Wall clock time and date at job start Wed Apr 1 2020 02:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21274 * 120.00571 * 2 1 4 4 C 1.46962 * 119.99577 * 180.02562 * 2 1 3 5 5 N 1.30479 * 124.74500 * 359.97226 * 4 2 1 6 6 C 1.30190 * 117.39722 * 180.02562 * 5 4 2 7 7 C 1.37339 * 114.01059 * 0.02562 * 6 5 4 8 8 C 1.47249 * 126.15225 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99894 * 354.50849 * 8 7 6 10 10 N 1.34777 * 120.00116 * 174.50745 * 8 7 6 11 11 C 1.46506 * 119.99692 * 184.70227 * 10 8 7 12 12 C 1.50700 * 109.46753 * 275.00908 * 11 10 8 13 13 H 1.08001 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00007 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00587 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99735 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47540 * 89.99866 * 16 14 12 18 18 H 1.48504 * 109.46802 * 210.00154 * 16 14 12 19 19 H 1.48501 * 109.47134 * 329.99939 * 16 14 12 20 20 C 1.46496 * 120.00100 * 4.69952 * 10 8 7 21 21 C 1.50699 * 109.46929 * 84.49704 * 20 10 8 22 22 C 1.38231 * 119.61496 * 94.98065 * 21 20 10 23 23 C 1.38631 * 119.15766 * 179.78739 * 22 21 20 24 24 C 1.38672 * 118.42025 * 0.47594 * 23 22 21 25 25 C 1.38174 * 119.16440 * 359.49878 * 24 23 22 26 26 N 1.31846 * 119.61960 * 275.00002 * 21 20 10 27 27 S 1.70926 * 124.73966 * 180.28778 * 4 2 1 28 28 H 1.08994 * 109.47111 * 239.99883 * 1 2 3 29 29 H 1.09000 * 109.46409 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47401 * 119.99531 * 1 2 3 31 31 H 1.07996 * 122.98789 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47093 * 35.00736 * 11 10 8 33 33 H 1.08997 * 109.46830 * 155.01205 * 11 10 8 34 34 H 0.96995 * 120.00217 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.46941 * 324.50176 * 20 10 8 36 36 H 1.09000 * 109.47407 * 204.49820 * 20 10 8 37 37 H 1.07995 * 120.42051 * 359.97438 * 22 21 20 38 38 H 1.07999 * 120.78854 * 180.23082 * 23 22 21 39 39 H 1.07998 * 120.41770 * 179.78276 * 24 23 22 40 40 H 1.08003 * 119.62106 * 180.24869 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 6 2.2417 -1.2728 -0.0006 5 7 1.6850 -2.4528 -0.0006 6 6 2.4747 -3.4878 -0.0006 7 6 3.8111 -3.1711 -0.0001 8 6 4.9305 -4.1277 0.0006 9 8 4.7116 -5.3198 0.1015 10 7 6.1977 -3.6823 -0.1106 11 6 7.3035 -4.6377 -0.2137 12 6 7.7280 -5.0656 1.1675 13 1 7.2241 -4.6662 2.0353 14 6 8.7596 -5.9670 1.3234 15 7 9.1304 -6.3401 2.5287 16 14 9.6306 -6.6583 -0.1776 17 1 10.7782 -5.7845 -0.5303 18 1 10.1240 -8.0264 0.1229 19 1 8.6818 -6.7138 -1.3187 20 6 6.4692 -2.2428 -0.1285 21 6 6.5548 -1.7302 1.2860 22 6 7.7884 -1.6235 1.9005 23 6 7.8565 -1.1466 3.2004 24 6 6.6752 -0.8028 3.8400 25 6 5.4788 -0.9361 3.1618 26 7 5.4521 -1.3891 1.9234 27 16 3.9451 -1.4142 0.0064 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3632 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 2.1112 -4.5048 -0.0010 32 1 6.9783 -5.5101 -0.7805 33 1 8.1444 -4.1665 -0.7226 34 1 9.8559 -6.9745 2.6383 35 1 5.6646 -1.7278 -0.6535 36 1 7.4137 -2.0575 -0.6399 37 1 8.6880 -1.9051 1.3734 38 1 8.8068 -1.0489 3.7043 39 1 6.6905 -0.4312 4.8540 40 1 4.5546 -0.6667 3.6515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001443569546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:51 Heat of formation + Delta-G solvation = 40.631669 kcal Electronic energy + Delta-G solvation = -27885.074665 eV Core-core repulsion = 23986.387967 eV Total energy + Delta-G solvation = -3898.686698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.32963 -39.85951 -39.15100 -38.29802 -35.50800 -32.98805 -32.32263 -31.45361 -31.32167 -29.71917 -28.26271 -26.80779 -25.88637 -23.59715 -23.01565 -22.15978 -21.68939 -20.28686 -18.36834 -18.14661 -17.25038 -16.75048 -16.64953 -16.29395 -15.77972 -15.54173 -15.39233 -15.05555 -14.81238 -14.59447 -14.19701 -13.93613 -13.76758 -13.55008 -13.24160 -13.04042 -12.87709 -12.55942 -12.44860 -12.29857 -12.24149 -11.88777 -11.68830 -11.25484 -11.03650 -10.66840 -10.44039 -10.33146 -10.07598 -9.73042 -9.68093 -9.40099 -9.23884 -8.95262 -8.86023 -8.67764 -8.18071 -8.00376 -6.16931 -4.16463 0.08523 1.18407 1.32434 1.54387 1.87991 1.90327 3.00573 3.17691 3.26830 3.30444 3.40834 3.65412 3.85043 4.01787 4.30336 4.33453 4.54796 4.71331 4.89489 4.97818 5.03936 5.14506 5.16562 5.21962 5.34934 5.40032 5.41085 5.44015 5.51133 5.67082 5.83322 5.89998 6.24964 6.31936 6.36024 6.40942 6.77705 6.81194 7.02680 7.17592 7.45967 7.80299 7.91360 7.97587 8.34990 8.66678 8.87755 9.41627 10.96100 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.004287 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.618602 B = 6529.937588 C = 7824.111169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.441 3.559 3 O -0.459 6.459 4 C -0.162 4.162 5 N -0.443 5.443 6 C 0.096 3.904 7 C -0.297 4.297 8 C 0.591 3.409 9 O -0.508 6.508 10 N -0.586 5.586 11 C 0.219 3.781 12 C -0.525 4.525 13 H 0.075 0.925 14 C 0.075 3.925 15 N -0.894 5.894 16 Si 0.870 3.130 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.263 1.263 20 C 0.156 3.844 21 C 0.103 3.897 22 C -0.117 4.117 23 C -0.068 4.068 24 C -0.167 4.167 25 C 0.099 3.901 26 N -0.482 5.482 27 S 0.432 5.568 28 H 0.097 0.903 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.184 0.816 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.265 0.735 35 H 0.075 0.925 36 H 0.116 0.884 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.133 0.867 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.845 15.227 -3.718 17.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.316 3.684 3 O -0.332 6.332 4 C -0.427 4.427 5 N -0.163 5.163 6 C -0.070 4.070 7 C -0.424 4.424 8 C 0.377 3.623 9 O -0.384 6.384 10 N -0.317 5.317 11 C 0.099 3.901 12 C -0.563 4.563 13 H 0.093 0.907 14 C -0.127 4.127 15 N -0.532 5.532 16 Si 0.697 3.303 17 H -0.201 1.201 18 H -0.209 1.209 19 H -0.188 1.188 20 C 0.029 3.971 21 C -0.035 4.035 22 C -0.138 4.138 23 C -0.094 4.094 24 C -0.187 4.187 25 C -0.058 4.058 26 N -0.192 5.192 27 S 0.695 5.305 28 H 0.115 0.885 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.201 0.799 32 H 0.062 0.938 33 H 0.050 0.950 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.134 0.866 37 H 0.159 0.841 38 H 0.153 0.847 39 H 0.150 0.850 40 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.042 15.811 -3.993 18.183 hybrid contribution 0.955 -1.582 0.225 1.862 sum -7.087 14.229 -3.768 16.337 Atomic orbital electron populations 1.22042 0.92201 1.04223 1.05369 1.21617 0.91889 0.84872 0.69994 1.90573 1.72358 1.32927 1.37389 1.28291 1.02771 0.97672 1.13965 1.66197 1.39305 0.97023 1.13771 1.22205 0.86776 0.98919 0.99083 1.27073 0.99882 0.98142 1.17350 1.16830 0.81240 0.86920 0.77349 1.90813 1.83605 1.15452 1.48564 1.47843 1.07063 1.05122 1.71708 1.19824 0.83229 0.88120 0.98919 1.21214 1.17317 1.26349 0.91420 0.90732 1.24821 0.96644 0.95595 0.95681 1.69883 1.28891 1.33069 1.21319 0.86938 0.80238 0.79226 0.83887 1.20065 1.20896 1.18795 1.20651 1.02612 0.82513 0.91311 1.21501 0.89422 0.95523 0.97088 1.21871 0.98904 0.97167 0.95817 1.21603 0.98869 0.94668 0.94290 1.22057 0.93620 1.01921 1.01101 1.22578 0.97912 0.95230 0.90039 1.67043 1.29897 1.12239 1.10069 1.84787 0.97687 0.98007 1.50052 0.88498 0.89970 0.88525 0.79870 0.93827 0.95027 0.92520 0.90889 0.86550 0.84062 0.84700 0.84951 0.83102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.65 10.03 36.01 0.36 -1.29 16 2 C 0.44 5.67 7.25 -30.78 -0.22 5.44 16 3 O -0.46 -6.75 17.58 5.56 0.10 -6.65 16 4 C -0.16 -2.34 7.16 -14.59 -0.10 -2.45 16 5 N -0.44 -6.74 10.24 -12.21 -0.13 -6.87 16 6 C 0.10 1.57 11.18 -18.57 -0.21 1.36 16 7 C -0.30 -5.15 6.27 -36.25 -0.23 -5.38 16 8 C 0.59 12.36 7.56 -12.60 -0.10 12.26 16 9 O -0.51 -12.57 16.60 5.26 0.09 -12.49 16 10 N -0.59 -11.51 2.47 -177.77 -0.44 -11.95 16 11 C 0.22 4.91 4.19 -5.19 -0.02 4.89 16 12 C -0.52 -14.05 9.90 -34.44 -0.34 -14.40 16 13 H 0.07 2.27 8.06 -52.49 -0.42 1.85 16 14 C 0.08 2.07 5.47 -17.82 -0.10 1.97 16 15 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 16 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 17 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 19 H -0.26 -5.93 6.54 56.52 0.37 -5.56 16 20 C 0.16 2.36 5.41 -5.20 -0.03 2.33 16 21 C 0.10 1.62 6.18 -82.59 -0.51 1.11 16 22 C -0.12 -1.76 9.72 -39.44 -0.38 -2.15 16 23 C -0.07 -0.91 10.18 -39.28 -0.40 -1.31 16 24 C -0.17 -2.08 10.11 -39.44 -0.40 -2.48 16 25 C 0.10 1.35 11.18 -17.55 -0.20 1.15 16 26 N -0.48 -7.49 6.21 -9.47 -0.06 -7.55 16 27 S 0.43 6.26 14.14 -107.50 -1.52 4.74 16 28 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.64 8.12 -51.93 -0.42 0.21 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.18 2.81 8.06 -52.49 -0.42 2.39 16 32 H 0.04 1.06 6.71 -51.93 -0.35 0.71 16 33 H 0.03 0.63 7.22 -51.93 -0.37 0.26 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 35 H 0.07 0.99 3.93 -19.95 -0.08 0.92 16 36 H 0.12 1.41 7.69 -51.93 -0.40 1.01 16 37 H 0.14 2.02 8.06 -52.49 -0.42 1.60 16 38 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.15 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 357.79 15.07 5.39 5.39 Total: -1.00 -34.46 357.79 -7.51 -41.97 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.17 Total: 2.38 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.87 Total: 1.06 kcal Atomic # 7 Polarization: -52.08 SS G_CDS: 0.15 Total: -51.93 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.19 Total: -19.14 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Atomic # 16 Polarization: 6.26 SS G_CDS: -1.52 Total: 4.74 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.46 -7.51 -41.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443569546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.597 kcal (2) G-P(sol) polarization free energy of solvation -34.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds