Wall clock time and date at job start Wed Apr 1 2020 02:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34131 * 125.70287 * 2 1 4 4 C 1.38454 * 107.37046 * 180.02562 * 3 2 1 5 5 C 1.46664 * 126.47701 * 180.02562 * 4 3 2 6 6 O 1.21316 * 119.99888 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.00240 * 179.97438 * 5 4 3 8 8 N 1.46497 * 109.47456 * 179.97438 * 7 5 4 9 9 C 1.34780 * 120.00366 * 180.02562 * 8 7 5 10 10 O 1.21604 * 119.99709 * 0.02562 * 9 8 7 11 11 C 1.47429 * 119.99956 * 180.02562 * 9 8 7 12 12 C 1.39672 * 120.21756 * 0.25452 * 11 9 8 13 13 C 1.37810 * 119.93747 * 180.27711 * 12 11 9 14 14 C 1.38652 * 120.38325 * 359.72378 * 13 12 11 15 15 C 1.37911 * 120.43793 * 0.02562 * 14 13 12 16 16 C 1.39120 * 120.05120 * 359.97438 * 15 14 13 17 17 S 1.76194 * 120.18970 * 179.97438 * 16 15 14 18 18 C 1.76196 * 100.00220 * 353.15297 * 17 16 15 19 19 H 1.08001 * 119.99783 * 354.35202 * 18 17 16 20 20 C 1.38812 * 120.00190 * 174.34598 * 18 17 16 21 21 N 1.31553 * 119.99601 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47050 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47337 * 119.99683 * 22 20 18 25 25 H 1.48503 * 109.46956 * 240.00297 * 22 20 18 26 26 C 1.41553 * 107.04632 * 0.26183 * 4 3 2 27 27 N 1.30368 * 107.98732 * 359.55588 * 26 4 3 28 28 H 1.08997 * 109.47385 * 90.00262 * 1 2 3 29 29 H 1.09000 * 109.47032 * 209.99897 * 1 2 3 30 30 H 1.08994 * 109.47623 * 329.99833 * 1 2 3 31 31 H 1.07997 * 126.31584 * 0.02562 * 3 2 1 32 32 H 1.08998 * 109.47041 * 59.99856 * 7 5 4 33 33 H 1.09003 * 109.47617 * 300.00181 * 7 5 4 34 34 H 0.97001 * 120.00026 * 0.02562 * 8 7 5 35 35 H 1.08008 * 120.03189 * 359.97438 * 12 11 9 36 36 H 1.07999 * 119.80841 * 179.74372 * 13 12 11 37 37 H 1.07997 * 119.78260 * 180.02562 * 14 13 12 38 38 H 1.07999 * 119.98204 * 180.02562 * 15 14 13 39 39 H 0.97004 * 119.99870 * 180.02562 * 21 20 18 40 40 H 1.08010 * 126.00741 * 179.70094 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2477 1.0892 0.0000 4 6 3.5620 0.6537 -0.0006 5 6 4.7606 1.4990 -0.0003 6 8 4.6508 2.7071 0.0010 7 6 6.1285 0.8667 -0.0004 8 7 7.1513 1.9155 -0.0007 9 6 8.4575 1.5831 -0.0014 10 8 8.7870 0.4125 -0.0023 11 6 9.4868 2.6386 -0.0010 12 6 9.1134 3.9845 0.0053 13 6 10.0803 4.9665 -0.0002 14 6 11.4246 4.6270 -0.0063 15 6 11.8108 3.3031 -0.0074 16 6 10.8500 2.2970 -0.0019 17 16 11.3393 0.6044 -0.0041 18 6 13.0782 0.7889 -0.2204 19 1 13.4996 1.7675 -0.3971 20 6 13.9066 -0.3235 -0.1637 21 7 13.3932 -1.5156 0.0511 22 14 15.7502 -0.1279 -0.3923 23 1 16.0717 1.3042 -0.6185 24 1 16.4536 -0.6073 0.8244 25 1 16.1908 -0.9248 -1.5654 26 6 3.5302 -0.7614 -0.0071 27 7 2.2816 -1.1361 -0.0006 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.9143 2.1164 0.0004 32 1 6.2427 0.2481 -0.8906 33 1 6.2428 0.2475 0.8893 34 1 6.8886 2.8492 -0.0003 35 1 8.0678 4.2554 0.0096 36 1 9.7892 6.0065 0.0006 37 1 12.1742 5.4044 -0.0101 38 1 12.8600 3.0470 -0.0118 39 1 13.9721 -2.2929 0.0911 40 1 4.3895 -1.4158 -0.0138 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434402333.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:59 Heat of formation + Delta-G solvation = 17.094066 kcal Electronic energy + Delta-G solvation = -25689.318385 eV Core-core repulsion = 21789.611020 eV Total energy + Delta-G solvation = -3899.707365 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.36918 -41.10738 -39.91770 -38.84102 -35.50448 -34.73935 -34.44233 -32.36663 -31.77167 -31.55877 -29.52399 -27.81636 -27.45485 -24.74554 -23.60715 -23.25451 -21.99578 -21.53246 -20.76743 -19.91587 -18.92437 -18.06475 -17.34160 -17.19683 -17.02797 -16.87035 -16.34884 -16.18304 -16.04986 -15.48789 -15.35964 -15.34701 -15.18977 -14.96915 -14.64717 -14.16552 -13.86046 -13.75356 -13.50505 -13.47010 -13.28988 -13.23429 -12.98543 -12.84984 -12.52836 -12.04122 -12.00041 -11.48930 -11.40980 -11.29342 -10.85315 -10.63202 -10.40263 -10.19915 -9.90613 -9.78992 -9.73208 -8.43853 -8.42899 -6.21219 0.04454 0.21981 0.55136 0.98340 1.28864 1.36994 1.45147 1.47366 1.66805 2.01320 2.09784 2.10180 2.25636 2.89571 3.00081 3.05732 3.27409 3.68313 3.79768 3.94668 4.03351 4.11604 4.24562 4.28555 4.42113 4.43580 4.50968 4.56875 4.63104 4.65289 4.70905 4.76217 4.87711 5.12329 5.35946 5.38469 5.44426 5.48985 5.58291 5.69008 5.84226 6.11875 6.18469 6.40829 6.54921 6.59316 6.98427 7.32443 8.62619 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.016758 B = 0.002318 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.423931 B =12075.377750 C =13715.385344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.360 5.360 3 C 0.144 3.856 4 C -0.346 4.346 5 C 0.445 3.555 6 O -0.491 6.491 7 C 0.076 3.924 8 N -0.715 5.715 9 C 0.550 3.450 10 O -0.549 6.549 11 C -0.182 4.182 12 C -0.056 4.056 13 C -0.158 4.158 14 C -0.068 4.068 15 C -0.174 4.174 16 C -0.072 4.072 17 S 0.071 5.929 18 C -0.602 4.602 19 H 0.094 0.906 20 C 0.024 3.976 21 N -0.904 5.904 22 Si 0.993 3.007 23 H -0.258 1.258 24 H -0.270 1.270 25 H -0.271 1.271 26 C 0.094 3.906 27 N -0.331 5.331 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.122 0.878 31 H 0.217 0.783 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.413 0.587 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.151 0.849 38 H 0.121 0.879 39 H 0.276 0.724 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.079 10.529 0.024 27.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.137 5.137 3 C -0.010 4.010 4 C -0.359 4.359 5 C 0.325 3.675 6 O -0.369 6.369 7 C -0.049 4.049 8 N -0.371 5.371 9 C 0.339 3.661 10 O -0.428 6.428 11 C -0.195 4.195 12 C -0.076 4.076 13 C -0.181 4.181 14 C -0.089 4.089 15 C -0.199 4.199 16 C -0.190 4.190 17 S 0.330 5.670 18 C -0.748 4.748 19 H 0.112 0.888 20 C -0.182 4.182 21 N -0.539 5.539 22 Si 0.814 3.186 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.093 4.093 27 N -0.151 5.151 28 H 0.113 0.887 29 H 0.115 0.885 30 H 0.140 0.860 31 H 0.234 0.766 32 H 0.125 0.875 33 H 0.125 0.875 34 H 0.252 0.748 35 H 0.171 0.829 36 H 0.182 0.818 37 H 0.168 0.832 38 H 0.138 0.862 39 H 0.085 0.915 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -26.415 7.750 0.158 27.528 hybrid contribution 2.405 1.477 -0.203 2.830 sum -24.009 9.227 -0.045 25.721 Atomic orbital electron populations 1.22437 0.70871 1.06761 1.05476 1.48868 1.08839 1.03296 1.52710 1.23666 0.89780 0.94967 0.92600 1.20676 0.94157 0.94402 1.26649 1.21277 0.88825 0.87713 0.69656 1.90499 1.89106 1.16961 1.40350 1.21610 0.85877 0.91770 1.05597 1.45466 1.04055 1.11127 1.76475 1.18395 0.82941 0.88357 0.76374 1.90783 1.81030 1.20627 1.50406 1.19433 0.90834 0.94665 1.14585 1.21430 1.00889 0.90042 0.95250 1.21305 0.91835 1.00520 1.04432 1.21536 0.97714 0.94738 0.94919 1.21460 0.99215 0.93504 1.05749 1.23001 0.95948 1.01091 0.98969 1.84847 1.03242 0.98243 1.80710 1.24287 0.95558 0.98018 1.56962 0.88803 1.26136 1.05286 0.93797 0.92955 1.70131 1.38256 0.99567 1.45934 0.84996 0.76000 0.79226 0.78349 1.18115 1.19507 1.19635 1.24599 0.95707 0.94210 0.94796 1.77176 1.02715 1.09139 1.26070 0.88710 0.88516 0.85956 0.76618 0.87491 0.87466 0.74756 0.82938 0.81844 0.83175 0.86158 0.91522 0.77385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.30 11.44 127.77 1.46 1.76 16 2 N -0.36 -4.73 3.97 -367.54 -1.46 -6.19 16 3 C 0.14 1.89 11.30 84.39 0.95 2.84 16 4 C -0.35 -6.18 6.11 -20.21 -0.12 -6.30 16 5 C 0.44 9.33 7.20 27.89 0.20 9.53 16 6 O -0.49 -11.82 16.21 -3.14 -0.05 -11.87 16 7 C 0.08 1.83 5.64 85.63 0.48 2.31 16 8 N -0.71 -20.95 5.48 -470.11 -2.58 -23.52 16 9 C 0.55 21.84 7.75 86.66 0.67 22.51 16 10 O -0.55 -26.56 13.77 -4.04 -0.06 -26.62 16 11 C -0.18 -7.25 5.89 -19.95 -0.12 -7.37 16 12 C -0.06 -1.65 9.53 22.52 0.21 -1.44 16 13 C -0.16 -4.15 10.02 22.27 0.22 -3.93 16 14 C -0.07 -2.12 10.03 22.29 0.22 -1.89 16 15 C -0.17 -7.35 9.22 22.40 0.21 -7.14 16 16 C -0.07 -3.42 6.15 23.04 0.14 -3.28 16 17 S 0.07 4.09 18.56 -56.49 -1.05 3.04 16 18 C -0.60 -35.24 9.00 67.96 0.61 -34.63 16 19 H 0.09 5.20 4.98 -2.91 -0.01 5.19 16 20 C 0.02 1.37 5.49 84.87 0.47 1.84 16 21 N -0.90 -55.31 13.22 21.65 0.29 -55.02 16 22 Si 0.99 44.13 29.55 68.60 2.03 46.16 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 24 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 26 C 0.09 1.69 11.55 85.73 0.99 2.68 16 27 N -0.33 -6.35 12.49 -56.13 -0.70 -7.05 16 28 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.10 0.34 8.14 -2.39 -0.02 0.33 16 30 H 0.12 -0.28 8.14 -2.39 -0.02 -0.30 16 31 H 0.22 1.44 8.06 -2.91 -0.02 1.42 16 32 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 33 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.41 10.41 5.47 -92.71 -0.51 9.90 16 35 H 0.15 3.29 6.40 -2.91 -0.02 3.27 16 36 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 37 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 38 H 0.12 5.46 5.04 -2.91 -0.01 5.44 16 39 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 40 H 0.21 2.93 8.04 -2.91 -0.02 2.91 16 Total: -1.00 -84.79 364.00 3.63 -81.15 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.60 Total: 22.45 kcal Atomic # 6 Polarization: -29.12 SS G_CDS: 6.61 Total: -22.52 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -4.45 Total: -91.79 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -0.11 Total: -38.49 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Atomic # 16 Polarization: 4.09 SS G_CDS: -1.05 Total: 3.04 kcal Total: -84.79 3.63 -81.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434402333.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.248 kcal (2) G-P(sol) polarization free energy of solvation -84.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds