 Total: -17.64 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 4.90 SS G_CDS: -2.00 Total: 2.91 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.63 -7.78 -43.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434402333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.171 kcal (2) G-P(sol) polarization free energy of solvation -35.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds