Wall clock time and date at job start Wed Apr 1 2020 02:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.21274 * 120.00571 * 2 1 4 4 C 1.46962 * 119.99577 * 180.02562 * 2 1 3 5 5 N 1.30479 * 124.74500 * 359.97226 * 4 2 1 6 6 C 1.30190 * 117.39722 * 180.02562 * 5 4 2 7 7 C 1.37339 * 114.01059 * 0.02562 * 6 5 4 8 8 C 1.47249 * 126.15225 * 179.97438 * 7 6 5 9 9 O 1.21617 * 119.99894 * 354.50849 * 8 7 6 10 10 N 1.34777 * 120.00116 * 174.50745 * 8 7 6 11 11 C 1.46506 * 119.99692 * 184.70227 * 10 8 7 12 12 C 1.50700 * 109.46753 * 275.00908 * 11 10 8 13 13 H 1.08001 * 120.00196 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00007 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00587 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99735 * 359.97438 * 14 12 11 17 17 H 1.48494 * 109.47540 * 89.99866 * 16 14 12 18 18 H 1.48504 * 109.46802 * 210.00154 * 16 14 12 19 19 H 1.48501 * 109.47134 * 329.99939 * 16 14 12 20 20 C 1.46496 * 120.00100 * 4.69952 * 10 8 7 21 21 C 1.50699 * 109.46929 * 84.49704 * 20 10 8 22 22 C 1.38231 * 119.61496 * 94.98065 * 21 20 10 23 23 C 1.38631 * 119.15766 * 179.78739 * 22 21 20 24 24 C 1.38672 * 118.42025 * 0.47594 * 23 22 21 25 25 C 1.38174 * 119.16440 * 359.49878 * 24 23 22 26 26 N 1.31846 * 119.61960 * 275.00002 * 21 20 10 27 27 S 1.70926 * 124.73966 * 180.28778 * 4 2 1 28 28 H 1.08994 * 109.47111 * 239.99883 * 1 2 3 29 29 H 1.09000 * 109.46409 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47401 * 119.99531 * 1 2 3 31 31 H 1.07996 * 122.98789 * 180.02562 * 6 5 4 32 32 H 1.09004 * 109.47093 * 35.00736 * 11 10 8 33 33 H 1.08997 * 109.46830 * 155.01205 * 11 10 8 34 34 H 0.96995 * 120.00217 * 179.97438 * 15 14 12 35 35 H 1.09003 * 109.46941 * 324.50176 * 20 10 8 36 36 H 1.09000 * 109.47407 * 204.49820 * 20 10 8 37 37 H 1.07995 * 120.42051 * 359.97438 * 22 21 20 38 38 H 1.07999 * 120.78854 * 180.23082 * 23 22 21 39 39 H 1.07998 * 120.41770 * 179.78276 * 24 23 22 40 40 H 1.08003 * 119.62106 * 180.24869 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0502 0.0000 4 6 2.2417 -1.2728 -0.0006 5 7 1.6850 -2.4528 -0.0006 6 6 2.4747 -3.4878 -0.0006 7 6 3.8111 -3.1711 -0.0001 8 6 4.9305 -4.1277 0.0006 9 8 4.7116 -5.3198 0.1015 10 7 6.1977 -3.6823 -0.1106 11 6 7.3035 -4.6377 -0.2137 12 6 7.7280 -5.0656 1.1675 13 1 7.2241 -4.6662 2.0353 14 6 8.7596 -5.9670 1.3234 15 7 9.1304 -6.3401 2.5287 16 14 9.6306 -6.6583 -0.1776 17 1 10.7782 -5.7845 -0.5303 18 1 10.1240 -8.0264 0.1229 19 1 8.6818 -6.7138 -1.3187 20 6 6.4692 -2.2428 -0.1285 21 6 6.5548 -1.7302 1.2860 22 6 7.7884 -1.6235 1.9005 23 6 7.8565 -1.1466 3.2004 24 6 6.6752 -0.8028 3.8400 25 6 5.4788 -0.9361 3.1618 26 7 5.4521 -1.3891 1.9234 27 16 3.9451 -1.4142 0.0064 28 1 -0.3633 -0.5138 0.8899 29 1 -0.3632 1.0277 0.0005 30 1 -0.3634 -0.5137 -0.8900 31 1 2.1112 -4.5048 -0.0010 32 1 6.9783 -5.5101 -0.7805 33 1 8.1444 -4.1665 -0.7226 34 1 9.8559 -6.9745 2.6383 35 1 5.6646 -1.7278 -0.6535 36 1 7.4137 -2.0575 -0.6399 37 1 8.6880 -1.9051 1.3734 38 1 8.8068 -1.0489 3.7043 39 1 6.6905 -0.4312 4.8540 40 1 4.5546 -0.6667 3.6515 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001443569546.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:49:50 Heat of formation + Delta-G solvation = 17.665997 kcal Electronic energy + Delta-G solvation = -27886.070531 eV Core-core repulsion = 23986.387967 eV Total energy + Delta-G solvation = -3899.682564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.093 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.56245 -41.06370 -40.43657 -39.56873 -37.07133 -34.88762 -33.53833 -32.77211 -32.45026 -31.00266 -29.74071 -28.03888 -27.22837 -24.99976 -24.41647 -23.35305 -22.94610 -21.71242 -19.54311 -19.51332 -19.14509 -18.02281 -17.91176 -17.62780 -17.03679 -16.83184 -16.52554 -16.43114 -16.07687 -15.90627 -15.58172 -15.43203 -14.95040 -14.75523 -14.66593 -14.40193 -14.25961 -14.03999 -13.75960 -13.54632 -13.14703 -13.12390 -13.04786 -12.71465 -12.42138 -12.37208 -12.10378 -11.74207 -11.58758 -11.23842 -11.05085 -10.80873 -10.77320 -10.43220 -10.30989 -9.99280 -9.63539 -9.30867 -8.28228 -6.32689 -1.14161 0.06924 0.15381 0.39551 0.67229 0.73594 1.35204 1.41115 1.50003 1.71772 1.97850 2.21567 2.34639 2.75220 2.85566 3.05604 3.21782 3.36688 3.60180 3.69573 3.93421 4.07463 4.11121 4.20996 4.23923 4.31381 4.33707 4.61513 4.63346 4.67627 4.69050 4.82940 4.91100 5.02933 5.17454 5.20499 5.29151 5.38561 5.46219 5.75469 6.13167 6.25371 6.30362 6.65307 6.68121 6.85041 7.05522 7.30539 8.88393 Molecular weight = 345.09amu Principal moments of inertia in cm(-1) A = 0.013978 B = 0.004287 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.618602 B = 6529.937588 C = 7824.111169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.442 3.558 3 O -0.478 6.478 4 C -0.164 4.164 5 N -0.444 5.444 6 C 0.099 3.901 7 C -0.329 4.329 8 C 0.586 3.414 9 O -0.564 6.564 10 N -0.587 5.587 11 C 0.224 3.776 12 C -0.518 4.518 13 H 0.024 0.976 14 C 0.016 3.984 15 N -0.944 5.944 16 Si 0.940 3.060 17 H -0.247 1.247 18 H -0.291 1.291 19 H -0.252 1.252 20 C 0.150 3.850 21 C 0.082 3.918 22 C -0.134 4.134 23 C -0.078 4.078 24 C -0.160 4.160 25 C 0.085 3.915 26 N -0.500 5.500 27 S 0.479 5.521 28 H 0.106 0.894 29 H 0.100 0.900 30 H 0.109 0.891 31 H 0.185 0.815 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.266 0.734 35 H 0.090 0.910 36 H 0.148 0.852 37 H 0.143 0.857 38 H 0.156 0.844 39 H 0.166 0.834 40 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.064 17.474 -4.747 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.319 3.681 3 O -0.353 6.353 4 C -0.429 4.429 5 N -0.163 5.163 6 C -0.068 4.068 7 C -0.457 4.457 8 C 0.374 3.626 9 O -0.445 6.445 10 N -0.317 5.317 11 C 0.103 3.897 12 C -0.557 4.557 13 H 0.042 0.958 14 C -0.182 4.182 15 N -0.585 5.585 16 Si 0.763 3.237 17 H -0.171 1.171 18 H -0.217 1.217 19 H -0.176 1.176 20 C 0.024 3.976 21 C -0.056 4.056 22 C -0.155 4.155 23 C -0.104 4.104 24 C -0.179 4.179 25 C -0.072 4.072 26 N -0.211 5.211 27 S 0.743 5.257 28 H 0.125 0.875 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.202 0.798 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.166 0.834 37 H 0.161 0.839 38 H 0.173 0.827 39 H 0.184 0.816 40 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.253 18.135 -5.039 20.552 hybrid contribution 0.939 -2.145 0.703 2.445 sum -7.314 15.990 -4.336 18.110 Atomic orbital electron populations 1.22087 0.88963 1.05828 1.06319 1.22103 0.93409 0.83614 0.69021 1.90576 1.73074 1.33222 1.38396 1.28853 1.03244 0.98374 1.12430 1.66255 1.38793 0.96905 1.14384 1.22321 0.86659 0.99490 0.98376 1.26723 0.99022 0.99552 1.20374 1.17311 0.82289 0.86858 0.76180 1.90761 1.84606 1.17823 1.51278 1.47817 1.06096 1.06824 1.71009 1.19606 0.85003 0.88831 0.96217 1.21297 1.16505 1.25942 0.91946 0.95773 1.25734 0.97636 0.95910 0.98896 1.70048 1.30041 1.34338 1.24042 0.85829 0.79730 0.78265 0.79851 1.17120 1.21668 1.17610 1.21006 1.04862 0.79749 0.91954 1.21559 0.89864 0.96700 0.97440 1.22052 0.98842 0.97747 0.96833 1.21972 1.00365 0.94166 0.93917 1.22437 0.92726 1.00442 1.02334 1.23089 0.99504 0.94887 0.89711 1.66943 1.30010 1.12937 1.11195 1.84530 0.97543 0.95119 1.48493 0.87541 0.88145 0.87245 0.79782 0.95621 0.91351 0.92519 0.89349 0.83412 0.83921 0.82654 0.81630 0.80852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.03 71.24 0.71 -1.94 16 2 C 0.44 10.33 7.25 27.97 0.20 10.54 16 3 O -0.48 -13.01 17.58 -3.01 -0.05 -13.06 16 4 C -0.16 -4.47 7.16 87.18 0.62 -3.85 16 5 N -0.44 -13.00 10.24 -192.55 -1.97 -14.97 16 6 C 0.10 3.24 11.18 84.72 0.95 4.19 16 7 C -0.33 -11.54 6.27 24.43 0.15 -11.38 16 8 C 0.59 25.27 7.56 86.61 0.66 25.92 16 9 O -0.56 -29.36 16.60 -4.08 -0.07 -29.43 16 10 N -0.59 -23.28 2.47 -834.59 -2.06 -25.34 16 11 C 0.22 10.07 4.19 85.63 0.36 10.43 16 12 C -0.52 -28.54 9.90 25.60 0.25 -28.28 16 13 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 14 C 0.02 0.91 5.47 84.65 0.46 1.37 16 15 N -0.94 -57.34 13.96 21.45 0.30 -57.05 16 16 Si 0.94 41.51 27.47 68.60 1.88 43.40 16 17 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 18 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.25 -10.61 6.54 99.48 0.65 -9.96 16 20 C 0.15 4.39 5.41 85.63 0.46 4.86 16 21 C 0.08 2.54 6.18 42.55 0.26 2.80 16 22 C -0.13 -3.99 9.72 22.36 0.22 -3.78 16 23 C -0.08 -2.02 10.18 22.47 0.23 -1.79 16 24 C -0.16 -3.70 10.11 22.36 0.23 -3.47 16 25 C 0.08 2.19 11.18 84.67 0.95 3.14 16 26 N -0.50 -15.22 6.21 -183.89 -1.14 -16.36 16 27 S 0.48 13.36 14.14 -56.49 -0.80 12.56 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.21 8.12 -2.39 -0.02 1.19 16 30 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.19 5.85 8.06 -2.91 -0.02 5.82 16 32 H 0.03 1.26 6.71 -2.39 -0.02 1.24 16 33 H 0.07 2.58 7.22 -2.39 -0.02 2.56 16 34 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.09 2.29 3.93 -22.72 -0.09 2.21 16 36 H 0.15 3.28 7.69 -2.39 -0.02 3.27 16 37 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 38 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 39 H 0.17 2.64 8.06 -2.91 -0.02 2.62 16 40 H 0.17 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -78.32 357.79 3.76 -74.55 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.95 Total: 16.96 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 6.72 Total: 8.75 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -4.87 Total: -113.72 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.12 Total: -42.49 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.88 Total: 43.40 kcal Atomic # 16 Polarization: 13.36 SS G_CDS: -0.80 Total: 12.56 kcal Total: -78.32 3.76 -74.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001443569546.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.219 kcal (2) G-P(sol) polarization free energy of solvation -78.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds